Wall clock time and date at job start Sat Apr 11 2020 06:01:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46900 * 1 3 3 C 1.46897 * 111.00253 * 2 1 4 4 C 1.46900 * 111.00144 * 123.95439 * 2 1 3 5 5 C 1.53003 * 109.47064 * 169.99616 * 4 2 1 6 6 C 1.53001 * 109.47064 * 180.02562 * 5 4 2 7 7 N 1.46500 * 109.47256 * 180.02562 * 6 5 4 8 8 C 1.46499 * 120.00130 * 270.00009 * 7 6 5 9 9 C 1.50694 * 109.47006 * 275.89147 * 8 7 6 10 10 H 1.07997 * 120.00197 * 359.97438 * 9 8 7 11 11 C 1.37877 * 120.00093 * 179.97438 * 9 8 7 12 12 N 1.31517 * 119.99909 * 0.02562 * 11 9 8 13 13 Si 1.86797 * 120.00239 * 179.97438 * 11 9 8 14 14 H 1.48502 * 109.47313 * 60.00396 * 13 11 9 15 15 H 1.48504 * 109.46973 * 179.97438 * 13 11 9 16 16 H 1.48490 * 109.47222 * 299.99836 * 13 11 9 17 17 C 1.34778 * 119.99709 * 89.99737 * 7 6 5 18 18 O 1.21506 * 120.00262 * 4.82562 * 17 7 6 19 19 C 1.48175 * 119.99765 * 184.82229 * 17 7 6 20 20 C 1.39570 * 120.87591 * 132.64807 * 19 17 7 21 21 C 1.39036 * 118.96438 * 180.27477 * 20 19 17 22 22 N 1.39034 * 119.63455 * 179.74245 * 21 20 19 23 23 N 1.32358 * 120.73249 * 359.76960 * 21 20 19 24 24 C 1.31977 * 121.93031 * 359.97438 * 23 21 20 25 25 Cl 1.73601 * 119.52018 * 179.97438 * 24 23 21 26 26 C 1.38173 * 120.96224 * 359.97438 * 24 23 21 27 27 H 1.08999 * 109.47112 * 296.04105 * 1 2 3 28 28 H 1.09002 * 109.47267 * 56.04475 * 1 2 3 29 29 H 1.09000 * 109.47125 * 176.04529 * 1 2 3 30 30 H 1.08993 * 109.47542 * 183.95650 * 3 2 1 31 31 H 1.08999 * 109.47108 * 303.95905 * 3 2 1 32 32 H 1.09003 * 109.47055 * 63.95590 * 3 2 1 33 33 H 1.09005 * 109.46971 * 50.00429 * 4 2 1 34 34 H 1.08995 * 109.47301 * 289.99885 * 4 2 1 35 35 H 1.09004 * 109.47066 * 60.00411 * 5 4 2 36 36 H 1.08995 * 109.47281 * 300.00281 * 5 4 2 37 37 H 1.08995 * 109.47181 * 60.00195 * 6 5 4 38 38 H 1.09002 * 109.46910 * 300.00464 * 6 5 4 39 39 H 1.09008 * 109.46866 * 35.89178 * 8 7 6 40 40 H 1.08995 * 109.47077 * 155.88937 * 8 7 6 41 41 H 0.97000 * 120.00168 * 180.02562 * 12 11 9 42 42 H 1.07999 * 120.51517 * 0.02562 * 20 19 17 43 43 H 0.96998 * 119.99859 * 180.02562 * 22 21 20 44 44 H 0.96996 * 119.99547 * 0.02616 * 22 21 20 45 45 H 1.08001 * 120.41881 * 180.02562 * 26 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9955 1.3714 0.0000 4 6 1.9955 -0.7660 1.1376 5 6 3.5045 -0.9554 0.9702 6 6 4.0527 -1.7537 2.1547 7 7 5.4977 -1.9346 1.9948 8 6 6.0150 -3.1052 1.2819 9 6 6.1002 -4.2735 2.2298 10 1 5.7996 -4.1558 3.2604 11 6 6.5620 -5.4928 1.7815 12 7 6.9286 -5.6361 0.5266 13 14 6.6683 -6.9409 2.9567 14 1 5.3168 -7.2441 3.4922 15 1 7.1914 -8.1279 2.2336 16 1 7.5807 -6.6022 4.0782 17 6 6.3511 -1.0240 2.5036 18 8 5.9278 -0.1002 3.1698 19 6 7.8058 -1.1495 2.2508 20 6 8.5576 -0.0503 1.8329 21 6 9.9187 -0.2143 1.6016 22 7 10.6799 0.8700 1.1798 23 7 10.4978 -1.3913 1.7780 24 6 9.8189 -2.4504 2.1771 25 17 10.6418 -3.9645 2.3876 26 6 8.4628 -2.3718 2.4297 27 1 -0.3633 0.4512 0.9233 28 1 -0.3634 0.5740 -0.8524 29 1 -0.3633 -1.0252 -0.0709 30 1 3.0828 1.3432 -0.0709 31 1 1.5898 1.9163 -0.8524 32 1 1.7045 1.8723 0.9233 33 1 1.5090 -1.7407 1.1755 34 1 1.7976 -0.2248 2.0628 35 1 3.9910 0.0193 0.9322 36 1 3.7024 -1.4966 0.0450 37 1 3.5662 -2.7284 2.1923 38 1 3.8547 -1.2129 3.0801 39 1 5.3458 -3.3538 0.4580 40 1 7.0072 -2.8825 0.8895 41 1 7.2531 -6.4940 0.2110 42 1 8.0885 0.9116 1.6876 43 1 11.6299 0.7615 1.0165 44 1 10.2609 1.7349 1.0489 45 1 7.9159 -3.2440 2.7562 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000171468990.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:01:31 Heat of formation + Delta-G solvation = -14.379477 kcal Electronic energy + Delta-G solvation = -27768.349704 eV Core-core repulsion = 23846.099631 eV Total energy + Delta-G solvation = -3922.250073 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.141 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -41.76492 -40.33050 -38.63028 -37.69098 -36.99655 -35.62888 -34.75715 -33.79694 -32.60242 -30.22034 -29.20243 -28.48356 -27.63724 -25.52646 -24.78543 -24.21004 -23.41850 -21.78457 -20.64282 -18.94033 -18.53316 -18.40048 -17.56065 -17.16498 -16.85496 -16.51843 -16.32145 -16.26373 -16.09700 -15.77207 -15.61942 -15.54656 -15.11648 -14.90753 -14.41914 -14.22144 -13.60056 -13.42417 -13.24657 -13.15198 -12.96088 -12.88827 -12.80030 -12.63275 -12.56481 -12.41521 -12.35046 -12.24140 -11.99349 -11.70996 -11.56078 -11.40186 -11.29664 -10.76994 -10.59566 -10.47621 -9.54383 -9.30577 -8.84773 -8.15686 -6.28566 -0.24347 0.18132 0.78087 1.45182 1.47982 1.52828 1.66589 2.09922 2.44784 2.60183 2.71309 3.04285 3.15398 3.38021 3.87071 3.95089 4.05060 4.10833 4.15193 4.23610 4.36447 4.42926 4.48257 4.52745 4.62494 4.65951 4.68389 4.75847 4.82431 4.91589 5.00821 5.02728 5.10563 5.16780 5.22433 5.32059 5.40491 5.67387 5.79493 6.06165 6.07613 6.12889 6.22259 6.37023 6.46262 6.80401 7.12251 7.16276 7.41616 8.89465 Molecular weight = 340.14amu Principal moments of inertia in cm(-1) A = 0.008949 B = 0.004284 C = 0.003093 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3127.943530 B = 6534.820752 C = 9051.494860 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 N -0.565 5.565 3 C 0.023 3.977 4 C 0.066 3.934 5 C -0.114 4.114 6 C 0.120 3.880 7 N -0.582 5.582 8 C 0.248 3.752 9 C -0.545 4.545 10 H 0.057 0.943 11 C 0.043 3.957 12 N -0.904 5.904 13 Si 0.933 3.067 14 H -0.270 1.270 15 H -0.284 1.284 16 H -0.269 1.269 17 C 0.559 3.441 18 O -0.575 6.575 19 C -0.040 4.040 20 C -0.185 4.185 21 C 0.413 3.587 22 N -0.827 5.827 23 N -0.545 5.545 24 C 0.208 3.792 25 Cl -0.031 7.031 26 C -0.178 4.178 27 H 0.029 0.971 28 H 0.078 0.922 29 H 0.071 0.929 30 H 0.059 0.941 31 H 0.080 0.920 32 H 0.027 0.973 33 H 0.082 0.918 34 H 0.038 0.962 35 H 0.054 0.946 36 H 0.059 0.941 37 H 0.084 0.916 38 H 0.074 0.926 39 H 0.021 0.979 40 H 0.033 0.967 41 H 0.267 0.733 42 H 0.161 0.839 43 H 0.413 0.587 44 H 0.425 0.575 45 H 0.164 0.836 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.239 12.192 -0.893 12.428 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 N -0.289 5.289 3 C -0.125 4.125 4 C -0.063 4.063 5 C -0.153 4.153 6 C -0.003 4.003 7 N -0.310 5.310 8 C 0.127 3.873 9 C -0.584 4.584 10 H 0.075 0.925 11 C -0.160 4.160 12 N -0.541 5.541 13 Si 0.759 3.241 14 H -0.195 1.195 15 H -0.209 1.209 16 H -0.194 1.194 17 C 0.347 3.653 18 O -0.458 6.458 19 C -0.051 4.051 20 C -0.211 4.211 21 C 0.173 3.827 22 N -0.374 5.374 23 N -0.267 5.267 24 C 0.045 3.955 25 Cl -0.003 7.003 26 C -0.202 4.202 27 H 0.048 0.952 28 H 0.097 0.903 29 H 0.090 0.910 30 H 0.078 0.922 31 H 0.099 0.901 32 H 0.046 0.954 33 H 0.101 0.899 34 H 0.057 0.943 35 H 0.073 0.927 36 H 0.078 0.922 37 H 0.102 0.898 38 H 0.092 0.908 39 H 0.039 0.961 40 H 0.051 0.949 41 H 0.077 0.923 42 H 0.179 0.821 43 H 0.244 0.756 44 H 0.258 0.742 45 H 0.181 0.819 Dipole moment (debyes) X Y Z Total from point charges -1.343 12.046 -1.274 12.188 hybrid contribution -0.558 -0.668 1.177 1.464 sum -1.901 11.378 -0.097 11.536 Atomic orbital electron populations 1.22422 0.85935 1.02844 1.01074 1.61950 1.09150 1.14502 1.43325 1.22431 1.00716 0.88427 1.00952 1.21961 0.94063 0.98787 0.91468 1.21760 0.95580 0.99764 0.98197 1.21403 0.79214 1.01056 0.98664 1.48126 1.06570 1.22835 1.53479 1.19320 0.94904 0.81436 0.91635 1.21431 1.44880 0.95344 0.96698 0.92505 1.25399 0.94283 1.00293 0.96059 1.69983 1.42591 1.25832 1.15719 0.85970 0.78865 0.79503 0.79770 1.19544 1.20923 1.19376 1.18274 0.85908 0.81768 0.79373 1.90669 1.79012 1.34835 1.41247 1.19996 0.93854 0.93662 0.97606 1.21526 0.92948 0.99978 1.06652 1.17960 0.87819 0.86624 0.90262 1.42014 1.12037 1.08585 1.74756 1.66149 1.40790 0.98732 1.21071 1.20993 0.88844 0.87907 0.97717 1.98380 1.79866 1.26980 1.95048 1.22504 0.93543 0.99942 1.04227 0.95230 0.90288 0.90976 0.92178 0.90121 0.95415 0.89934 0.94333 0.92700 0.92188 0.89780 0.90785 0.96084 0.94885 0.92343 0.82107 0.75564 0.74182 0.81934 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.45 9.57 127.69 1.22 1.68 16 2 N -0.57 -13.37 5.02 -948.85 -4.76 -18.13 16 3 C 0.02 0.48 9.32 127.69 1.19 1.68 16 4 C 0.07 1.66 4.96 86.30 0.43 2.09 16 5 C -0.11 -3.49 5.46 30.60 0.17 -3.33 16 6 C 0.12 4.18 5.46 86.38 0.47 4.65 16 7 N -0.58 -23.86 2.46 -829.21 -2.04 -25.89 16 8 C 0.25 11.49 4.67 85.63 0.40 11.89 16 9 C -0.55 -26.91 6.89 25.60 0.18 -26.74 16 10 H 0.06 2.84 7.81 -2.91 -0.02 2.82 16 11 C 0.04 2.14 5.46 84.65 0.46 2.60 16 12 N -0.90 -48.06 13.29 21.45 0.28 -47.78 16 13 Si 0.93 40.63 29.54 68.60 2.03 42.66 16 14 H -0.27 -11.49 7.11 99.48 0.71 -10.78 16 15 H -0.28 -12.27 7.11 99.48 0.71 -11.56 16 16 H -0.27 -11.55 7.11 99.48 0.71 -10.84 16 17 C 0.56 23.12 7.31 86.88 0.63 23.76 16 18 O -0.58 -24.96 16.58 -3.74 -0.06 -25.02 16 19 C -0.04 -1.57 4.98 -19.91 -0.10 -1.67 16 20 C -0.19 -5.91 9.65 22.78 0.22 -5.69 16 21 C 0.41 12.26 7.74 133.04 1.03 13.29 16 22 N -0.83 -15.55 9.07 -55.50 -0.50 -16.06 16 23 N -0.55 -19.13 10.34 -184.27 -1.91 -21.03 16 24 C 0.21 8.14 7.27 84.66 0.62 8.76 16 25 Cl -0.03 -1.18 29.10 -2.72 -0.08 -1.25 16 26 C -0.18 -7.45 7.38 22.66 0.17 -7.28 16 27 H 0.03 0.50 8.14 -2.39 -0.02 0.48 16 28 H 0.08 1.21 8.12 -2.39 -0.02 1.20 16 29 H 0.07 1.25 8.12 -2.39 -0.02 1.23 16 30 H 0.06 1.41 6.47 -2.39 -0.02 1.40 16 31 H 0.08 1.42 8.12 -2.39 -0.02 1.40 16 32 H 0.03 0.56 8.14 -2.39 -0.02 0.54 16 33 H 0.08 1.98 8.06 -2.38 -0.02 1.96 16 34 H 0.04 0.94 8.12 -2.39 -0.02 0.92 16 35 H 0.05 1.75 6.55 -2.39 -0.02 1.74 16 36 H 0.06 2.01 8.14 -2.39 -0.02 1.99 16 37 H 0.08 2.92 8.07 -2.39 -0.02 2.90 16 38 H 0.07 2.58 7.36 -2.39 -0.02 2.56 16 39 H 0.02 1.04 8.12 -2.38 -0.02 1.02 16 40 H 0.03 1.65 5.38 -2.39 -0.01 1.63 16 41 H 0.27 13.72 8.31 -92.71 -0.77 12.95 16 42 H 0.16 4.28 8.06 -2.91 -0.02 4.26 16 43 H 0.41 6.65 8.95 -92.71 -0.83 5.82 16 44 H 0.42 5.30 8.82 -92.71 -0.82 4.48 16 45 H 0.16 7.59 4.81 -2.91 -0.01 7.58 16 Total: -1.00 -60.58 386.52 -0.57 -61.15 By element: Atomic # 1 Polarization: 26.29 SS G_CDS: -0.61 Total: 25.67 kcal Atomic # 6 Polarization: 18.60 SS G_CDS: 7.09 Total: 25.68 kcal Atomic # 7 Polarization: -119.97 SS G_CDS: -8.92 Total: -128.89 kcal Atomic # 8 Polarization: -24.96 SS G_CDS: -0.06 Total: -25.02 kcal Atomic # 14 Polarization: 40.63 SS G_CDS: 2.03 Total: 42.66 kcal Atomic # 17 Polarization: -1.18 SS G_CDS: -0.08 Total: -1.25 kcal Total: -60.58 -0.57 -61.15 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000171468990.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.769 kcal (2) G-P(sol) polarization free energy of solvation -60.582 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.812 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.567 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.149 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.379 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds