Wall clock time and date at job start Sat Apr 11 2020 06:01:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86796 * 119.99966 * 2 1 4 4 H 1.48496 * 109.47557 * 89.99865 * 3 2 1 5 5 H 1.48505 * 109.46893 * 210.00034 * 3 2 1 6 6 H 1.48505 * 109.47036 * 329.99432 * 3 2 1 7 7 C 1.37881 * 120.00172 * 179.97438 * 2 1 3 8 8 H 1.08000 * 119.99844 * 359.97438 * 7 2 1 9 9 C 1.50697 * 120.00181 * 180.02562 * 7 2 1 10 10 O 1.42892 * 112.94425 * 50.33130 * 9 7 2 11 11 C 1.53950 * 113.73880 * 278.74012 * 9 7 2 12 12 N 1.47812 * 86.03437 * 222.08664 * 11 9 7 13 13 C 1.34783 * 134.45462 * 204.65029 * 12 11 9 14 14 O 1.21597 * 119.99682 * 174.48484 * 13 12 11 15 15 C 1.47507 * 119.99834 * 354.48377 * 13 12 11 16 16 C 1.39343 * 120.17937 * 335.38453 * 15 13 12 17 17 C 1.38316 * 120.46395 * 179.70179 * 16 15 13 18 18 C 1.37880 * 120.59689 * 0.62011 * 17 16 15 19 19 C 1.39581 * 120.07006 * 359.63554 * 18 17 16 20 20 C 1.45992 * 134.27401 * 180.13225 * 19 18 17 21 21 C 1.34638 * 107.28970 * 180.02562 * 20 19 18 22 22 N 1.36692 * 109.54110 * 359.96441 * 21 20 19 23 23 H 0.97000 * 124.97916 * 179.97438 * 22 21 20 24 24 C 1.37231 * 110.03360 * 359.97438 * 22 21 20 25 25 C 1.51145 * 123.64725 * 179.97438 * 21 20 19 26 26 C 1.53266 * 108.52803 * 343.16481 * 25 21 20 27 27 C 1.53140 * 109.52301 * 50.20119 * 26 25 21 28 28 C 1.50667 * 127.97901 * 0.08392 * 20 19 18 29 29 C 1.47577 * 91.05519 * 24.54839 * 12 11 9 30 30 H 0.96999 * 120.00081 * 0.02562 * 1 2 3 31 31 H 0.96706 * 114.00153 * 309.66704 * 10 9 7 32 32 H 1.08997 * 113.76735 * 336.34692 * 11 9 7 33 33 H 1.08995 * 113.76885 * 107.74688 * 11 9 7 34 34 H 1.08001 * 119.76583 * 0.02562 * 16 15 13 35 35 H 1.07999 * 119.69884 * 180.26999 * 17 16 15 36 36 H 1.08001 * 119.96842 * 179.66492 * 18 17 16 37 37 H 1.08995 * 109.63188 * 223.45246 * 25 21 20 38 38 H 1.09003 * 109.78256 * 102.96474 * 25 21 20 39 39 H 1.09000 * 109.46817 * 290.18614 * 26 25 21 40 40 H 1.09004 * 109.45850 * 170.20955 * 26 25 21 41 41 H 1.08999 * 109.50109 * 170.07302 * 27 26 25 42 42 H 1.09001 * 109.49606 * 49.96620 * 27 26 25 43 43 H 1.08999 * 109.64785 * 283.24004 * 28 20 19 44 44 H 1.09001 * 109.64461 * 43.86959 * 28 20 19 45 45 H 1.08992 * 113.77538 * 221.15493 * 29 12 11 46 46 H 1.08995 * 113.87214 * 89.76491 * 29 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4966 2.0465 1.4000 5 1 3.5467 1.4401 -0.7001 6 1 1.4466 2.6526 -0.7002 7 6 2.0046 -1.1941 0.0005 8 1 1.4646 -2.1294 0.0014 9 6 3.5115 -1.1941 0.0011 10 8 4.0682 -0.3539 1.0140 11 6 4.1318 -0.9802 -1.3916 12 7 5.0923 -2.0382 -1.0132 13 6 6.3443 -2.3575 -1.3967 14 8 6.9453 -3.2490 -0.8288 15 6 6.9854 -1.6256 -2.5054 16 6 6.2049 -0.9975 -3.4740 17 6 6.7998 -0.3044 -4.5127 18 6 8.1731 -0.2342 -4.6139 19 6 8.9775 -0.8591 -3.6597 20 6 10.4192 -0.9809 -3.4640 21 6 10.6115 -1.7139 -2.3512 22 7 9.4018 -2.0679 -1.8222 23 1 9.2798 -2.5984 -1.0193 24 6 8.3854 -1.5629 -2.5936 25 6 11.9764 -2.0670 -1.8065 26 6 13.0152 -1.8388 -2.9100 27 6 12.8260 -0.4426 -3.5101 28 6 11.5221 -0.4108 -4.3177 29 6 4.1314 -2.6025 -0.0457 30 1 -0.4850 0.8400 -0.0004 31 1 3.7022 0.5412 1.0276 32 1 3.4726 -1.2590 -2.2136 33 1 4.5871 0.0012 -1.5237 34 1 5.1280 -1.0479 -3.4103 35 1 6.1830 0.1815 -5.2542 36 1 8.6268 0.3052 -5.4322 37 1 11.9896 -3.1135 -1.5020 38 1 12.2070 -1.4335 -0.9499 39 1 12.8877 -2.5895 -3.6899 40 1 14.0170 -1.9199 -2.4881 41 1 13.6655 -0.2115 -4.1656 42 1 12.7760 0.2942 -2.7084 43 1 11.6346 -1.0114 -5.2203 44 1 11.2831 0.6182 -4.5861 45 1 4.5862 -2.9137 0.8947 46 1 3.4713 -3.3591 -0.4697 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000186824081.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:01:51 Heat of formation + Delta-G solvation = -11.124903 kcal Electronic energy + Delta-G solvation = -29498.063688 eV Core-core repulsion = 25546.094842 eV Total energy + Delta-G solvation = -3951.968845 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.157 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -42.65980 -41.40850 -39.40135 -38.32094 -36.82831 -36.24120 -34.57108 -33.29703 -31.89281 -30.62122 -29.65607 -29.42388 -27.45751 -27.20511 -25.42778 -23.57201 -22.82789 -22.76566 -21.71139 -20.49444 -19.53226 -19.29930 -18.63170 -18.31260 -18.04423 -17.31323 -16.73274 -16.57472 -16.12763 -15.94892 -15.52853 -15.34483 -15.07836 -15.00872 -14.78340 -14.68022 -14.53282 -14.21356 -14.08061 -13.92123 -13.68980 -13.60465 -13.07801 -13.03249 -12.88352 -12.68110 -12.48623 -12.45295 -12.36511 -11.95207 -11.66023 -11.61381 -11.45779 -11.34726 -11.13050 -10.92134 -10.56168 -10.49198 -9.76772 -9.20940 -8.56242 -8.44001 -6.56666 -0.32361 0.57606 1.24735 1.27483 1.38270 1.39016 1.75706 1.90203 2.09448 2.16407 2.74643 2.86175 3.15550 3.40973 3.56281 3.76273 3.82265 3.89464 4.04161 4.08503 4.15861 4.24828 4.29084 4.35112 4.35960 4.41382 4.56859 4.59953 4.60547 4.66505 4.69726 4.76830 4.84919 4.86416 4.92391 4.99447 5.08415 5.20384 5.23754 5.25940 5.28589 5.38909 5.50546 5.51186 5.71763 5.86490 6.02627 6.11918 6.47742 6.51418 6.61355 6.68160 6.95947 7.11671 8.71126 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.019741 B = 0.002945 C = 0.002800 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1418.033154 B = 9506.520709 C = 9998.472506 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.921 5.921 2 C 0.032 3.968 3 Si 0.913 3.087 4 H -0.260 1.260 5 H -0.231 1.231 6 H -0.278 1.278 7 C -0.542 4.542 8 H 0.059 0.941 9 C 0.186 3.814 10 O -0.563 6.563 11 C 0.076 3.924 12 N -0.628 5.628 13 C 0.571 3.429 14 O -0.598 6.598 15 C -0.169 4.169 16 C -0.067 4.067 17 C -0.155 4.155 18 C -0.038 4.038 19 C -0.126 4.126 20 C -0.176 4.176 21 C 0.063 3.937 22 N -0.585 5.585 23 H 0.416 0.584 24 C 0.120 3.880 25 C -0.057 4.057 26 C -0.109 4.109 27 C -0.118 4.118 28 C -0.041 4.041 29 C 0.125 3.875 30 H 0.274 0.726 31 H 0.357 0.643 32 H 0.112 0.888 33 H 0.084 0.916 34 H 0.137 0.863 35 H 0.162 0.838 36 H 0.160 0.840 37 H 0.082 0.918 38 H 0.089 0.911 39 H 0.066 0.934 40 H 0.093 0.907 41 H 0.089 0.911 42 H 0.061 0.939 43 H 0.078 0.922 44 H 0.079 0.921 45 H 0.069 0.931 46 H 0.107 0.893 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 24.426 3.072 -11.871 27.331 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.558 5.558 2 C -0.170 4.170 3 Si 0.738 3.262 4 H -0.186 1.186 5 H -0.155 1.155 6 H -0.204 1.204 7 C -0.580 4.580 8 H 0.077 0.923 9 C 0.145 3.855 10 O -0.374 6.374 11 C -0.046 4.046 12 N -0.359 5.359 13 C 0.364 3.636 14 O -0.482 6.482 15 C -0.175 4.175 16 C -0.086 4.086 17 C -0.174 4.174 18 C -0.056 4.056 19 C -0.131 4.131 20 C -0.183 4.183 21 C -0.044 4.044 22 N -0.186 5.186 23 H 0.254 0.746 24 C 0.009 3.991 25 C -0.095 4.095 26 C -0.147 4.147 27 C -0.155 4.155 28 C -0.079 4.079 29 C 0.003 3.997 30 H 0.084 0.916 31 H 0.209 0.791 32 H 0.130 0.870 33 H 0.102 0.898 34 H 0.155 0.845 35 H 0.180 0.820 36 H 0.177 0.823 37 H 0.100 0.900 38 H 0.108 0.892 39 H 0.085 0.915 40 H 0.111 0.889 41 H 0.108 0.892 42 H 0.080 0.920 43 H 0.097 0.903 44 H 0.097 0.903 45 H 0.087 0.913 46 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges 25.111 2.055 -11.384 27.647 hybrid contribution -1.274 0.454 0.954 1.656 sum 23.836 2.509 -10.429 26.139 Atomic orbital electron populations 1.69984 1.07898 1.28847 1.49052 1.25769 0.95580 1.02674 0.92962 0.86412 0.80232 0.79639 0.79920 1.18580 1.15522 1.20376 1.21292 0.89160 0.94717 1.52835 0.92304 1.20601 0.91061 0.88920 0.84872 1.86464 1.67517 1.26045 1.57407 1.24628 0.88129 0.90984 1.00856 1.49997 1.12217 1.32428 1.41297 1.18368 0.80170 0.82285 0.82747 1.90627 1.64253 1.34750 1.58593 1.18880 0.90697 1.08430 0.99457 1.21489 1.00041 0.94002 0.93107 1.21165 0.94979 1.01874 0.99402 1.21061 0.92709 0.95211 0.96665 1.19312 0.93857 1.03216 0.96670 1.20400 0.91765 1.06695 0.99417 1.21053 0.87267 1.00144 0.95959 1.41817 1.04331 1.46937 1.25526 0.74625 1.18226 0.88244 0.98688 0.93944 1.20547 0.86867 1.02460 0.99644 1.21548 0.98205 0.97851 0.97091 1.21636 0.97051 0.96906 0.99903 1.20092 0.90691 1.00564 0.96528 1.23302 0.87644 0.96713 0.92037 0.91622 0.79085 0.86975 0.89794 0.84542 0.81998 0.82274 0.89968 0.89226 0.91512 0.88866 0.89215 0.92017 0.90320 0.90294 0.91276 0.87502 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -51.89 13.96 21.45 0.30 -51.59 16 2 C 0.03 1.65 5.47 84.66 0.46 2.12 16 3 Si 0.91 37.72 24.31 68.60 1.67 39.39 16 4 H -0.26 -10.43 7.05 99.48 0.70 -9.73 16 5 H -0.23 -8.61 5.16 99.48 0.51 -8.10 16 6 H -0.28 -11.27 7.11 99.48 0.71 -10.56 16 7 C -0.54 -28.12 9.19 25.60 0.24 -27.88 16 8 H 0.06 3.35 8.06 -2.91 -0.02 3.33 16 9 C 0.19 8.41 1.06 -10.88 -0.01 8.40 16 10 O -0.56 -26.24 13.35 -148.98 -1.99 -28.23 16 11 C 0.08 2.96 4.76 86.44 0.41 3.37 16 12 N -0.63 -25.71 3.58 -843.46 -3.02 -28.73 16 13 C 0.57 23.76 7.82 86.69 0.68 24.44 16 14 O -0.60 -27.46 16.36 -4.02 -0.07 -27.53 16 15 C -0.17 -6.03 5.83 -20.04 -0.12 -6.15 16 16 C -0.07 -1.98 8.81 22.55 0.20 -1.78 16 17 C -0.16 -3.56 10.00 22.20 0.22 -3.34 16 18 C -0.04 -0.85 10.08 22.51 0.23 -0.62 16 19 C -0.13 -3.47 6.37 -20.32 -0.13 -3.60 16 20 C -0.18 -4.10 6.12 -18.69 -0.11 -4.21 16 21 C 0.06 1.53 7.01 41.12 0.29 1.81 16 22 N -0.58 -17.91 5.89 -174.54 -1.03 -18.94 16 23 H 0.42 13.16 7.90 -92.71 -0.73 12.43 16 24 C 0.12 4.01 6.86 39.46 0.27 4.28 16 25 C -0.06 -0.91 6.30 30.08 0.19 -0.72 16 26 C -0.11 -1.21 5.89 30.73 0.18 -1.03 16 27 C -0.12 -1.30 5.93 30.78 0.18 -1.12 16 28 C -0.04 -0.62 6.29 29.97 0.19 -0.43 16 29 C 0.13 5.32 8.23 86.49 0.71 6.03 16 30 H 0.27 14.38 8.31 -92.71 -0.77 13.61 16 31 H 0.36 15.47 3.57 -74.05 -0.26 15.21 16 32 H 0.11 3.99 7.70 -2.39 -0.02 3.97 16 33 H 0.08 3.09 6.55 -2.39 -0.02 3.07 16 34 H 0.14 3.87 5.50 -2.91 -0.02 3.85 16 35 H 0.16 2.57 8.06 -2.91 -0.02 2.55 16 36 H 0.16 2.34 8.06 -2.91 -0.02 2.31 16 37 H 0.08 1.21 8.14 -2.39 -0.02 1.19 16 38 H 0.09 1.27 8.14 -2.39 -0.02 1.25 16 39 H 0.07 0.78 8.11 -2.39 -0.02 0.77 16 40 H 0.09 0.65 8.14 -2.38 -0.02 0.63 16 41 H 0.09 0.63 8.14 -2.39 -0.02 0.61 16 42 H 0.06 0.75 8.12 -2.39 -0.02 0.73 16 43 H 0.08 1.04 8.14 -2.39 -0.02 1.02 16 44 H 0.08 1.05 8.14 -2.39 -0.02 1.03 16 45 H 0.07 3.00 8.14 -2.39 -0.02 2.98 16 46 H 0.11 4.24 8.09 -2.39 -0.02 4.22 16 Total: -1.00 -69.47 363.79 -0.22 -69.68 By element: Atomic # 1 Polarization: 46.52 SS G_CDS: -0.16 Total: 46.36 kcal Atomic # 6 Polarization: -4.49 SS G_CDS: 4.08 Total: -0.41 kcal Atomic # 7 Polarization: -95.51 SS G_CDS: -3.75 Total: -99.26 kcal Atomic # 8 Polarization: -53.71 SS G_CDS: -2.05 Total: -55.76 kcal Atomic # 14 Polarization: 37.72 SS G_CDS: 1.67 Total: 39.39 kcal Total: -69.47 -0.22 -69.68 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000186824081.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 58.559 kcal (2) G-P(sol) polarization free energy of solvation -69.466 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.907 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.218 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.684 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.125 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds