Wall clock time and date at job start Sat Apr 11 2020 06:01:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46900 * 1 3 3 C 1.46897 * 111.00253 * 2 1 4 4 C 1.46900 * 111.00144 * 123.95439 * 2 1 3 5 5 C 1.53003 * 109.47064 * 169.99616 * 4 2 1 6 6 C 1.53001 * 109.47064 * 180.02562 * 5 4 2 7 7 N 1.46500 * 109.47256 * 180.02562 * 6 5 4 8 8 C 1.46499 * 120.00130 * 270.00009 * 7 6 5 9 9 C 1.50694 * 109.47006 * 275.89147 * 8 7 6 10 10 H 1.07997 * 120.00197 * 359.97438 * 9 8 7 11 11 C 1.37877 * 120.00093 * 179.97438 * 9 8 7 12 12 N 1.31517 * 119.99909 * 0.02562 * 11 9 8 13 13 Si 1.86797 * 120.00239 * 179.97438 * 11 9 8 14 14 H 1.48502 * 109.47313 * 60.00396 * 13 11 9 15 15 H 1.48504 * 109.46973 * 179.97438 * 13 11 9 16 16 H 1.48490 * 109.47222 * 299.99836 * 13 11 9 17 17 C 1.34778 * 119.99709 * 89.99737 * 7 6 5 18 18 O 1.21506 * 120.00262 * 4.82562 * 17 7 6 19 19 C 1.48175 * 119.99765 * 184.82229 * 17 7 6 20 20 C 1.39570 * 120.87591 * 132.64807 * 19 17 7 21 21 C 1.39036 * 118.96438 * 180.27477 * 20 19 17 22 22 N 1.39034 * 119.63455 * 179.74245 * 21 20 19 23 23 N 1.32358 * 120.73249 * 359.76960 * 21 20 19 24 24 C 1.31977 * 121.93031 * 359.97438 * 23 21 20 25 25 Cl 1.73601 * 119.52018 * 179.97438 * 24 23 21 26 26 C 1.38173 * 120.96224 * 359.97438 * 24 23 21 27 27 H 1.08999 * 109.47112 * 296.04105 * 1 2 3 28 28 H 1.09002 * 109.47267 * 56.04475 * 1 2 3 29 29 H 1.09000 * 109.47125 * 176.04529 * 1 2 3 30 30 H 1.08993 * 109.47542 * 183.95650 * 3 2 1 31 31 H 1.08999 * 109.47108 * 303.95905 * 3 2 1 32 32 H 1.09003 * 109.47055 * 63.95590 * 3 2 1 33 33 H 1.09005 * 109.46971 * 50.00429 * 4 2 1 34 34 H 1.08995 * 109.47301 * 289.99885 * 4 2 1 35 35 H 1.09004 * 109.47066 * 60.00411 * 5 4 2 36 36 H 1.08995 * 109.47281 * 300.00281 * 5 4 2 37 37 H 1.08995 * 109.47181 * 60.00195 * 6 5 4 38 38 H 1.09002 * 109.46910 * 300.00464 * 6 5 4 39 39 H 1.09008 * 109.46866 * 35.89178 * 8 7 6 40 40 H 1.08995 * 109.47077 * 155.88937 * 8 7 6 41 41 H 0.97000 * 120.00168 * 180.02562 * 12 11 9 42 42 H 1.07999 * 120.51517 * 0.02562 * 20 19 17 43 43 H 0.96998 * 119.99859 * 180.02562 * 22 21 20 44 44 H 0.96996 * 119.99547 * 0.02616 * 22 21 20 45 45 H 1.08001 * 120.41881 * 180.02562 * 26 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9955 1.3714 0.0000 4 6 1.9955 -0.7660 1.1376 5 6 3.5045 -0.9554 0.9702 6 6 4.0527 -1.7537 2.1547 7 7 5.4977 -1.9346 1.9948 8 6 6.0150 -3.1052 1.2819 9 6 6.1002 -4.2735 2.2298 10 1 5.7996 -4.1558 3.2604 11 6 6.5620 -5.4928 1.7815 12 7 6.9286 -5.6361 0.5266 13 14 6.6683 -6.9409 2.9567 14 1 5.3168 -7.2441 3.4922 15 1 7.1914 -8.1279 2.2336 16 1 7.5807 -6.6022 4.0782 17 6 6.3511 -1.0240 2.5036 18 8 5.9278 -0.1002 3.1698 19 6 7.8058 -1.1495 2.2508 20 6 8.5576 -0.0503 1.8329 21 6 9.9187 -0.2143 1.6016 22 7 10.6799 0.8700 1.1798 23 7 10.4978 -1.3913 1.7780 24 6 9.8189 -2.4504 2.1771 25 17 10.6418 -3.9645 2.3876 26 6 8.4628 -2.3718 2.4297 27 1 -0.3633 0.4512 0.9233 28 1 -0.3634 0.5740 -0.8524 29 1 -0.3633 -1.0252 -0.0709 30 1 3.0828 1.3432 -0.0709 31 1 1.5898 1.9163 -0.8524 32 1 1.7045 1.8723 0.9233 33 1 1.5090 -1.7407 1.1755 34 1 1.7976 -0.2248 2.0628 35 1 3.9910 0.0193 0.9322 36 1 3.7024 -1.4966 0.0450 37 1 3.5662 -2.7284 2.1923 38 1 3.8547 -1.2129 3.0801 39 1 5.3458 -3.3538 0.4580 40 1 7.0072 -2.8825 0.8895 41 1 7.2531 -6.4940 0.2110 42 1 8.0885 0.9116 1.6876 43 1 11.6299 0.7615 1.0165 44 1 10.2609 1.7349 1.0489 45 1 7.9159 -3.2440 2.7562 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000171468990.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:01:32 Heat of formation + Delta-G solvation = 3.627893 kcal Electronic energy + Delta-G solvation = -27767.568846 eV Core-core repulsion = 23846.099631 eV Total energy + Delta-G solvation = -3921.469215 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.141 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -40.28870 -38.83197 -37.59153 -36.24213 -35.36026 -34.38491 -33.06015 -32.27377 -31.23642 -28.87153 -27.64274 -27.44014 -26.32402 -24.11635 -23.06429 -22.81957 -22.14910 -20.68230 -19.14731 -17.50007 -17.09579 -16.58434 -16.09152 -15.80562 -15.56478 -15.33415 -15.03275 -14.86223 -14.65735 -14.50910 -14.28602 -14.16144 -13.73814 -13.69409 -12.79210 -12.46561 -12.39998 -12.20688 -11.94632 -11.82095 -11.76932 -11.56789 -11.40429 -11.25834 -11.16308 -10.92840 -10.84280 -10.73920 -10.31160 -10.25036 -10.04591 -9.81508 -9.73371 -9.34331 -9.03474 -8.59377 -8.37708 -7.86150 -7.57493 -6.22807 -4.31552 1.21264 1.61607 2.23168 3.22080 3.23719 3.29488 3.32160 3.60023 3.77075 4.02743 4.14391 4.30365 4.88483 5.07254 5.09041 5.11815 5.24543 5.26445 5.34256 5.41267 5.49412 5.52116 5.60523 5.64961 5.73282 5.77005 5.80543 5.89563 5.97022 6.08046 6.13545 6.40966 6.52037 6.56392 6.69525 6.93616 7.00682 7.03276 7.15434 7.31097 7.41999 7.50166 7.69758 7.97386 8.17104 8.29301 8.66397 8.82591 9.35738 10.82964 Molecular weight = 340.14amu Principal moments of inertia in cm(-1) A = 0.008949 B = 0.004284 C = 0.003093 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3127.943530 B = 6534.820752 C = 9051.494860 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 N -0.548 5.548 3 C 0.022 3.978 4 C 0.059 3.941 5 C -0.129 4.129 6 C 0.121 3.879 7 N -0.580 5.580 8 C 0.229 3.771 9 C -0.549 4.549 10 H 0.064 0.936 11 C 0.077 3.923 12 N -0.876 5.876 13 Si 0.887 3.113 14 H -0.275 1.275 15 H -0.285 1.285 16 H -0.271 1.271 17 C 0.560 3.440 18 O -0.561 6.561 19 C -0.024 4.024 20 C -0.193 4.193 21 C 0.406 3.594 22 N -0.854 5.854 23 N -0.536 5.536 24 C 0.215 3.785 25 Cl -0.030 7.030 26 C -0.158 4.158 27 H 0.023 0.977 28 H 0.065 0.935 29 H 0.068 0.932 30 H 0.072 0.928 31 H 0.064 0.936 32 H 0.024 0.976 33 H 0.077 0.923 34 H 0.034 0.966 35 H 0.061 0.939 36 H 0.074 0.926 37 H 0.084 0.916 38 H 0.073 0.927 39 H 0.038 0.962 40 H 0.046 0.954 41 H 0.268 0.732 42 H 0.137 0.863 43 H 0.402 0.598 44 H 0.407 0.593 45 H 0.188 0.812 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.107 10.668 -0.801 10.903 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 N -0.272 5.272 3 C -0.126 4.126 4 C -0.069 4.069 5 C -0.168 4.168 6 C -0.002 4.002 7 N -0.309 5.309 8 C 0.109 3.891 9 C -0.587 4.587 10 H 0.082 0.918 11 C -0.129 4.129 12 N -0.512 5.512 13 Si 0.714 3.286 14 H -0.201 1.201 15 H -0.210 1.210 16 H -0.196 1.196 17 C 0.347 3.653 18 O -0.442 6.442 19 C -0.035 4.035 20 C -0.219 4.219 21 C 0.168 3.832 22 N -0.400 5.400 23 N -0.257 5.257 24 C 0.052 3.948 25 Cl -0.002 7.002 26 C -0.181 4.181 27 H 0.041 0.959 28 H 0.084 0.916 29 H 0.087 0.913 30 H 0.091 0.909 31 H 0.082 0.918 32 H 0.042 0.958 33 H 0.095 0.905 34 H 0.052 0.948 35 H 0.080 0.920 36 H 0.093 0.907 37 H 0.102 0.898 38 H 0.091 0.909 39 H 0.056 0.944 40 H 0.064 0.936 41 H 0.078 0.922 42 H 0.155 0.845 43 H 0.231 0.769 44 H 0.237 0.763 45 H 0.205 0.795 Dipole moment (debyes) X Y Z Total from point charges -1.208 10.476 -1.175 10.611 hybrid contribution -0.638 -0.334 1.177 1.380 sum -1.846 10.142 0.002 10.309 Atomic orbital electron populations 1.22369 0.87604 1.02216 1.00138 1.61963 1.07533 1.13938 1.43734 1.22425 1.01434 0.88733 1.00022 1.22074 0.95899 0.98113 0.90838 1.21947 0.93836 1.00978 1.00058 1.21262 0.80634 1.00665 0.97676 1.48130 1.05371 1.23532 1.53848 1.19718 0.96003 0.81022 0.92333 1.21338 1.45604 0.94803 0.96936 0.91823 1.24879 0.94471 0.98436 0.95106 1.69900 1.41442 1.25455 1.14443 0.86700 0.78792 0.81822 0.81249 1.20059 1.20992 1.19569 1.18102 0.85360 0.82096 0.79783 1.90691 1.78562 1.34321 1.40588 1.19975 0.94283 0.92909 0.96370 1.21284 0.92682 0.99901 1.07996 1.17720 0.87646 0.86265 0.91549 1.42039 1.11697 1.09214 1.77033 1.66066 1.40939 0.98379 1.20366 1.21021 0.89058 0.87348 0.97378 1.98393 1.80023 1.26756 1.95004 1.22838 0.93029 1.00251 1.01955 0.95891 0.91623 0.91314 0.90906 0.91761 0.95774 0.90492 0.94779 0.91997 0.90691 0.89757 0.90886 0.94425 0.93591 0.92220 0.84517 0.76858 0.76264 0.79523 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.25 9.57 60.06 0.57 0.83 16 2 N -0.55 -6.85 5.02 -251.26 -1.26 -8.11 16 3 C 0.02 0.25 9.32 60.06 0.56 0.81 16 4 C 0.06 0.77 4.96 -3.82 -0.02 0.75 16 5 C -0.13 -1.98 5.46 -26.73 -0.15 -2.13 16 6 C 0.12 2.11 5.46 -4.04 -0.02 2.08 16 7 N -0.58 -11.69 2.46 -176.06 -0.43 -12.12 16 8 C 0.23 5.17 4.67 -5.20 -0.02 5.14 16 9 C -0.55 -13.27 6.89 -34.44 -0.24 -13.51 16 10 H 0.06 1.56 7.81 -52.49 -0.41 1.15 16 11 C 0.08 1.91 5.46 -17.82 -0.10 1.81 16 12 N -0.88 -22.92 13.29 55.43 0.74 -22.18 16 13 Si 0.89 19.75 29.54 -169.99 -5.02 14.72 16 14 H -0.28 -6.09 7.11 56.52 0.40 -5.69 16 15 H -0.28 -6.35 7.11 56.52 0.40 -5.95 16 16 H -0.27 -5.98 7.11 56.52 0.40 -5.58 16 17 C 0.56 11.52 7.31 -12.18 -0.09 11.43 16 18 O -0.56 -12.25 16.58 5.36 0.09 -12.16 16 19 C -0.02 -0.47 4.98 -104.69 -0.52 -0.99 16 20 C -0.19 -3.24 9.65 -38.79 -0.37 -3.61 16 21 C 0.41 6.45 7.74 -155.06 -1.20 5.25 16 22 N -0.85 -9.45 9.07 31.11 0.28 -9.17 16 23 N -0.54 -9.72 10.34 -9.60 -0.10 -9.82 16 24 C 0.21 4.21 7.27 -17.51 -0.13 4.08 16 25 Cl -0.03 -0.57 29.10 -51.86 -1.51 -2.08 16 26 C -0.16 -3.24 7.38 -38.98 -0.29 -3.53 16 27 H 0.02 0.22 8.14 -51.93 -0.42 -0.21 16 28 H 0.06 0.58 8.12 -51.93 -0.42 0.16 16 29 H 0.07 0.66 8.12 -51.93 -0.42 0.23 16 30 H 0.07 0.88 6.47 -51.93 -0.34 0.54 16 31 H 0.06 0.63 8.12 -51.93 -0.42 0.21 16 32 H 0.02 0.26 8.14 -51.93 -0.42 -0.16 16 33 H 0.08 0.96 8.06 -51.93 -0.42 0.54 16 34 H 0.03 0.44 8.12 -51.93 -0.42 0.01 16 35 H 0.06 0.99 6.55 -51.93 -0.34 0.65 16 36 H 0.07 1.24 8.14 -51.93 -0.42 0.82 16 37 H 0.08 1.45 8.07 -51.93 -0.42 1.03 16 38 H 0.07 1.27 7.36 -51.93 -0.38 0.89 16 39 H 0.04 0.90 8.12 -51.92 -0.42 0.48 16 40 H 0.05 1.11 5.38 -51.93 -0.28 0.83 16 41 H 0.27 6.78 8.31 -40.82 -0.34 6.44 16 42 H 0.14 2.00 8.06 -52.49 -0.42 1.58 16 43 H 0.40 3.93 8.95 -40.82 -0.37 3.56 16 44 H 0.41 3.34 8.82 -40.82 -0.36 2.98 16 45 H 0.19 4.22 4.81 -52.49 -0.25 3.96 16 LS Contribution 386.52 15.07 5.82 5.82 Total: -1.00 -28.30 386.52 -9.90 -38.20 By element: Atomic # 1 Polarization: 14.98 SS G_CDS: -6.50 Total: 8.48 kcal Atomic # 6 Polarization: 10.43 SS G_CDS: -2.01 Total: 8.42 kcal Atomic # 7 Polarization: -60.64 SS G_CDS: -0.77 Total: -61.41 kcal Atomic # 8 Polarization: -12.25 SS G_CDS: 0.09 Total: -12.16 kcal Atomic # 14 Polarization: 19.75 SS G_CDS: -5.02 Total: 14.72 kcal Atomic # 17 Polarization: -0.57 SS G_CDS: -1.51 Total: -2.08 kcal Total LS contribution 5.82 Total: 5.82 kcal Total: -28.30 -9.90 -38.20 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000171468990.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.829 kcal (2) G-P(sol) polarization free energy of solvation -28.302 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 13.527 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.900 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.201 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.628 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds