Wall clock time and date at job start Sat Apr 11 2020 06:01:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86798 * 120.00046 * 2 1 4 4 H 1.48502 * 109.47262 * 274.99937 * 3 2 1 5 5 H 1.48503 * 109.46950 * 34.99808 * 3 2 1 6 6 H 1.48497 * 109.47353 * 154.99658 * 3 2 1 7 7 C 1.37875 * 120.00143 * 179.97438 * 2 1 3 8 8 H 1.07995 * 120.00552 * 185.24665 * 7 2 1 9 9 C 1.50706 * 119.99817 * 5.24127 * 7 2 1 10 10 O 1.42897 * 113.27901 * 52.33346 * 9 7 2 11 11 C 1.53492 * 114.20614 * 185.39653 * 9 7 2 12 12 N 1.47069 * 87.98683 * 139.65860 * 11 9 7 13 13 C 1.34771 * 136.05941 * 152.84245 * 12 11 9 14 14 O 1.21579 * 120.00020 * 2.78744 * 13 12 11 15 15 C 1.47652 * 120.00326 * 182.78341 * 13 12 11 16 16 C 1.39903 * 119.21861 * 171.93738 * 15 13 12 17 17 C 1.36980 * 122.28279 * 179.97438 * 16 15 13 18 18 C 1.39593 * 117.35040 * 359.97438 * 17 16 15 19 19 N 1.36224 * 131.84306 * 180.02562 * 18 17 16 20 20 H 0.96998 * 125.05020 * 359.96529 * 19 18 17 21 21 C 1.37078 * 109.90162 * 179.97438 * 19 18 17 22 22 C 1.35001 * 109.79644 * 0.03265 * 21 19 18 23 23 C 1.42064 * 120.89594 * 0.02562 * 18 17 16 24 24 C 1.39464 * 121.33735 * 0.02986 * 23 18 17 25 25 C 1.50747 * 124.44322 * 179.84520 * 22 21 19 26 26 C 1.53317 * 108.56165 * 343.56086 * 25 22 21 27 27 C 1.53134 * 109.30083 * 49.69910 * 26 25 22 28 28 C 1.51075 * 126.49475 * 180.02562 * 21 19 18 29 29 C 1.47064 * 87.88061 * 333.10223 * 12 11 9 30 30 H 0.96998 * 120.00245 * 0.02562 * 1 2 3 31 31 H 0.96700 * 114.00172 * 307.99035 * 10 9 7 32 32 H 1.09005 * 113.46935 * 24.87490 * 11 9 7 33 33 H 1.09000 * 113.46912 * 254.43730 * 11 9 7 34 34 H 1.07997 * 118.86239 * 359.97438 * 16 15 13 35 35 H 1.07996 * 121.32374 * 180.02562 * 17 16 15 36 36 H 1.08002 * 121.71602 * 180.02562 * 24 23 18 37 37 H 1.09005 * 109.61923 * 103.25746 * 25 22 21 38 38 H 1.08992 * 109.62765 * 223.81311 * 25 22 21 39 39 H 1.08997 * 109.49001 * 289.75541 * 26 25 22 40 40 H 1.09007 * 109.50554 * 169.64642 * 26 25 22 41 41 H 1.09003 * 109.47538 * 169.97121 * 27 26 25 42 42 H 1.08999 * 109.47582 * 49.95386 * 27 26 25 43 43 H 1.09003 * 109.61334 * 43.48192 * 28 21 19 44 44 H 1.09004 * 109.75727 * 283.04463 * 28 21 19 45 45 H 1.09001 * 113.46936 * 141.68220 * 29 12 11 46 46 H 1.09001 * 113.46853 * 272.11315 * 29 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.3910 2.1074 -1.3948 5 1 1.5034 2.6198 0.8030 6 1 3.5955 1.4120 0.5917 7 6 2.0046 -1.1940 0.0005 8 1 3.0811 -1.1960 0.0861 9 6 1.2558 -2.4965 -0.1181 10 8 0.3642 -2.5357 -1.2341 11 6 2.1371 -3.7447 0.0274 12 7 1.0557 -4.3527 0.8173 13 6 0.6290 -5.6045 1.0763 14 8 1.2362 -6.5584 0.6297 15 6 -0.5760 -5.8176 1.9025 16 6 -1.1030 -7.1081 2.0215 17 6 -2.2172 -7.3771 2.7716 18 6 -2.8232 -6.3041 3.4274 19 7 -3.9190 -6.2335 4.2337 20 1 -4.4765 -6.9871 4.4831 21 6 -4.1167 -4.9394 4.6400 22 6 -3.1629 -4.1435 4.1116 23 6 -2.2976 -4.9891 3.3143 24 6 -1.1633 -4.7249 2.5473 25 6 -3.0692 -2.6566 4.3421 26 6 -4.4112 -2.1630 4.8950 27 6 -4.8340 -3.0531 6.0672 28 6 -5.2216 -4.4394 5.5409 29 6 0.6410 -2.9931 1.1947 30 1 -0.4850 0.8400 -0.0004 31 1 -0.2430 -1.7844 -1.2791 32 1 3.0474 -3.5689 0.6007 33 1 2.3252 -4.2558 -0.9168 34 1 -0.6145 -7.9205 1.5041 35 1 -2.6106 -8.3795 2.8530 36 1 -0.7583 -3.7277 2.4574 37 1 -2.2778 -2.4470 5.0617 38 1 -2.8536 -2.1530 3.3998 39 1 -5.1671 -2.2103 4.1111 40 1 -4.3068 -1.1338 5.2389 41 1 -5.6885 -2.6049 6.5741 42 1 -4.0048 -3.1490 6.7681 43 1 -5.3499 -5.1257 6.3780 44 1 -6.1527 -4.3701 4.9785 45 1 -0.4406 -2.8664 1.2411 46 1 1.1486 -2.6151 2.0821 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000186836793.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:01:55 Heat of formation + Delta-G solvation = 5.358898 kcal Electronic energy + Delta-G solvation = -29596.608580 eV Core-core repulsion = 25645.354525 eV Total energy + Delta-G solvation = -3951.254054 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.157 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -41.54655 -39.68923 -37.81688 -36.93129 -35.57971 -33.99348 -32.26558 -32.23775 -30.91054 -29.28668 -28.41750 -27.99074 -25.43895 -25.22204 -24.31792 -22.67218 -21.96355 -21.07306 -20.10808 -18.87516 -18.29464 -17.64547 -17.42354 -16.64149 -15.93214 -15.51831 -15.23030 -14.85785 -14.70504 -14.46146 -14.17938 -13.99292 -13.92751 -13.76858 -13.36223 -13.22112 -12.82719 -12.70847 -12.65296 -12.48388 -12.23070 -12.04973 -11.89417 -11.61223 -11.24621 -11.14287 -11.04588 -10.92248 -10.88463 -10.69651 -10.53105 -10.41921 -10.23070 -9.53531 -9.46334 -9.13891 -8.78829 -8.32714 -8.04605 -7.73643 -7.47555 -6.37289 -4.46443 1.13235 1.44859 2.66232 3.03157 3.16667 3.25243 3.27805 3.40556 3.63939 4.20942 4.27869 4.44941 4.62695 4.70860 4.84250 4.87230 4.94314 5.02105 5.13167 5.27612 5.32398 5.39941 5.44892 5.51578 5.54908 5.57287 5.70505 5.82162 5.85022 5.92698 5.95811 6.02691 6.14114 6.18567 6.24187 6.28727 6.41193 6.50104 6.54422 6.59732 6.68245 6.79721 6.81995 6.87506 7.09900 7.21279 7.49523 7.64384 7.85127 8.55180 8.58327 8.87063 9.24409 9.34286 10.69901 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.010207 B = 0.003909 C = 0.002932 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2742.429365 B = 7161.910624 C = 9549.038258 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.894 5.894 2 C 0.075 3.925 3 Si 0.904 3.096 4 H -0.278 1.278 5 H -0.284 1.284 6 H -0.271 1.271 7 C -0.536 4.536 8 H 0.072 0.928 9 C 0.240 3.760 10 O -0.567 6.567 11 C 0.110 3.890 12 N -0.631 5.631 13 C 0.580 3.420 14 O -0.568 6.568 15 C -0.154 4.154 16 C -0.045 4.045 17 C -0.148 4.148 18 C 0.117 3.883 19 N -0.585 5.585 20 H 0.412 0.588 21 C 0.053 3.947 22 C -0.146 4.146 23 C -0.115 4.115 24 C -0.034 4.034 25 C -0.051 4.051 26 C -0.119 4.119 27 C -0.114 4.114 28 C -0.052 4.052 29 C 0.068 3.932 30 H 0.271 0.729 31 H 0.388 0.612 32 H 0.086 0.914 33 H 0.066 0.934 34 H 0.132 0.868 35 H 0.129 0.871 36 H 0.156 0.844 37 H 0.072 0.928 38 H 0.080 0.920 39 H 0.065 0.935 40 H 0.069 0.931 41 H 0.069 0.931 42 H 0.068 0.932 43 H 0.072 0.928 44 H 0.078 0.922 45 H 0.075 0.925 46 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.049 -5.959 12.725 18.510 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.533 5.533 2 C -0.129 4.129 3 Si 0.731 3.269 4 H -0.203 1.203 5 H -0.210 1.210 6 H -0.196 1.196 7 C -0.574 4.574 8 H 0.090 0.910 9 C 0.198 3.802 10 O -0.376 6.376 11 C -0.012 4.012 12 N -0.363 5.363 13 C 0.371 3.629 14 O -0.450 6.450 15 C -0.158 4.158 16 C -0.065 4.065 17 C -0.169 4.169 18 C 0.007 3.993 19 N -0.187 5.187 20 H 0.248 0.752 21 C -0.053 4.053 22 C -0.153 4.153 23 C -0.120 4.120 24 C -0.052 4.052 25 C -0.089 4.089 26 C -0.157 4.157 27 C -0.151 4.151 28 C -0.090 4.090 29 C -0.055 4.055 30 H 0.081 0.919 31 H 0.240 0.760 32 H 0.104 0.896 33 H 0.085 0.915 34 H 0.150 0.850 35 H 0.147 0.853 36 H 0.173 0.827 37 H 0.091 0.909 38 H 0.098 0.902 39 H 0.084 0.916 40 H 0.088 0.912 41 H 0.088 0.912 42 H 0.086 0.914 43 H 0.091 0.909 44 H 0.097 0.903 45 H 0.093 0.907 46 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges -11.739 -7.159 12.469 18.562 hybrid contribution -0.245 0.844 0.303 0.929 sum -11.984 -6.315 12.772 18.618 Atomic orbital electron populations 1.69616 1.06050 1.28041 1.49561 1.25044 0.95015 0.99704 0.93094 0.86378 0.79926 0.82263 0.78309 1.20350 1.20982 1.19552 1.21392 0.94281 0.89839 1.51874 0.90976 1.19512 0.86799 0.91198 0.82676 1.86091 1.52651 1.51399 1.47497 1.23279 0.91466 0.91991 0.94488 1.49582 1.32714 1.04688 1.49318 1.17729 0.84064 0.81085 0.79995 1.90684 1.59105 1.40319 1.54877 1.19724 0.98525 0.94068 1.03449 1.20574 0.94006 0.95980 0.95927 1.19969 0.98303 0.96472 1.02181 1.18551 0.89438 0.95661 0.95613 1.41300 1.25487 1.08618 1.43249 0.75156 1.20421 0.99824 0.83081 1.02022 1.19986 0.97085 0.95319 1.02884 1.18871 0.98265 0.91945 1.02889 1.22028 0.92078 0.99474 0.91636 1.20072 0.97306 0.89736 1.01774 1.21600 0.97430 0.98975 0.97655 1.21534 1.01551 0.93832 0.98232 1.20306 0.94813 0.97226 0.96697 1.24280 1.00709 0.77817 1.02662 0.91866 0.75969 0.89561 0.91513 0.85037 0.85328 0.82710 0.90919 0.90188 0.91641 0.91227 0.91199 0.91361 0.90911 0.90347 0.90727 0.89777 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -22.04 11.54 55.43 0.64 -21.40 16 2 C 0.07 1.82 5.35 -17.82 -0.10 1.73 16 3 Si 0.90 19.18 29.54 -169.99 -5.02 14.16 16 4 H -0.28 -5.96 7.11 56.52 0.40 -5.56 16 5 H -0.28 -5.99 7.11 56.52 0.40 -5.59 16 6 H -0.27 -5.71 7.11 56.52 0.40 -5.31 16 7 C -0.54 -13.25 8.66 -34.44 -0.30 -13.55 16 8 H 0.07 1.75 7.82 -52.49 -0.41 1.34 16 9 C 0.24 5.71 1.42 -91.39 -0.13 5.58 16 10 O -0.57 -14.44 13.52 -35.23 -0.48 -14.91 16 11 C 0.11 2.45 8.04 -8.52 -0.07 2.38 16 12 N -0.63 -13.92 3.68 -186.61 -0.69 -14.60 16 13 C 0.58 12.85 7.98 -12.42 -0.10 12.75 16 14 O -0.57 -13.86 17.02 5.30 0.09 -13.77 16 15 C -0.15 -2.92 5.87 -104.84 -0.62 -3.54 16 16 C -0.04 -0.74 9.42 -39.41 -0.37 -1.11 16 17 C -0.15 -2.03 10.21 -39.53 -0.40 -2.44 16 18 C 0.12 1.66 7.19 -83.94 -0.60 1.06 16 19 N -0.59 -6.48 6.02 -6.49 -0.04 -6.52 16 20 H 0.41 3.13 8.96 -40.82 -0.37 2.76 16 21 C 0.05 0.61 7.00 -81.21 -0.57 0.04 16 22 C -0.15 -2.02 6.13 -103.12 -0.63 -2.65 16 23 C -0.12 -1.86 6.26 -105.34 -0.66 -2.52 16 24 C -0.03 -0.60 9.30 -38.54 -0.36 -0.96 16 25 C -0.05 -0.63 6.28 -27.70 -0.17 -0.80 16 26 C -0.12 -1.12 5.92 -26.50 -0.16 -1.28 16 27 C -0.11 -0.88 5.90 -26.53 -0.16 -1.04 16 28 C -0.05 -0.42 6.28 -27.56 -0.17 -0.59 16 29 C 0.07 1.46 5.83 -8.66 -0.05 1.41 16 30 H 0.27 6.38 8.31 -40.82 -0.34 6.05 16 31 H 0.39 9.83 7.01 45.56 0.32 10.15 16 32 H 0.09 1.75 8.10 -51.93 -0.42 1.33 16 33 H 0.07 1.51 8.14 -51.93 -0.42 1.09 16 34 H 0.13 2.13 7.53 -52.49 -0.40 1.73 16 35 H 0.13 1.33 8.06 -52.49 -0.42 0.91 16 36 H 0.16 2.82 3.92 -52.49 -0.21 2.61 16 37 H 0.07 0.86 8.14 -51.93 -0.42 0.43 16 38 H 0.08 1.08 8.14 -51.93 -0.42 0.65 16 39 H 0.06 0.63 8.11 -51.93 -0.42 0.21 16 40 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 41 H 0.07 0.42 8.14 -51.93 -0.42 0.00 16 42 H 0.07 0.55 8.11 -51.93 -0.42 0.13 16 43 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 44 H 0.08 0.55 8.14 -51.93 -0.42 0.13 16 45 H 0.07 1.61 6.15 -51.93 -0.32 1.29 16 46 H 0.08 1.73 8.10 -51.93 -0.42 1.31 16 LS Contribution 372.86 15.07 5.62 5.62 Total: -1.00 -30.04 372.86 -11.07 -41.11 By element: Atomic # 1 Polarization: 21.43 SS G_CDS: -5.58 Total: 15.85 kcal Atomic # 6 Polarization: 0.09 SS G_CDS: -5.61 Total: -5.53 kcal Atomic # 7 Polarization: -42.44 SS G_CDS: -0.09 Total: -42.53 kcal Atomic # 8 Polarization: -28.30 SS G_CDS: -0.39 Total: -28.68 kcal Atomic # 14 Polarization: 19.18 SS G_CDS: -5.02 Total: 14.16 kcal Total LS contribution 5.62 Total: 5.62 kcal Total: -30.04 -11.07 -41.11 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000186836793.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.466 kcal (2) G-P(sol) polarization free energy of solvation -30.040 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 16.426 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.067 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.107 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.359 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds