Wall clock time and date at job start Sat Apr 11 2020 06:02:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42887 * 1 3 3 C 1.35734 * 116.99990 * 2 1 4 4 C 1.41858 * 126.78773 * 180.02562 * 3 2 1 5 5 C 1.36656 * 103.81232 * 180.02562 * 4 3 2 6 6 C 1.47542 * 126.87838 * 179.97438 * 5 4 3 7 7 O 1.21571 * 120.00154 * 359.97438 * 6 5 4 8 8 N 1.34782 * 119.99879 * 179.97438 * 6 5 4 9 9 C 1.46499 * 120.00273 * 179.97438 * 8 6 5 10 10 C 1.52992 * 109.47658 * 180.02562 * 9 8 6 11 11 H 1.09002 * 109.47103 * 64.99700 * 10 9 8 12 12 C 1.52997 * 109.47482 * 184.99947 * 10 9 8 13 13 N 1.46902 * 109.47181 * 305.00169 * 10 9 8 14 14 C 1.46900 * 110.99736 * 298.95354 * 13 10 9 15 15 C 1.46895 * 111.00186 * 174.99766 * 13 10 9 16 16 C 1.50703 * 109.46874 * 189.99595 * 15 13 10 17 17 O 1.21295 * 120.00359 * 0.02562 * 16 15 13 18 18 N 1.34778 * 119.99693 * 179.97438 * 16 15 13 19 19 C 1.37102 * 120.00091 * 180.02562 * 18 16 15 20 20 H 1.08001 * 119.99374 * 359.97438 * 19 18 16 21 21 C 1.38943 * 120.00514 * 180.02562 * 19 18 16 22 22 N 1.31420 * 119.99495 * 359.97438 * 21 19 18 23 23 Si 1.86794 * 120.00457 * 179.97438 * 21 19 18 24 24 H 1.48493 * 109.47266 * 89.99805 * 23 21 19 25 25 H 1.48498 * 109.47322 * 209.99960 * 23 21 19 26 26 H 1.48498 * 109.46858 * 329.99735 * 23 21 19 27 27 O 1.34664 * 106.24224 * 0.21944 * 5 4 3 28 28 N 1.20874 * 111.62966 * 359.59845 * 27 5 4 29 29 H 1.08998 * 109.47167 * 180.02562 * 1 2 3 30 30 H 1.09003 * 109.47464 * 299.99481 * 1 2 3 31 31 H 1.09004 * 109.47781 * 59.99803 * 1 2 3 32 32 H 1.08001 * 128.09302 * 0.02562 * 4 3 2 33 33 H 0.97002 * 119.99790 * 359.97438 * 8 6 5 34 34 H 1.09001 * 109.46952 * 59.99319 * 9 8 6 35 35 H 1.09004 * 109.46722 * 300.00399 * 9 8 6 36 36 H 1.09002 * 109.47153 * 59.99783 * 12 10 9 37 37 H 1.09001 * 109.46832 * 299.99974 * 12 10 9 38 38 H 1.09004 * 109.47261 * 179.97438 * 12 10 9 39 39 H 1.08997 * 109.47292 * 59.99623 * 14 13 10 40 40 H 1.09002 * 109.47267 * 179.97438 * 14 13 10 41 41 H 1.09000 * 109.47210 * 300.00139 * 14 13 10 42 42 H 1.08999 * 109.47066 * 309.99575 * 15 13 10 43 43 H 1.09001 * 109.47511 * 70.00176 * 15 13 10 44 44 H 0.97002 * 120.00164 * 0.02562 * 18 16 15 45 45 H 0.97001 * 119.99441 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0451 1.2094 0.0000 4 6 3.4430 1.4506 -0.0005 5 6 3.5389 2.8138 0.0003 6 6 4.7784 3.6142 0.0008 7 8 5.8602 3.0595 0.0009 8 7 4.7112 4.9603 0.0011 9 6 5.9419 5.7552 0.0021 10 6 5.5878 7.2435 0.0029 11 1 5.0807 7.4959 0.9342 12 6 6.8677 8.0724 -0.1217 13 7 4.7021 7.5368 -1.1318 14 6 5.3627 7.2316 -2.4078 15 6 4.2452 8.9324 -1.0961 16 6 3.1572 9.1311 -2.1197 17 8 2.7974 8.2015 -2.8107 18 7 2.5832 10.3417 -2.2667 19 6 1.5930 10.5224 -3.1975 20 1 1.2733 9.6948 -3.8133 21 6 1.0016 11.7705 -3.3495 22 7 1.3911 12.7777 -2.6005 23 14 -0.3470 12.0169 -4.6183 24 1 -1.6674 11.7424 -3.9969 25 1 -0.3133 13.4174 -5.1109 26 1 -0.1323 11.0868 -5.7558 27 8 2.2757 3.2802 0.0062 28 7 1.4685 2.3805 0.0009 29 1 -0.3633 -1.0276 0.0005 30 1 -0.3634 0.5138 0.8900 31 1 -0.3635 0.5139 -0.8900 32 1 4.2441 0.7262 -0.0014 33 1 3.8480 5.4028 0.0006 34 1 6.5265 5.5208 -0.8875 35 1 6.5253 5.5203 0.8924 36 1 7.3748 7.8201 -1.0531 37 1 7.5249 7.8548 0.7202 38 1 6.6154 9.1328 -0.1216 39 1 5.6284 6.1749 -2.4358 40 1 4.6849 7.4574 -3.2311 41 1 6.2650 7.8357 -2.5035 42 1 3.8570 9.1623 -0.1038 43 1 5.0813 9.5944 -1.3215 44 1 2.8707 11.0851 -1.7138 45 1 0.9779 13.6489 -2.7063 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001505904347.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:02:10 Heat of formation + Delta-G solvation = -50.654479 kcal Electronic energy + Delta-G solvation = -29458.411179 eV Core-core repulsion = 25093.878939 eV Total energy + Delta-G solvation = -4364.532240 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 340.163 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -46.12935 -41.01992 -40.32045 -39.95473 -38.74695 -35.98754 -35.44787 -34.33611 -33.25340 -33.12427 -31.88317 -29.33029 -28.67031 -27.71021 -26.97722 -25.50031 -24.57342 -24.29254 -21.86010 -21.39774 -20.70170 -19.89091 -19.74608 -19.11013 -18.00508 -17.95728 -17.37498 -17.13628 -16.98584 -16.59715 -16.54332 -16.24943 -15.93417 -15.91678 -15.67249 -15.26428 -14.95536 -14.76417 -14.58498 -14.16006 -13.86416 -13.63216 -13.42054 -13.19439 -13.06507 -12.93693 -12.87251 -12.78357 -12.55804 -12.40574 -12.33869 -12.22571 -12.11249 -11.72900 -11.53606 -11.40510 -11.04578 -10.49717 -10.22039 -10.15517 -9.94677 -9.13282 -8.43226 -5.90662 -0.39010 0.93756 1.39092 1.42761 1.46239 1.54669 1.55640 1.84767 2.12797 2.28036 2.31972 2.80377 2.96923 3.24720 3.49291 3.62627 3.74108 3.80998 3.99687 4.11972 4.22078 4.26902 4.30818 4.35258 4.40709 4.55873 4.58826 4.62395 4.62853 4.67667 4.71763 4.79684 4.91183 5.07506 5.20454 5.29152 5.39621 5.44907 5.79666 5.91858 6.10766 6.23877 6.28157 6.66021 6.84289 6.94584 7.18416 7.63416 8.19843 8.74226 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.009939 B = 0.002672 C = 0.002170 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2816.466633 B =10478.147562 C =12897.311490 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.023 3.977 2 O -0.288 6.288 3 C 0.198 3.802 4 C -0.152 4.152 5 C -0.060 4.060 6 C 0.608 3.392 7 O -0.542 6.542 8 N -0.689 5.689 9 C 0.129 3.871 10 C 0.068 3.932 11 H 0.108 0.892 12 C -0.182 4.182 13 N -0.526 5.526 14 C 0.024 3.976 15 C 0.059 3.941 16 C 0.442 3.558 17 O -0.613 6.613 18 N -0.577 5.577 19 C -0.327 4.327 20 H 0.077 0.923 21 C -0.014 4.014 22 N -0.922 5.922 23 Si 0.988 3.012 24 H -0.272 1.272 25 H -0.272 1.272 26 H -0.274 1.274 27 O 0.115 5.885 28 N -0.404 5.404 29 H 0.139 0.861 30 H 0.061 0.939 31 H 0.056 0.944 32 H 0.209 0.791 33 H 0.419 0.581 34 H 0.070 0.930 35 H 0.097 0.903 36 H 0.059 0.941 37 H 0.086 0.914 38 H 0.064 0.936 39 H 0.070 0.930 40 H 0.051 0.949 41 H 0.038 0.962 42 H 0.113 0.887 43 H 0.070 0.930 44 H 0.396 0.604 45 H 0.276 0.724 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.687 -16.854 10.335 21.212 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.194 6.194 3 C 0.001 3.999 4 C -0.174 4.174 5 C -0.126 4.126 6 C 0.391 3.609 7 O -0.420 6.420 8 N -0.339 5.339 9 C 0.006 3.994 10 C -0.040 4.040 11 H 0.126 0.874 12 C -0.241 4.241 13 N -0.250 5.250 14 C -0.124 4.124 15 C -0.072 4.072 16 C 0.230 3.770 17 O -0.498 6.498 18 N -0.215 5.215 19 C -0.457 4.457 20 H 0.095 0.905 21 C -0.213 4.213 22 N -0.563 5.563 23 Si 0.812 3.188 24 H -0.198 1.198 25 H -0.197 1.197 26 H -0.199 1.199 27 O 0.049 5.951 28 N -0.129 5.129 29 H 0.157 0.843 30 H 0.079 0.921 31 H 0.075 0.925 32 H 0.226 0.774 33 H 0.257 0.743 34 H 0.088 0.912 35 H 0.115 0.885 36 H 0.078 0.922 37 H 0.105 0.895 38 H 0.083 0.917 39 H 0.088 0.912 40 H 0.070 0.930 41 H 0.056 0.944 42 H 0.131 0.869 43 H 0.088 0.912 44 H 0.229 0.771 45 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges 6.589 -17.839 9.918 21.448 hybrid contribution -0.107 1.058 -0.670 1.256 sum 6.482 -16.781 9.248 20.228 Atomic orbital electron populations 1.23380 0.74936 1.06353 1.02395 1.86215 1.24397 1.19629 1.89190 1.22123 0.91088 0.86068 1.00595 1.22428 0.94577 0.94933 1.05472 1.24091 0.86958 0.94148 1.07394 1.16410 0.84691 0.82346 0.77482 1.90853 1.27145 1.71865 1.52170 1.45821 1.12359 1.04485 1.71230 1.21661 0.85508 0.88762 1.03454 1.22138 0.93355 0.93666 0.94882 0.87434 1.22366 0.97702 1.00439 1.03605 1.61746 1.39347 1.20659 1.03217 1.22418 0.97107 1.00925 0.91935 1.21729 0.95885 0.90454 0.99132 1.20874 0.86322 0.82595 0.87243 1.90483 1.66960 1.42057 1.50349 1.41942 1.34196 1.10321 1.35074 1.19607 1.14252 0.96471 1.15372 0.90484 1.25957 1.00768 0.94536 1.00034 1.69670 1.43879 1.02042 1.40706 0.84995 0.78091 0.77620 0.78063 1.19805 1.19693 1.19913 1.84996 1.12003 1.29634 1.68494 1.74023 1.16374 0.97213 1.25262 0.84255 0.92063 0.92493 0.77437 0.74322 0.91211 0.88509 0.92176 0.89492 0.91721 0.91171 0.92971 0.94406 0.86912 0.91203 0.77077 0.91459 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.34 10.73 113.37 1.22 1.55 16 2 O -0.29 -5.92 10.57 -90.58 -0.96 -6.88 16 3 C 0.20 4.70 8.00 85.78 0.69 5.38 16 4 C -0.15 -3.27 10.97 22.80 0.25 -3.02 16 5 C -0.06 -1.41 7.29 24.36 0.18 -1.23 16 6 C 0.61 14.48 7.82 86.70 0.68 15.16 16 7 O -0.54 -15.00 16.91 -3.94 -0.07 -15.07 16 8 N -0.69 -14.65 5.39 -466.28 -2.51 -17.16 16 9 C 0.13 2.32 4.68 86.38 0.40 2.72 16 10 C 0.07 1.21 2.50 44.91 0.11 1.33 16 11 H 0.11 1.65 8.03 -2.39 -0.02 1.63 16 12 C -0.18 -2.69 8.50 71.98 0.61 -2.08 16 13 N -0.53 -14.15 3.93 -901.64 -3.54 -17.69 16 14 C 0.02 0.70 8.46 127.69 1.08 1.78 16 15 C 0.06 1.80 4.89 85.56 0.42 2.21 16 16 C 0.44 19.85 7.47 87.66 0.66 20.50 16 17 O -0.61 -32.25 13.91 -3.08 -0.04 -32.29 16 18 N -0.58 -28.63 5.29 -306.98 -1.62 -30.25 16 19 C -0.33 -18.27 9.68 84.04 0.81 -17.46 16 20 H 0.08 4.61 7.16 -2.91 -0.02 4.59 16 21 C -0.01 -0.71 5.50 84.92 0.47 -0.25 16 22 N -0.92 -49.19 13.05 21.66 0.28 -48.91 16 23 Si 0.99 42.83 29.55 68.60 2.03 44.85 16 24 H -0.27 -11.51 7.11 99.48 0.71 -10.81 16 25 H -0.27 -11.19 7.11 99.48 0.71 -10.48 16 26 H -0.27 -11.97 7.11 99.48 0.71 -11.26 16 27 O 0.11 3.00 11.03 65.62 0.72 3.72 16 28 N -0.40 -10.77 11.50 -172.01 -1.98 -12.75 16 29 H 0.14 1.03 8.14 -2.39 -0.02 1.02 16 30 H 0.06 0.88 8.14 -2.39 -0.02 0.86 16 31 H 0.06 0.88 8.14 -2.38 -0.02 0.86 16 32 H 0.21 3.50 8.06 -2.91 -0.02 3.48 16 33 H 0.42 9.34 7.96 -92.71 -0.74 8.60 16 34 H 0.07 1.37 6.70 -2.39 -0.02 1.35 16 35 H 0.10 1.43 8.14 -2.39 -0.02 1.41 16 36 H 0.06 0.96 6.39 -2.39 -0.02 0.94 16 37 H 0.09 0.92 8.14 -2.39 -0.02 0.90 16 38 H 0.06 1.01 6.75 -2.38 -0.02 1.00 16 39 H 0.07 1.87 6.44 -2.39 -0.02 1.85 16 40 H 0.05 2.00 5.83 -2.39 -0.01 1.99 16 41 H 0.04 0.95 6.28 -2.39 -0.01 0.94 16 42 H 0.11 2.93 8.00 -2.39 -0.02 2.91 16 43 H 0.07 1.90 6.94 -2.39 -0.02 1.89 16 44 H 0.40 18.60 7.90 -92.71 -0.73 17.87 16 45 H 0.28 13.85 8.31 -92.71 -0.77 13.08 16 Total: -1.00 -70.70 380.38 -0.53 -71.22 By element: Atomic # 1 Polarization: 35.01 SS G_CDS: -0.41 Total: 34.60 kcal Atomic # 6 Polarization: 19.02 SS G_CDS: 7.57 Total: 26.59 kcal Atomic # 7 Polarization: -117.38 SS G_CDS: -9.37 Total: -126.75 kcal Atomic # 8 Polarization: -50.18 SS G_CDS: -0.34 Total: -50.52 kcal Atomic # 14 Polarization: 42.83 SS G_CDS: 2.03 Total: 44.85 kcal Total: -70.70 -0.53 -71.22 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001505904347.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.567 kcal (2) G-P(sol) polarization free energy of solvation -70.695 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.129 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.526 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.221 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.654 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds