Wall clock time and date at job start Sat Apr 11 2020 06:01:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86796 * 119.99966 * 2 1 4 4 H 1.48496 * 109.47557 * 89.99865 * 3 2 1 5 5 H 1.48505 * 109.46893 * 210.00034 * 3 2 1 6 6 H 1.48505 * 109.47036 * 329.99432 * 3 2 1 7 7 C 1.37881 * 120.00172 * 179.97438 * 2 1 3 8 8 H 1.08000 * 119.99844 * 359.97438 * 7 2 1 9 9 C 1.50697 * 120.00181 * 180.02562 * 7 2 1 10 10 O 1.42892 * 112.94425 * 50.33130 * 9 7 2 11 11 C 1.53950 * 113.73880 * 278.74012 * 9 7 2 12 12 N 1.47812 * 86.03437 * 222.08664 * 11 9 7 13 13 C 1.34783 * 134.45462 * 204.65029 * 12 11 9 14 14 O 1.21597 * 119.99682 * 174.48484 * 13 12 11 15 15 C 1.47507 * 119.99834 * 354.48377 * 13 12 11 16 16 C 1.39343 * 120.17937 * 335.38453 * 15 13 12 17 17 C 1.38316 * 120.46395 * 179.70179 * 16 15 13 18 18 C 1.37880 * 120.59689 * 0.62011 * 17 16 15 19 19 C 1.39581 * 120.07006 * 359.63554 * 18 17 16 20 20 C 1.45992 * 134.27401 * 180.13225 * 19 18 17 21 21 C 1.34638 * 107.28970 * 180.02562 * 20 19 18 22 22 N 1.36692 * 109.54110 * 359.96441 * 21 20 19 23 23 H 0.97000 * 124.97916 * 179.97438 * 22 21 20 24 24 C 1.37231 * 110.03360 * 359.97438 * 22 21 20 25 25 C 1.51145 * 123.64725 * 179.97438 * 21 20 19 26 26 C 1.53266 * 108.52803 * 343.16481 * 25 21 20 27 27 C 1.53140 * 109.52301 * 50.20119 * 26 25 21 28 28 C 1.50667 * 127.97901 * 0.08392 * 20 19 18 29 29 C 1.47577 * 91.05519 * 24.54839 * 12 11 9 30 30 H 0.96999 * 120.00081 * 0.02562 * 1 2 3 31 31 H 0.96706 * 114.00153 * 309.66704 * 10 9 7 32 32 H 1.08997 * 113.76735 * 336.34692 * 11 9 7 33 33 H 1.08995 * 113.76885 * 107.74688 * 11 9 7 34 34 H 1.08001 * 119.76583 * 0.02562 * 16 15 13 35 35 H 1.07999 * 119.69884 * 180.26999 * 17 16 15 36 36 H 1.08001 * 119.96842 * 179.66492 * 18 17 16 37 37 H 1.08995 * 109.63188 * 223.45246 * 25 21 20 38 38 H 1.09003 * 109.78256 * 102.96474 * 25 21 20 39 39 H 1.09000 * 109.46817 * 290.18614 * 26 25 21 40 40 H 1.09004 * 109.45850 * 170.20955 * 26 25 21 41 41 H 1.08999 * 109.50109 * 170.07302 * 27 26 25 42 42 H 1.09001 * 109.49606 * 49.96620 * 27 26 25 43 43 H 1.08999 * 109.64785 * 283.24004 * 28 20 19 44 44 H 1.09001 * 109.64461 * 43.86959 * 28 20 19 45 45 H 1.08992 * 113.77538 * 221.15493 * 29 12 11 46 46 H 1.08995 * 113.87214 * 89.76491 * 29 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4966 2.0465 1.4000 5 1 3.5467 1.4401 -0.7001 6 1 1.4466 2.6526 -0.7002 7 6 2.0046 -1.1941 0.0005 8 1 1.4646 -2.1294 0.0014 9 6 3.5115 -1.1941 0.0011 10 8 4.0682 -0.3539 1.0140 11 6 4.1318 -0.9802 -1.3916 12 7 5.0923 -2.0382 -1.0132 13 6 6.3443 -2.3575 -1.3967 14 8 6.9453 -3.2490 -0.8288 15 6 6.9854 -1.6256 -2.5054 16 6 6.2049 -0.9975 -3.4740 17 6 6.7998 -0.3044 -4.5127 18 6 8.1731 -0.2342 -4.6139 19 6 8.9775 -0.8591 -3.6597 20 6 10.4192 -0.9809 -3.4640 21 6 10.6115 -1.7139 -2.3512 22 7 9.4018 -2.0679 -1.8222 23 1 9.2798 -2.5984 -1.0193 24 6 8.3854 -1.5629 -2.5936 25 6 11.9764 -2.0670 -1.8065 26 6 13.0152 -1.8388 -2.9100 27 6 12.8260 -0.4426 -3.5101 28 6 11.5221 -0.4108 -4.3177 29 6 4.1314 -2.6025 -0.0457 30 1 -0.4850 0.8400 -0.0004 31 1 3.7022 0.5412 1.0276 32 1 3.4726 -1.2590 -2.2136 33 1 4.5871 0.0012 -1.5237 34 1 5.1280 -1.0479 -3.4103 35 1 6.1830 0.1815 -5.2542 36 1 8.6268 0.3052 -5.4322 37 1 11.9896 -3.1135 -1.5020 38 1 12.2070 -1.4335 -0.9499 39 1 12.8877 -2.5895 -3.6899 40 1 14.0170 -1.9199 -2.4881 41 1 13.6655 -0.2115 -4.1656 42 1 12.7760 0.2942 -2.7084 43 1 11.6346 -1.0114 -5.2203 44 1 11.2831 0.6182 -4.5861 45 1 4.5862 -2.9137 0.8947 46 1 3.4713 -3.3591 -0.4697 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000186824081.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:01:52 Heat of formation + Delta-G solvation = 9.268297 kcal Electronic energy + Delta-G solvation = -29497.179372 eV Core-core repulsion = 25546.094842 eV Total energy + Delta-G solvation = -3951.084530 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.157 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -41.61863 -39.81943 -37.97834 -37.14153 -35.94946 -34.48430 -32.58028 -32.27397 -30.91119 -29.24675 -28.70337 -28.23619 -25.78793 -25.47518 -24.47516 -22.49756 -21.96125 -21.71375 -20.14231 -19.14342 -18.44653 -17.52370 -17.39577 -16.99494 -16.33381 -16.04879 -15.55168 -15.14802 -15.03303 -14.74594 -14.18931 -14.06623 -14.03117 -13.67363 -13.60069 -13.49342 -13.13400 -12.93136 -12.86073 -12.64507 -12.43108 -12.28435 -12.18078 -11.79052 -11.48580 -11.42724 -11.27858 -11.06836 -10.98723 -10.91337 -10.70777 -10.63827 -10.15367 -9.81337 -9.46135 -9.35472 -9.04606 -8.71759 -8.18538 -8.06316 -7.54667 -6.44977 -4.51582 0.81408 1.66585 2.45274 2.97585 3.00866 3.08561 3.12944 3.23845 3.33299 4.00725 4.02407 4.35987 4.53676 4.59916 4.61603 4.72837 4.82203 4.92301 5.01987 5.02582 5.17085 5.21046 5.28347 5.31844 5.38405 5.45788 5.53165 5.60090 5.66518 5.71117 5.76841 5.89385 5.95487 5.98852 6.04731 6.05746 6.07792 6.18238 6.30710 6.35251 6.44603 6.55818 6.56393 6.69945 6.81516 7.15536 7.17083 7.57008 8.00093 8.20779 8.47276 8.54056 8.58900 9.12360 10.67026 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.019741 B = 0.002945 C = 0.002800 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1418.033154 B = 9506.520709 C = 9998.472506 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.875 5.875 2 C 0.081 3.919 3 Si 0.855 3.145 4 H -0.267 1.267 5 H -0.254 1.254 6 H -0.282 1.282 7 C -0.537 4.537 8 H 0.092 0.908 9 C 0.196 3.804 10 O -0.553 6.553 11 C 0.060 3.940 12 N -0.625 5.625 13 C 0.576 3.424 14 O -0.570 6.570 15 C -0.135 4.135 16 C -0.064 4.064 17 C -0.156 4.156 18 C -0.051 4.051 19 C -0.110 4.110 20 C -0.172 4.172 21 C 0.075 3.925 22 N -0.574 5.574 23 H 0.423 0.577 24 C 0.149 3.851 25 C -0.057 4.057 26 C -0.113 4.113 27 C -0.120 4.120 28 C -0.042 4.042 29 C 0.128 3.872 30 H 0.271 0.729 31 H 0.353 0.647 32 H 0.097 0.903 33 H 0.073 0.927 34 H 0.136 0.864 35 H 0.128 0.872 36 H 0.123 0.877 37 H 0.077 0.923 38 H 0.081 0.919 39 H 0.068 0.932 40 H 0.070 0.930 41 H 0.067 0.933 42 H 0.065 0.935 43 H 0.069 0.931 44 H 0.070 0.930 45 H 0.076 0.924 46 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 21.411 1.007 -9.624 23.497 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.510 5.510 2 C -0.125 4.125 3 Si 0.683 3.317 4 H -0.193 1.193 5 H -0.180 1.180 6 H -0.208 1.208 7 C -0.574 4.574 8 H 0.110 0.890 9 C 0.155 3.845 10 O -0.364 6.364 11 C -0.063 4.063 12 N -0.357 5.357 13 C 0.367 3.633 14 O -0.452 6.452 15 C -0.141 4.141 16 C -0.083 4.083 17 C -0.175 4.175 18 C -0.070 4.070 19 C -0.115 4.115 20 C -0.179 4.179 21 C -0.034 4.034 22 N -0.175 5.175 23 H 0.262 0.738 24 C 0.039 3.961 25 C -0.095 4.095 26 C -0.151 4.151 27 C -0.158 4.158 28 C -0.079 4.079 29 C 0.006 3.994 30 H 0.081 0.919 31 H 0.204 0.796 32 H 0.115 0.885 33 H 0.092 0.908 34 H 0.153 0.847 35 H 0.146 0.854 36 H 0.141 0.859 37 H 0.096 0.904 38 H 0.100 0.900 39 H 0.087 0.913 40 H 0.089 0.911 41 H 0.085 0.915 42 H 0.084 0.916 43 H 0.087 0.913 44 H 0.088 0.912 45 H 0.095 0.905 46 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges 22.072 -0.011 -9.121 23.882 hybrid contribution -0.343 1.185 0.252 1.259 sum 21.728 1.174 -8.869 23.498 Atomic orbital electron populations 1.69853 1.06065 1.27661 1.47468 1.24998 0.94906 0.98983 0.93565 0.87383 0.80597 0.84394 0.79277 1.19336 1.17959 1.20835 1.21215 0.87558 0.95721 1.52944 0.89035 1.20556 0.92624 0.87892 0.83453 1.86468 1.67585 1.25609 1.56731 1.24789 0.88484 0.90491 1.02498 1.50034 1.12013 1.32333 1.41349 1.17832 0.80625 0.82450 0.82380 1.90664 1.63756 1.33427 1.57330 1.18940 0.89879 1.06149 0.99119 1.21330 1.00032 0.94091 0.92877 1.20798 0.94375 1.02629 0.99713 1.20596 0.92828 0.96759 0.96794 1.18844 0.92594 1.03224 0.96805 1.19913 0.91762 1.07074 0.99137 1.20340 0.86787 1.00429 0.95807 1.41628 1.03514 1.46754 1.25609 0.73845 1.17914 0.88214 0.97466 0.92547 1.20374 0.88401 1.02021 0.98687 1.21524 0.97845 0.97938 0.97747 1.21627 0.97288 0.97015 0.99824 1.19964 0.91137 1.00245 0.96592 1.23309 0.87228 0.97123 0.91731 0.91857 0.79571 0.88477 0.90825 0.84656 0.85369 0.85883 0.90422 0.90042 0.91324 0.91086 0.91450 0.91637 0.91290 0.91165 0.90548 0.88537 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -24.16 13.96 55.43 0.77 -23.39 16 2 C 0.08 2.09 5.47 -17.82 -0.10 2.00 16 3 Si 0.86 18.63 24.31 -169.99 -4.13 14.50 16 4 H -0.27 -5.72 7.05 56.52 0.40 -5.33 16 5 H -0.25 -5.19 5.16 56.52 0.29 -4.90 16 6 H -0.28 -6.14 7.11 56.52 0.40 -5.74 16 7 C -0.54 -13.62 9.19 -34.44 -0.32 -13.94 16 8 H 0.09 2.48 8.06 -52.49 -0.42 2.06 16 9 C 0.20 4.42 1.06 -90.84 -0.10 4.32 16 10 O -0.55 -13.05 13.35 -35.23 -0.47 -13.52 16 11 C 0.06 1.19 4.76 -2.84 -0.01 1.18 16 12 N -0.63 -12.73 3.58 -179.36 -0.64 -13.38 16 13 C 0.58 11.75 7.82 -12.48 -0.10 11.66 16 14 O -0.57 -12.61 16.36 5.28 0.09 -12.52 16 15 C -0.14 -2.42 5.83 -104.89 -0.61 -3.03 16 16 C -0.06 -0.99 8.81 -39.14 -0.34 -1.33 16 17 C -0.16 -2.03 10.00 -39.68 -0.40 -2.43 16 18 C -0.05 -0.65 10.08 -39.21 -0.40 -1.05 16 19 C -0.11 -1.61 6.37 -105.32 -0.67 -2.29 16 20 C -0.17 -2.17 6.12 -102.81 -0.63 -2.79 16 21 C 0.07 0.94 7.01 -81.48 -0.57 0.37 16 22 N -0.57 -8.66 5.89 -6.52 -0.04 -8.69 16 23 H 0.42 6.37 7.90 -40.82 -0.32 6.05 16 24 C 0.15 2.50 6.86 -83.66 -0.57 1.93 16 25 C -0.06 -0.50 6.30 -27.53 -0.17 -0.67 16 26 C -0.11 -0.79 5.89 -26.52 -0.16 -0.95 16 27 C -0.12 -0.87 5.93 -26.45 -0.16 -1.03 16 28 C -0.04 -0.38 6.29 -27.69 -0.17 -0.55 16 29 C 0.13 2.65 8.23 -2.97 -0.02 2.63 16 30 H 0.27 6.99 8.31 -40.82 -0.34 6.65 16 31 H 0.35 7.91 3.57 45.56 0.16 8.07 16 32 H 0.10 1.78 7.70 -51.93 -0.40 1.38 16 33 H 0.07 1.43 6.55 -51.93 -0.34 1.09 16 34 H 0.14 2.02 5.50 -52.49 -0.29 1.73 16 35 H 0.13 1.31 8.06 -52.49 -0.42 0.89 16 36 H 0.12 1.21 8.06 -52.49 -0.42 0.78 16 37 H 0.08 0.61 8.14 -51.93 -0.42 0.19 16 38 H 0.08 0.64 8.14 -51.93 -0.42 0.22 16 39 H 0.07 0.50 8.11 -51.93 -0.42 0.08 16 40 H 0.07 0.38 8.14 -51.93 -0.42 -0.05 16 41 H 0.07 0.38 8.14 -51.93 -0.42 -0.04 16 42 H 0.06 0.50 8.12 -51.93 -0.42 0.08 16 43 H 0.07 0.58 8.14 -51.93 -0.42 0.15 16 44 H 0.07 0.60 8.14 -51.93 -0.42 0.17 16 45 H 0.08 1.60 8.14 -51.93 -0.42 1.18 16 46 H 0.10 1.85 8.09 -51.93 -0.42 1.43 16 LS Contribution 363.79 15.07 5.48 5.48 Total: -1.00 -30.97 363.79 -10.37 -41.34 By element: Atomic # 1 Polarization: 22.08 SS G_CDS: -5.93 Total: 16.15 kcal Atomic # 6 Polarization: -0.47 SS G_CDS: -5.50 Total: -5.97 kcal Atomic # 7 Polarization: -45.55 SS G_CDS: 0.09 Total: -45.46 kcal Atomic # 8 Polarization: -25.66 SS G_CDS: -0.38 Total: -26.05 kcal Atomic # 14 Polarization: 18.63 SS G_CDS: -4.13 Total: 14.50 kcal Total LS contribution 5.48 Total: 5.48 kcal Total: -30.97 -10.37 -41.34 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000186824081.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.607 kcal (2) G-P(sol) polarization free energy of solvation -30.971 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 19.635 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.367 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.338 kcal (6) G-S(sol) free energy of system = (1) + (5) 9.268 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds