Wall clock time and date at job start Sat Apr 11 2020 05:59:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.08998 * 109.47272 * 2 1 4 4 N 1.46502 * 109.46644 * 119.99756 * 2 1 3 5 5 C 1.36931 * 120.00165 * 275.00059 * 4 2 1 6 6 H 1.08000 * 120.00073 * 359.97438 * 5 4 2 7 7 C 1.38812 * 120.00157 * 180.02562 * 5 4 2 8 8 N 1.31623 * 120.00057 * 359.97438 * 7 5 4 9 9 Si 1.86795 * 120.00108 * 179.97438 * 7 5 4 10 10 H 1.48500 * 109.47422 * 90.00102 * 9 7 5 11 11 H 1.48502 * 109.47061 * 209.99601 * 9 7 5 12 12 H 1.48497 * 109.47426 * 329.99389 * 9 7 5 13 13 C 1.53000 * 109.47004 * 239.99760 * 2 1 3 14 14 H 1.09000 * 109.70248 * 56.85023 * 13 2 1 15 15 C 1.53191 * 109.58520 * 296.49303 * 13 2 1 16 16 C 1.53041 * 109.31239 * 185.57790 * 15 13 2 17 17 C 1.53048 * 109.53448 * 61.36455 * 16 15 13 18 18 C 1.53619 * 109.24510 * 298.51162 * 17 16 15 19 19 N 1.46923 * 109.58356 * 177.20821 * 13 2 1 20 20 C 1.34781 * 120.63253 * 353.36942 * 19 13 2 21 21 O 1.21619 * 119.99610 * 356.06584 * 20 19 13 22 22 C 1.47301 * 120.00078 * 176.34156 * 20 19 13 23 23 C 1.41333 * 126.43506 * 28.79085 * 22 20 19 24 24 N 1.30416 * 108.04846 * 179.81689 * 23 22 20 25 25 N 1.39924 * 108.95851 * 0.44806 * 24 23 22 26 26 C 1.46499 * 125.74883 * 179.74945 * 25 24 23 27 27 C 1.34350 * 108.49719 * 359.71247 * 25 24 23 28 28 Cl 1.73610 * 126.31445 * 180.02562 * 27 25 24 29 29 H 1.09001 * 109.46988 * 307.01148 * 1 2 3 30 30 H 1.09002 * 109.46687 * 67.00747 * 1 2 3 31 31 H 1.08994 * 109.47560 * 187.00375 * 1 2 3 32 32 H 0.97003 * 119.99861 * 94.99665 * 4 2 1 33 33 H 0.96997 * 120.00331 * 180.02562 * 8 7 5 34 34 H 1.09004 * 109.50187 * 305.53210 * 15 13 2 35 35 H 1.08996 * 109.49779 * 65.62868 * 15 13 2 36 36 H 1.08993 * 109.46554 * 181.38307 * 16 15 13 37 37 H 1.08998 * 109.46329 * 301.35289 * 16 15 13 38 38 H 1.08998 * 109.49480 * 58.59452 * 17 16 15 39 39 H 1.09001 * 109.49514 * 178.68437 * 17 16 15 40 40 H 1.09004 * 109.74090 * 295.11883 * 18 17 16 41 41 H 1.09001 * 109.66409 * 174.54963 * 18 17 16 42 42 H 1.08007 * 125.97947 * 0.02562 * 23 22 20 43 43 H 1.08997 * 109.46911 * 269.95571 * 26 25 24 44 44 H 1.08997 * 109.47463 * 29.95537 * 26 25 24 45 45 H 1.09000 * 109.46987 * 149.95655 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 7 2.0183 -0.6906 1.1962 5 6 2.1490 -0.0075 2.3758 6 1 1.8926 1.0405 2.4242 7 6 2.6121 -0.6617 3.5091 8 7 2.9251 -1.9388 3.4501 9 14 2.7911 0.2704 5.1180 10 1 1.5237 0.1793 5.8865 11 1 3.8959 -0.3229 5.9134 12 1 3.0961 1.6955 4.8332 13 6 2.0400 -0.7213 -1.2492 14 1 1.6335 -0.2440 -2.1408 15 6 1.6042 -2.1893 -1.2084 16 6 2.2327 -2.9368 -2.3867 17 6 3.7579 -2.8824 -2.2724 18 6 4.2179 -1.4178 -2.3286 19 7 3.5077 -0.6646 -1.2859 20 6 4.1894 0.0688 -0.3838 21 8 3.5885 0.7484 0.4262 22 6 5.6624 0.0520 -0.3828 23 6 6.5001 -0.1673 -1.4997 24 7 7.7382 -0.1017 -1.0953 25 7 7.7541 0.1487 0.2812 26 6 8.9527 0.2869 1.1122 27 6 6.4850 0.2418 0.7122 28 17 5.9727 0.5452 2.3430 29 1 -0.3633 0.6186 0.8206 30 1 -0.3633 0.4014 -0.9461 31 1 -0.3634 -1.0199 0.1253 32 1 2.2489 -1.6318 1.1527 33 1 3.2484 -2.3961 4.2421 34 1 1.9345 -2.6412 -0.2730 35 1 0.5180 -2.2484 -1.2778 36 1 1.9045 -3.9761 -2.3742 37 1 1.9218 -2.4692 -3.3209 38 1 4.0680 -3.3277 -1.3271 39 1 4.2046 -3.4348 -3.0991 40 1 3.9853 -0.9961 -3.3065 41 1 5.2920 -1.3636 -2.1511 42 1 6.1723 -0.3532 -2.5120 43 1 9.2384 -0.6897 1.5030 44 1 9.7673 0.6902 0.5108 45 1 8.7440 0.9631 1.9413 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001566528362.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:59:38 Heat of formation + Delta-G solvation = 110.884107 kcal Electronic energy + Delta-G solvation = -29973.084019 eV Core-core repulsion = 26056.265783 eV Total energy + Delta-G solvation = -3916.818236 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.141 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -41.33331 -39.67175 -36.62524 -36.33492 -35.19841 -33.45201 -32.16896 -32.03007 -29.86165 -29.56139 -27.94840 -27.19723 -24.99519 -23.84236 -23.09972 -22.09853 -21.29774 -20.39285 -19.58329 -18.64955 -17.07409 -16.77581 -16.10825 -15.75314 -15.39627 -14.74350 -14.49415 -14.32645 -14.04625 -13.82344 -13.63938 -13.42251 -13.18604 -12.91978 -12.76095 -12.58589 -12.45865 -12.09251 -11.96526 -11.66070 -11.56646 -11.32610 -11.23143 -11.02140 -10.71240 -10.63126 -10.56267 -10.42090 -10.41287 -10.19208 -10.02043 -9.68833 -9.26393 -9.23776 -8.69620 -8.30486 -8.03169 -7.78475 -6.47981 -5.41237 -2.61040 1.61794 1.72383 2.35156 2.73056 3.52143 3.55054 3.62338 3.63922 4.08356 4.42846 4.86802 4.91294 5.00959 5.03018 5.12668 5.16133 5.28169 5.32360 5.39326 5.46867 5.55420 5.61328 5.77341 5.83087 5.89160 5.93320 6.00873 6.12755 6.19715 6.27604 6.36074 6.41246 6.43331 6.54768 6.61100 6.62984 6.70730 7.01019 7.12799 7.21434 7.49307 7.55164 8.09095 8.18715 8.77256 9.21572 9.89457 10.46888 10.83694 11.83405 Molecular weight = 340.14amu Principal moments of inertia in cm(-1) A = 0.008370 B = 0.007985 C = 0.004618 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3344.624864 B = 3505.781377 C = 6061.593120 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C 0.166 3.834 3 H 0.087 0.913 4 N -0.703 5.703 5 C -0.163 4.163 6 H 0.062 0.938 7 C -0.020 4.020 8 N -0.943 5.943 9 Si 0.872 3.128 10 H -0.296 1.296 11 H -0.298 1.298 12 H -0.285 1.285 13 C 0.151 3.849 14 H 0.060 0.940 15 C -0.132 4.132 16 C -0.116 4.116 17 C -0.134 4.134 18 C 0.086 3.914 19 N -0.606 5.606 20 C 0.577 3.423 21 O -0.449 6.449 22 C -0.254 4.254 23 C 0.065 3.935 24 N -0.288 5.288 25 N -0.363 5.363 26 C 0.094 3.906 27 C 0.176 3.824 28 Cl 0.050 6.950 29 H 0.050 0.950 30 H 0.030 0.970 31 H 0.044 0.956 32 H 0.378 0.622 33 H 0.244 0.756 34 H 0.079 0.921 35 H 0.069 0.931 36 H 0.058 0.942 37 H 0.056 0.944 38 H 0.069 0.931 39 H 0.064 0.936 40 H 0.060 0.940 41 H 0.098 0.902 42 H 0.205 0.795 43 H 0.081 0.919 44 H 0.095 0.905 45 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.167 0.980 -13.531 15.835 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.229 4.229 2 C 0.056 3.944 3 H 0.105 0.895 4 N -0.344 5.344 5 C -0.295 4.295 6 H 0.080 0.920 7 C -0.213 4.213 8 N -0.596 5.596 9 Si 0.706 3.294 10 H -0.224 1.224 11 H -0.225 1.225 12 H -0.211 1.211 13 C 0.047 3.953 14 H 0.078 0.922 15 C -0.171 4.171 16 C -0.154 4.154 17 C -0.173 4.173 18 C -0.037 4.037 19 N -0.343 5.343 20 C 0.363 3.637 21 O -0.319 6.319 22 C -0.270 4.270 23 C -0.120 4.120 24 N -0.109 5.109 25 N -0.146 5.146 26 C -0.047 4.047 27 C 0.019 3.981 28 Cl 0.078 6.922 29 H 0.069 0.931 30 H 0.050 0.950 31 H 0.063 0.937 32 H 0.213 0.787 33 H 0.055 0.945 34 H 0.097 0.903 35 H 0.087 0.913 36 H 0.076 0.924 37 H 0.075 0.925 38 H 0.088 0.912 39 H 0.083 0.917 40 H 0.078 0.922 41 H 0.116 0.884 42 H 0.221 0.779 43 H 0.100 0.900 44 H 0.114 0.886 45 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges 9.171 1.510 -13.005 15.985 hybrid contribution -0.517 -0.075 1.423 1.516 sum 8.654 1.435 -11.582 14.529 Atomic orbital electron populations 1.22593 1.00393 1.00823 0.99108 1.20755 0.90030 0.98265 0.85320 0.89526 1.42389 1.77271 1.09653 1.05130 1.19015 1.31311 0.92955 0.86240 0.91984 1.24352 1.04485 0.95708 0.96710 1.69611 1.54026 1.08338 1.27606 0.86636 0.77305 0.79256 0.86243 1.22427 1.22465 1.21118 1.21538 0.78673 0.95734 0.99369 0.92187 1.21981 1.00162 0.95742 0.99176 1.21499 0.95186 1.00149 0.98536 1.21975 0.96509 0.96470 1.02309 1.22389 0.98583 0.91686 0.91061 1.47582 1.06095 1.49298 1.31282 1.16953 0.84300 0.81492 0.80950 1.90988 1.66806 1.39056 1.35044 1.20166 0.95700 1.19382 0.91705 1.24323 0.89437 0.98320 0.99951 1.77190 1.21135 1.24436 0.88168 1.48411 1.04524 1.54956 1.06742 1.21996 0.84836 1.03781 0.94094 1.22280 0.85405 0.99833 0.90551 1.98536 1.88328 1.93106 1.12221 0.93091 0.95050 0.93667 0.78689 0.94542 0.90278 0.91273 0.92371 0.92518 0.91243 0.91725 0.92151 0.88401 0.77861 0.90043 0.88632 0.89150 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 20. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.12 9.04 37.16 0.34 -2.78 16 2 C 0.17 3.38 1.89 -67.93 -0.13 3.25 16 3 H 0.09 1.96 5.86 -52.29 -0.31 1.65 16 4 N -0.70 -17.24 3.52 -53.42 -0.19 -17.43 16 5 C -0.16 -4.52 8.07 -15.06 -0.12 -4.64 16 6 H 0.06 1.79 7.83 -52.49 -0.41 1.38 16 7 C -0.02 -0.57 5.50 -17.43 -0.10 -0.66 16 8 N -0.94 -28.43 13.06 55.49 0.72 -27.71 16 9 Si 0.87 23.30 29.55 -169.99 -5.02 18.28 16 10 H -0.30 -7.97 7.11 56.52 0.40 -7.56 16 11 H -0.30 -8.02 7.11 56.52 0.40 -7.62 16 12 H -0.29 -7.53 7.11 56.52 0.40 -7.13 16 13 C 0.15 2.49 2.73 -67.60 -0.18 2.31 16 14 H 0.06 0.89 8.14 -51.93 -0.42 0.47 16 15 C -0.13 -2.05 4.83 -26.61 -0.13 -2.18 16 16 C -0.12 -1.43 5.88 -26.69 -0.16 -1.59 16 17 C -0.13 -1.63 6.10 -26.39 -0.16 -1.80 16 18 C 0.09 1.07 5.62 -3.49 -0.02 1.05 16 19 N -0.61 -9.95 2.96 -166.26 -0.49 -10.44 16 20 C 0.58 11.25 7.08 -12.57 -0.09 11.16 16 21 O -0.45 -10.32 9.25 5.26 0.05 -10.27 16 22 C -0.25 -4.48 5.74 -105.02 -0.60 -5.08 16 23 C 0.07 0.92 9.75 -16.98 -0.17 0.75 16 24 N -0.29 -4.21 12.49 30.86 0.39 -3.82 16 25 N -0.36 -5.38 3.98 -64.32 -0.26 -5.64 16 26 C 0.09 0.96 11.28 59.85 0.67 1.63 16 27 C 0.18 3.14 7.51 -16.44 -0.12 3.02 16 28 Cl 0.05 0.99 27.81 -51.86 -1.44 -0.45 16 29 H 0.05 1.02 8.14 -51.93 -0.42 0.59 16 30 H 0.03 0.48 8.14 -51.93 -0.42 0.06 16 31 H 0.04 0.84 7.03 -51.93 -0.37 0.47 16 32 H 0.38 9.97 5.79 -40.82 -0.24 9.73 16 33 H 0.24 7.36 8.31 -40.82 -0.34 7.02 16 34 H 0.08 1.52 6.17 -51.93 -0.32 1.20 16 35 H 0.07 1.02 6.99 -51.93 -0.36 0.66 16 36 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 37 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 38 H 0.07 1.02 8.14 -51.93 -0.42 0.60 16 39 H 0.06 0.63 8.14 -51.93 -0.42 0.20 16 40 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 41 H 0.10 1.16 3.09 -51.93 -0.16 1.00 16 42 H 0.21 2.10 5.84 -52.48 -0.31 1.79 16 43 H 0.08 0.74 8.14 -51.93 -0.42 0.31 16 44 H 0.10 0.76 8.14 -51.93 -0.42 0.34 16 45 H 0.09 0.84 7.77 -51.93 -0.40 0.44 16 LS Contribution 361.09 15.07 5.44 5.44 Total: -1.00 -33.38 361.09 -8.00 -41.38 By element: Atomic # 1 Polarization: 12.47 SS G_CDS: -6.24 Total: 6.24 kcal Atomic # 6 Polarization: 5.40 SS G_CDS: -0.97 Total: 4.43 kcal Atomic # 7 Polarization: -65.22 SS G_CDS: 0.17 Total: -65.04 kcal Atomic # 8 Polarization: -10.32 SS G_CDS: 0.05 Total: -10.27 kcal Atomic # 14 Polarization: 23.30 SS G_CDS: -5.02 Total: 18.28 kcal Atomic # 17 Polarization: 0.99 SS G_CDS: -1.44 Total: -0.45 kcal Total LS contribution 5.44 Total: 5.44 kcal Total: -33.38 -8.00 -41.38 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001566528362.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 152.264 kcal (2) G-P(sol) polarization free energy of solvation -33.376 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 118.888 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.004 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.380 kcal (6) G-S(sol) free energy of system = (1) + (5) 110.884 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds