Wall clock time and date at job start Sat Apr 11 2020 05:59:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.08998 * 109.47272 * 2 1 4 4 N 1.46502 * 109.46644 * 119.99756 * 2 1 3 5 5 C 1.36931 * 120.00165 * 275.00059 * 4 2 1 6 6 H 1.08000 * 120.00073 * 359.97438 * 5 4 2 7 7 C 1.38812 * 120.00157 * 180.02562 * 5 4 2 8 8 N 1.31623 * 120.00057 * 359.97438 * 7 5 4 9 9 Si 1.86795 * 120.00108 * 179.97438 * 7 5 4 10 10 H 1.48500 * 109.47422 * 90.00102 * 9 7 5 11 11 H 1.48502 * 109.47061 * 209.99601 * 9 7 5 12 12 H 1.48497 * 109.47426 * 329.99389 * 9 7 5 13 13 C 1.53000 * 109.47004 * 239.99760 * 2 1 3 14 14 H 1.09000 * 109.70248 * 56.85023 * 13 2 1 15 15 C 1.53191 * 109.58520 * 296.49303 * 13 2 1 16 16 C 1.53041 * 109.31239 * 185.57790 * 15 13 2 17 17 C 1.53048 * 109.53448 * 61.36455 * 16 15 13 18 18 C 1.53619 * 109.24510 * 298.51162 * 17 16 15 19 19 N 1.46923 * 109.58356 * 177.20821 * 13 2 1 20 20 C 1.34781 * 120.63253 * 353.36942 * 19 13 2 21 21 O 1.21619 * 119.99610 * 356.06584 * 20 19 13 22 22 C 1.47301 * 120.00078 * 176.34156 * 20 19 13 23 23 C 1.41333 * 126.43506 * 28.79085 * 22 20 19 24 24 N 1.30416 * 108.04846 * 179.81689 * 23 22 20 25 25 N 1.39924 * 108.95851 * 0.44806 * 24 23 22 26 26 C 1.46499 * 125.74883 * 179.74945 * 25 24 23 27 27 C 1.34350 * 108.49719 * 359.71247 * 25 24 23 28 28 Cl 1.73610 * 126.31445 * 180.02562 * 27 25 24 29 29 H 1.09001 * 109.46988 * 307.01148 * 1 2 3 30 30 H 1.09002 * 109.46687 * 67.00747 * 1 2 3 31 31 H 1.08994 * 109.47560 * 187.00375 * 1 2 3 32 32 H 0.97003 * 119.99861 * 94.99665 * 4 2 1 33 33 H 0.96997 * 120.00331 * 180.02562 * 8 7 5 34 34 H 1.09004 * 109.50187 * 305.53210 * 15 13 2 35 35 H 1.08996 * 109.49779 * 65.62868 * 15 13 2 36 36 H 1.08993 * 109.46554 * 181.38307 * 16 15 13 37 37 H 1.08998 * 109.46329 * 301.35289 * 16 15 13 38 38 H 1.08998 * 109.49480 * 58.59452 * 17 16 15 39 39 H 1.09001 * 109.49514 * 178.68437 * 17 16 15 40 40 H 1.09004 * 109.74090 * 295.11883 * 18 17 16 41 41 H 1.09001 * 109.66409 * 174.54963 * 18 17 16 42 42 H 1.08007 * 125.97947 * 0.02562 * 23 22 20 43 43 H 1.08997 * 109.46911 * 269.95571 * 26 25 24 44 44 H 1.08997 * 109.47463 * 29.95537 * 26 25 24 45 45 H 1.09000 * 109.46987 * 149.95655 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 7 2.0183 -0.6906 1.1962 5 6 2.1490 -0.0075 2.3758 6 1 1.8926 1.0405 2.4242 7 6 2.6121 -0.6617 3.5091 8 7 2.9251 -1.9388 3.4501 9 14 2.7911 0.2704 5.1180 10 1 1.5237 0.1793 5.8865 11 1 3.8959 -0.3229 5.9134 12 1 3.0961 1.6955 4.8332 13 6 2.0400 -0.7213 -1.2492 14 1 1.6335 -0.2440 -2.1408 15 6 1.6042 -2.1893 -1.2084 16 6 2.2327 -2.9368 -2.3867 17 6 3.7579 -2.8824 -2.2724 18 6 4.2179 -1.4178 -2.3286 19 7 3.5077 -0.6646 -1.2859 20 6 4.1894 0.0688 -0.3838 21 8 3.5885 0.7484 0.4262 22 6 5.6624 0.0520 -0.3828 23 6 6.5001 -0.1673 -1.4997 24 7 7.7382 -0.1017 -1.0953 25 7 7.7541 0.1487 0.2812 26 6 8.9527 0.2869 1.1122 27 6 6.4850 0.2418 0.7122 28 17 5.9727 0.5452 2.3430 29 1 -0.3633 0.6186 0.8206 30 1 -0.3633 0.4014 -0.9461 31 1 -0.3634 -1.0199 0.1253 32 1 2.2489 -1.6318 1.1527 33 1 3.2484 -2.3961 4.2421 34 1 1.9345 -2.6412 -0.2730 35 1 0.5180 -2.2484 -1.2778 36 1 1.9045 -3.9761 -2.3742 37 1 1.9218 -2.4692 -3.3209 38 1 4.0680 -3.3277 -1.3271 39 1 4.2046 -3.4348 -3.0991 40 1 3.9853 -0.9961 -3.3065 41 1 5.2920 -1.3636 -2.1511 42 1 6.1723 -0.3532 -2.5120 43 1 9.2384 -0.6897 1.5030 44 1 9.7673 0.6902 0.5108 45 1 8.7440 0.9631 1.9413 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001566528362.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:59:37 Heat of formation + Delta-G solvation = 88.953210 kcal Electronic energy + Delta-G solvation = -29974.035014 eV Core-core repulsion = 26056.265783 eV Total energy + Delta-G solvation = -3917.769231 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.141 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -42.54344 -41.00616 -37.98211 -37.75300 -36.80116 -34.69010 -33.86559 -33.35976 -31.21727 -31.05364 -29.60573 -28.23053 -26.26701 -25.62064 -24.56993 -23.32878 -22.54432 -21.56345 -21.00976 -19.96696 -18.96074 -18.16705 -17.35450 -16.89714 -16.85304 -16.25038 -15.87186 -15.69173 -15.53337 -15.37803 -15.03253 -14.77389 -14.34090 -14.26390 -13.92411 -13.85631 -13.69668 -13.50396 -13.35400 -13.02507 -12.98178 -12.93577 -12.86655 -12.62430 -12.53539 -12.20461 -12.11387 -11.80886 -11.79828 -11.61570 -11.41736 -11.22416 -11.13496 -10.72222 -10.39750 -9.69870 -9.51787 -9.16195 -8.48810 -7.65270 -4.80443 0.32545 0.41879 1.16842 1.37163 1.41065 1.46486 1.61502 2.24052 2.70623 2.74258 3.38193 3.70617 3.84659 3.93564 4.03890 4.06630 4.18710 4.22453 4.26582 4.35641 4.37199 4.44826 4.53867 4.54396 4.57002 4.76845 4.82041 4.95015 5.00770 5.05002 5.13348 5.17404 5.21600 5.28137 5.35569 5.40460 5.50203 5.57430 5.66655 5.72366 5.79954 6.10827 6.32456 6.57267 6.86562 7.64720 7.81658 8.43623 8.68892 9.59989 Molecular weight = 340.14amu Principal moments of inertia in cm(-1) A = 0.008370 B = 0.007985 C = 0.004618 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3344.624864 B = 3505.781377 C = 6061.593120 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C 0.161 3.839 3 H 0.064 0.936 4 N -0.702 5.702 5 C -0.137 4.137 6 H 0.046 0.954 7 C -0.064 4.064 8 N -0.969 5.969 9 Si 0.908 3.092 10 H -0.298 1.298 11 H -0.302 1.302 12 H -0.284 1.284 13 C 0.154 3.846 14 H 0.093 0.907 15 C -0.126 4.126 16 C -0.109 4.109 17 C -0.131 4.131 18 C 0.081 3.919 19 N -0.605 5.605 20 C 0.569 3.431 21 O -0.500 6.500 22 C -0.276 4.276 23 C 0.081 3.919 24 N -0.286 5.286 25 N -0.357 5.357 26 C 0.082 3.918 27 C 0.157 3.843 28 Cl 0.018 6.982 29 H 0.026 0.974 30 H 0.068 0.932 31 H 0.042 0.958 32 H 0.368 0.632 33 H 0.235 0.765 34 H 0.034 0.966 35 H 0.076 0.924 36 H 0.065 0.935 37 H 0.086 0.914 38 H 0.033 0.967 39 H 0.100 0.900 40 H 0.101 0.899 41 H 0.103 0.897 42 H 0.245 0.755 43 H 0.094 0.906 44 H 0.122 0.878 45 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.763 0.630 -17.312 19.414 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C 0.053 3.947 3 H 0.082 0.918 4 N -0.342 5.342 5 C -0.271 4.271 6 H 0.064 0.936 7 C -0.254 4.254 8 N -0.625 5.625 9 Si 0.742 3.258 10 H -0.227 1.227 11 H -0.230 1.230 12 H -0.210 1.210 13 C 0.050 3.950 14 H 0.111 0.889 15 C -0.165 4.165 16 C -0.147 4.147 17 C -0.170 4.170 18 C -0.041 4.041 19 N -0.340 5.340 20 C 0.355 3.645 21 O -0.374 6.374 22 C -0.293 4.293 23 C -0.104 4.104 24 N -0.107 5.107 25 N -0.140 5.140 26 C -0.057 4.057 27 C -0.001 4.001 28 Cl 0.046 6.954 29 H 0.046 0.954 30 H 0.087 0.913 31 H 0.061 0.939 32 H 0.202 0.798 33 H 0.045 0.955 34 H 0.053 0.947 35 H 0.095 0.905 36 H 0.084 0.916 37 H 0.104 0.896 38 H 0.052 0.948 39 H 0.118 0.882 40 H 0.119 0.881 41 H 0.121 0.879 42 H 0.260 0.740 43 H 0.112 0.888 44 H 0.141 0.859 45 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges 9.778 1.168 -16.846 19.513 hybrid contribution -0.669 0.078 2.458 2.549 sum 9.109 1.247 -14.388 17.075 Atomic orbital electron populations 1.22421 0.98772 1.00431 1.00219 1.20842 0.90960 0.97288 0.85644 0.91812 1.42435 1.77076 1.09054 1.05644 1.19010 1.28686 0.92032 0.87373 0.93612 1.24639 1.06087 0.96208 0.98444 1.69720 1.56176 1.09246 1.27370 0.86018 0.76822 0.78547 0.84363 1.22709 1.22951 1.21023 1.21491 0.79076 0.96132 0.98257 0.88899 1.21895 1.00807 0.95041 0.98726 1.21479 0.94932 1.00342 0.97941 1.21965 0.96643 0.96456 1.01897 1.22720 0.98510 0.91465 0.91363 1.47693 1.06159 1.48697 1.31441 1.17344 0.85157 0.81156 0.80794 1.90957 1.67888 1.41376 1.37170 1.20273 0.95268 1.20599 0.93111 1.24820 0.88229 0.96799 1.00581 1.77186 1.21392 1.24222 0.87908 1.48758 1.04489 1.53723 1.07064 1.22392 0.83994 1.04942 0.94416 1.22310 0.87029 1.01390 0.89405 1.98514 1.88850 1.93469 1.14523 0.95431 0.91287 0.93890 0.79828 0.95533 0.94740 0.90523 0.91644 0.89556 0.94772 0.88162 0.88135 0.87924 0.74000 0.88787 0.85941 0.88686 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -5.72 9.04 71.98 0.65 -5.06 16 2 C 0.16 6.54 1.89 44.99 0.08 6.62 16 3 H 0.06 2.94 5.86 -8.13 -0.05 2.89 16 4 N -0.70 -35.47 3.52 -322.93 -1.14 -36.61 16 5 C -0.14 -7.91 8.07 84.03 0.68 -7.23 16 6 H 0.05 2.76 7.83 -2.91 -0.02 2.73 16 7 C -0.06 -3.79 5.50 84.86 0.47 -3.33 16 8 N -0.97 -60.59 13.06 21.65 0.28 -60.30 16 9 Si 0.91 49.40 29.55 68.60 2.03 51.43 16 10 H -0.30 -16.15 7.11 99.48 0.71 -15.44 16 11 H -0.30 -16.52 7.11 99.48 0.71 -15.82 16 12 H -0.28 -15.20 7.11 99.48 0.71 -14.49 16 13 C 0.15 4.79 2.73 44.97 0.12 4.91 16 14 H 0.09 2.35 8.14 -2.39 -0.02 2.33 16 15 C -0.13 -3.69 4.83 30.67 0.15 -3.55 16 16 C -0.11 -2.28 5.88 30.62 0.18 -2.10 16 17 C -0.13 -2.73 6.10 30.82 0.19 -2.55 16 18 C 0.08 1.68 5.62 86.51 0.49 2.16 16 19 N -0.60 -18.73 2.96 -798.18 -2.36 -21.09 16 20 C 0.57 22.07 7.08 86.63 0.61 22.69 16 21 O -0.50 -23.64 9.25 -4.09 -0.04 -23.68 16 22 C -0.28 -9.57 5.74 -20.12 -0.12 -9.69 16 23 C 0.08 2.06 9.75 85.66 0.84 2.89 16 24 N -0.29 -7.66 12.49 -56.26 -0.70 -8.36 16 25 N -0.36 -10.18 3.98 -357.41 -1.42 -11.60 16 26 C 0.08 1.56 11.28 127.77 1.44 3.00 16 27 C 0.16 5.62 7.51 84.32 0.63 6.25 16 28 Cl 0.02 0.75 27.81 -2.72 -0.08 0.68 16 29 H 0.03 1.09 8.14 -2.39 -0.02 1.07 16 30 H 0.07 1.96 8.14 -2.39 -0.02 1.94 16 31 H 0.04 1.55 7.03 -2.39 -0.02 1.54 16 32 H 0.37 20.13 5.79 -92.71 -0.54 19.59 16 33 H 0.24 14.71 8.31 -92.71 -0.77 13.94 16 34 H 0.03 1.33 6.17 -2.38 -0.01 1.31 16 35 H 0.08 2.10 6.99 -2.39 -0.02 2.08 16 36 H 0.06 1.30 8.14 -2.39 -0.02 1.28 16 37 H 0.09 1.37 8.14 -2.39 -0.02 1.35 16 38 H 0.03 0.95 8.14 -2.39 -0.02 0.93 16 39 H 0.10 1.43 8.14 -2.39 -0.02 1.41 16 40 H 0.10 1.38 8.14 -2.38 -0.02 1.36 16 41 H 0.10 2.03 3.09 -2.39 -0.01 2.02 16 42 H 0.24 3.89 5.84 -2.91 -0.02 3.87 16 43 H 0.09 1.57 8.14 -2.39 -0.02 1.55 16 44 H 0.12 1.65 8.14 -2.39 -0.02 1.63 16 45 H 0.09 1.72 7.77 -2.39 -0.02 1.70 16 Total: -1.00 -77.18 361.09 3.44 -73.73 By element: Atomic # 1 Polarization: 20.32 SS G_CDS: 0.46 Total: 20.78 kcal Atomic # 6 Polarization: 8.61 SS G_CDS: 6.41 Total: 15.02 kcal Atomic # 7 Polarization: -132.62 SS G_CDS: -5.34 Total: -137.96 kcal Atomic # 8 Polarization: -23.64 SS G_CDS: -0.04 Total: -23.68 kcal Atomic # 14 Polarization: 49.40 SS G_CDS: 2.03 Total: 51.43 kcal Atomic # 17 Polarization: 0.75 SS G_CDS: -0.08 Total: 0.68 kcal Total: -77.18 3.44 -73.73 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001566528362.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 162.688 kcal (2) G-P(sol) polarization free energy of solvation -77.179 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 85.509 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.444 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.734 kcal (6) G-S(sol) free energy of system = (1) + (5) 88.953 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds