Wall clock time and date at job start Sat Apr 11 2020 06:01:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31521 * 1 3 3 Si 1.86797 * 120.00007 * 2 1 4 4 H 1.48497 * 109.46957 * 239.99655 * 3 2 1 5 5 H 1.48498 * 109.47524 * 359.97438 * 3 2 1 6 6 H 1.48498 * 109.47041 * 119.99893 * 3 2 1 7 7 C 1.37877 * 119.99365 * 179.97438 * 2 1 3 8 8 H 1.08003 * 119.99038 * 179.97438 * 7 2 1 9 9 C 1.50694 * 120.00640 * 0.02562 * 7 2 1 10 10 N 1.46495 * 109.47303 * 179.97438 * 9 7 2 11 11 C 1.35600 * 124.78236 * 264.95758 * 10 9 7 12 12 C 1.36671 * 109.69744 * 180.02562 * 11 10 9 13 13 C 1.46382 * 126.78456 * 179.97438 * 12 11 10 14 14 C 1.35446 * 120.00222 * 0.02638 * 13 12 11 15 15 C 1.41498 * 120.00268 * 180.02562 * 14 13 12 16 16 O 1.21781 * 119.99588 * 359.97438 * 15 14 13 17 17 N 1.34778 * 120.00140 * 180.02562 * 15 14 13 18 18 C 1.47063 * 136.05610 * 359.62622 * 17 15 14 19 19 C 1.53243 * 88.07961 * 207.20654 * 18 17 15 20 20 C 1.53000 * 114.32296 * 220.47203 * 19 18 17 21 21 O 1.42909 * 109.46979 * 268.75916 * 20 19 18 22 22 C 1.47063 * 136.05632 * 180.02562 * 17 15 14 23 23 C 1.47512 * 106.42668 * 0.02562 * 12 11 10 24 24 C 1.39249 * 133.96845 * 180.02562 * 23 12 11 25 25 C 1.37776 * 119.67741 * 179.97438 * 24 23 12 26 26 C 1.38738 * 120.29846 * 0.02562 * 25 24 23 27 27 C 1.37781 * 120.62991 * 359.74825 * 26 25 24 28 28 C 1.37996 * 124.77880 * 85.00486 * 10 9 7 29 29 H 0.97004 * 119.99576 * 0.02562 * 1 2 3 30 30 H 1.09001 * 109.46865 * 59.99275 * 9 7 2 31 31 H 1.09001 * 109.46685 * 300.00184 * 9 7 2 32 32 H 1.08005 * 125.15238 * 0.07238 * 11 10 9 33 33 H 1.07999 * 119.99381 * 180.02562 * 13 12 11 34 34 H 1.08007 * 120.00067 * 359.97438 * 14 13 12 35 35 H 1.09001 * 113.47297 * 321.93729 * 18 17 15 36 36 H 1.08996 * 113.47077 * 92.37629 * 18 17 15 37 37 H 1.08998 * 114.01982 * 87.72162 * 19 18 17 38 38 H 1.08999 * 109.47593 * 28.75699 * 20 19 18 39 39 H 1.08998 * 109.47378 * 148.75744 * 20 19 18 40 40 H 0.96701 * 113.99503 * 180.02562 * 21 20 19 41 41 H 1.09000 * 113.46357 * 267.62239 * 22 17 15 42 42 H 1.08999 * 113.46848 * 38.05728 * 22 17 15 43 43 H 1.08000 * 120.16143 * 359.97196 * 24 23 12 44 44 H 1.08001 * 119.85019 * 180.02562 * 25 24 23 45 45 H 1.07999 * 119.68738 * 180.02562 * 26 25 24 46 46 H 1.07997 * 120.03507 * 180.02562 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1030 1.6963 -1.2124 5 1 1.2843 2.7465 -0.0006 6 1 3.1029 1.6964 1.2125 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2510 -2.4992 0.0005 10 7 2.2029 -3.6127 0.0005 11 6 2.6312 -4.2643 -1.1089 12 6 3.5120 -5.2474 -0.7545 13 6 4.1993 -6.1747 -1.6548 14 6 3.9856 -6.1054 -2.9905 15 6 4.6495 -7.0021 -3.8607 16 8 5.4135 -7.8359 -3.4087 17 7 4.4372 -6.9329 -5.1899 18 6 3.6196 -6.1057 -6.0899 19 6 3.5967 -7.2846 -7.0687 20 6 3.7484 -6.8866 -8.5382 21 8 2.4560 -6.6760 -9.1105 22 6 4.9159 -7.6559 -6.3777 23 6 3.6322 -5.1901 0.7146 24 6 4.3606 -5.9153 1.6540 25 6 4.2494 -5.6042 2.9916 26 6 3.4161 -4.5744 3.4037 27 6 2.6932 -3.8457 2.4845 28 6 2.7894 -4.1469 1.1297 29 1 -0.4850 0.8401 -0.0004 30 1 0.6246 -2.5570 -0.8896 31 1 0.6240 -2.5566 0.8903 32 1 2.3235 -4.0398 -2.1195 33 1 4.8768 -6.9140 -1.2539 34 1 3.3077 -5.3663 -3.3913 35 1 2.6381 -5.8618 -5.6835 36 1 4.1460 -5.2322 -6.4746 37 1 2.7859 -7.9915 -6.8929 38 1 4.3306 -5.9678 -8.6076 39 1 4.2600 -7.6826 -9.0793 40 1 2.4757 -6.4207 -10.0430 41 1 5.7914 -7.1998 -6.8398 42 1 5.0342 -8.7272 -6.2154 43 1 5.0096 -6.7177 1.3357 44 1 4.8134 -6.1646 3.7225 45 1 3.3366 -4.3387 4.4547 46 1 2.0478 -3.0458 2.8160 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000122679202.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:01:21 Heat of formation + Delta-G solvation = 5.704618 kcal Electronic energy + Delta-G solvation = -27745.735454 eV Core-core repulsion = 23794.496391 eV Total energy + Delta-G solvation = -3951.239063 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.157 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -42.26128 -41.50918 -39.33372 -37.99783 -37.20903 -35.89145 -34.76970 -32.69268 -31.60020 -31.19623 -29.72115 -28.61439 -27.06830 -26.95993 -25.30348 -24.07880 -23.24557 -22.16709 -21.59079 -20.32796 -19.42661 -18.86418 -18.48722 -18.18600 -17.50242 -17.42473 -16.98000 -16.63219 -16.42113 -16.26616 -15.77780 -15.65928 -15.10825 -14.94363 -14.75357 -14.49563 -14.28485 -14.20937 -13.81488 -13.72845 -13.52387 -13.39833 -13.31550 -13.17347 -12.75968 -12.72345 -12.52457 -12.34747 -12.29297 -12.01182 -11.91344 -11.72548 -11.69952 -11.21055 -11.01556 -10.77549 -10.72312 -10.09787 -9.70091 -9.12847 -8.48540 -8.16621 -6.55371 -0.22938 0.40197 0.83242 1.36367 1.37007 1.45895 1.84259 1.91337 2.08766 2.32673 2.56084 2.93382 3.05441 3.06372 3.58820 3.64061 3.76431 3.82555 3.96647 4.08305 4.19015 4.30351 4.32224 4.35424 4.39139 4.44375 4.52277 4.56707 4.61113 4.68057 4.69285 4.71616 4.81743 4.84240 4.84976 4.88830 4.96295 5.11146 5.27587 5.44519 5.48465 5.50283 5.64812 5.71490 5.76331 5.82775 5.99586 6.29985 6.39013 6.60153 6.69397 6.99446 7.16758 7.17159 8.68517 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.008458 B = 0.002823 C = 0.002218 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3309.657222 B = 9916.733333 C =12623.208400 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.917 5.917 2 C 0.025 3.975 3 Si 0.966 3.034 4 H -0.268 1.268 5 H -0.275 1.275 6 H -0.272 1.272 7 C -0.558 4.558 8 H 0.052 0.948 9 C 0.248 3.752 10 N -0.454 5.454 11 C 0.110 3.890 12 C -0.215 4.215 13 C 0.074 3.926 14 C -0.274 4.274 15 C 0.584 3.416 16 O -0.602 6.602 17 N -0.658 5.658 18 C 0.102 3.898 19 C -0.114 4.114 20 C 0.092 3.908 21 O -0.596 6.596 22 C 0.109 3.891 23 C -0.105 4.105 24 C -0.091 4.091 25 C -0.137 4.137 26 C -0.107 4.107 27 C -0.133 4.133 28 C 0.065 3.935 29 H 0.273 0.727 30 H 0.042 0.958 31 H 0.027 0.973 32 H 0.187 0.813 33 H 0.128 0.872 34 H 0.133 0.867 35 H 0.080 0.920 36 H 0.105 0.895 37 H 0.100 0.900 38 H 0.068 0.932 39 H 0.071 0.929 40 H 0.400 0.600 41 H 0.106 0.894 42 H 0.074 0.926 43 H 0.140 0.860 44 H 0.157 0.843 45 H 0.151 0.849 46 H 0.108 0.892 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.411 -11.825 -12.451 18.703 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.555 5.555 2 C -0.176 4.176 3 Si 0.790 3.210 4 H -0.193 1.193 5 H -0.199 1.199 6 H -0.198 1.198 7 C -0.596 4.596 8 H 0.071 0.929 9 C 0.129 3.871 10 N -0.129 5.129 11 C -0.024 4.024 12 C -0.222 4.222 13 C 0.053 3.947 14 C -0.295 4.295 15 C 0.381 3.619 16 O -0.488 6.488 17 N -0.392 5.392 18 C -0.020 4.020 19 C -0.133 4.133 20 C 0.014 3.986 21 O -0.405 6.405 22 C -0.013 4.013 23 C -0.109 4.109 24 C -0.110 4.110 25 C -0.156 4.156 26 C -0.126 4.126 27 C -0.154 4.154 28 C -0.040 4.040 29 H 0.082 0.918 30 H 0.060 0.940 31 H 0.045 0.955 32 H 0.204 0.796 33 H 0.145 0.855 34 H 0.151 0.849 35 H 0.098 0.902 36 H 0.123 0.877 37 H 0.118 0.882 38 H 0.086 0.914 39 H 0.089 0.911 40 H 0.250 0.750 41 H 0.124 0.876 42 H 0.093 0.907 43 H 0.157 0.843 44 H 0.175 0.825 45 H 0.169 0.831 46 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges 7.212 -11.989 -11.374 18.031 hybrid contribution 0.050 1.377 -0.456 1.452 sum 7.262 -10.612 -11.830 17.473 Atomic orbital electron populations 1.69996 1.07307 1.28923 1.49255 1.25704 0.95715 1.02633 0.93590 0.85476 0.78380 0.78039 0.79089 1.19287 1.19939 1.19760 1.21446 0.93241 0.91085 1.53802 0.92938 1.19369 0.87107 0.82337 0.98300 1.44541 1.35984 1.27575 1.04811 1.22583 0.95334 0.92053 0.92458 1.18988 1.08035 1.03809 0.91379 1.21510 0.90373 0.91191 0.91620 1.21458 1.08981 1.05465 0.93641 1.16686 0.80859 0.83572 0.80801 1.90769 1.40722 1.40945 1.76318 1.49530 1.47450 1.38313 1.03864 1.23307 0.96054 0.95546 0.87095 1.22798 0.98091 0.98267 0.94174 1.22029 0.84777 1.00862 0.90965 1.86447 1.29685 1.92502 1.31833 1.23061 0.97492 0.98710 0.82042 1.19345 1.00316 0.98084 0.93150 1.20719 0.98647 0.99271 0.92336 1.21245 1.00232 0.98628 0.95463 1.21110 0.96344 0.95609 0.99564 1.20355 1.03213 1.01907 0.89898 1.18700 0.98820 0.97089 0.89412 0.91761 0.94034 0.95525 0.79597 0.85451 0.84895 0.90174 0.87711 0.88203 0.91361 0.91122 0.74984 0.87588 0.90732 0.84265 0.82549 0.83146 0.87374 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -50.34 13.29 21.45 0.28 -50.05 16 2 C 0.03 1.32 5.46 84.65 0.46 1.78 16 3 Si 0.97 41.72 29.54 68.60 2.03 43.74 16 4 H -0.27 -11.27 7.11 99.48 0.71 -10.56 16 5 H -0.27 -11.39 7.11 99.48 0.71 -10.68 16 6 H -0.27 -11.66 7.11 99.48 0.71 -10.95 16 7 C -0.56 -29.73 9.39 25.60 0.24 -29.49 16 8 H 0.05 2.88 7.81 -2.91 -0.02 2.86 16 9 C 0.25 12.23 5.71 85.63 0.49 12.72 16 10 N -0.45 -19.82 2.73 -518.94 -1.42 -21.24 16 11 C 0.11 4.17 10.65 83.74 0.89 5.06 16 12 C -0.21 -7.72 6.24 -19.08 -0.12 -7.84 16 13 C 0.07 2.39 9.68 23.75 0.23 2.62 16 14 C -0.27 -8.19 9.18 22.43 0.21 -7.99 16 15 C 0.58 18.35 7.81 85.04 0.66 19.01 16 16 O -0.60 -23.10 16.88 -4.61 -0.08 -23.18 16 17 N -0.66 -15.66 3.69 -869.74 -3.21 -18.87 16 18 C 0.10 1.71 7.78 83.09 0.65 2.36 16 19 C -0.11 -1.57 4.34 -10.55 -0.05 -1.62 16 20 C 0.09 0.80 6.96 71.98 0.50 1.30 16 21 O -0.60 -6.99 13.66 -148.98 -2.04 -9.03 16 22 C 0.11 1.80 8.20 83.17 0.68 2.49 16 23 C -0.11 -3.95 6.36 -20.07 -0.13 -4.07 16 24 C -0.09 -2.83 10.09 22.40 0.23 -2.60 16 25 C -0.14 -3.72 10.03 22.28 0.22 -3.50 16 26 C -0.11 -3.21 10.01 22.28 0.22 -2.99 16 27 C -0.13 -5.11 9.97 22.37 0.22 -4.89 16 28 C 0.06 2.72 6.79 38.91 0.26 2.98 16 29 H 0.27 14.11 8.31 -92.71 -0.77 13.34 16 30 H 0.04 2.08 8.11 -2.39 -0.02 2.06 16 31 H 0.03 1.40 8.14 -2.39 -0.02 1.38 16 32 H 0.19 5.94 7.19 -2.91 -0.02 5.92 16 33 H 0.13 4.10 7.45 -2.91 -0.02 4.08 16 34 H 0.13 3.51 6.69 -2.91 -0.02 3.49 16 35 H 0.08 1.40 8.14 -2.39 -0.02 1.38 16 36 H 0.10 1.38 7.88 -2.39 -0.02 1.36 16 37 H 0.10 1.64 8.14 -2.39 -0.02 1.62 16 38 H 0.07 0.40 7.81 -2.39 -0.02 0.38 16 39 H 0.07 0.38 8.14 -2.39 -0.02 0.36 16 40 H 0.40 1.05 9.12 -74.06 -0.68 0.37 16 41 H 0.11 1.28 8.10 -2.39 -0.02 1.26 16 42 H 0.07 1.32 8.14 -2.39 -0.02 1.30 16 43 H 0.14 3.60 8.06 -2.91 -0.02 3.58 16 44 H 0.16 3.00 8.06 -2.91 -0.02 2.98 16 45 H 0.15 3.47 8.06 -2.91 -0.02 3.45 16 46 H 0.11 4.34 8.06 -2.91 -0.02 4.31 16 Total: -1.00 -71.80 397.16 1.77 -70.02 By element: Atomic # 1 Polarization: 22.95 SS G_CDS: 0.32 Total: 23.27 kcal Atomic # 6 Polarization: -20.55 SS G_CDS: 5.88 Total: -14.67 kcal Atomic # 7 Polarization: -85.82 SS G_CDS: -4.34 Total: -90.16 kcal Atomic # 8 Polarization: -30.09 SS G_CDS: -2.11 Total: -32.20 kcal Atomic # 14 Polarization: 41.72 SS G_CDS: 2.03 Total: 43.74 kcal Total: -71.80 1.77 -70.02 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000122679202.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 75.729 kcal (2) G-P(sol) polarization free energy of solvation -71.798 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.931 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.774 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.025 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.705 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds