Wall clock time and date at job start Sat Apr 11 2020 06:01:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86798 * 120.00046 * 2 1 4 4 H 1.48502 * 109.47262 * 274.99937 * 3 2 1 5 5 H 1.48503 * 109.46950 * 34.99808 * 3 2 1 6 6 H 1.48497 * 109.47353 * 154.99658 * 3 2 1 7 7 C 1.37875 * 120.00143 * 179.97438 * 2 1 3 8 8 H 1.07995 * 120.00552 * 185.24665 * 7 2 1 9 9 C 1.50706 * 119.99817 * 5.24127 * 7 2 1 10 10 O 1.42897 * 113.27901 * 52.33346 * 9 7 2 11 11 C 1.53492 * 114.20614 * 185.39653 * 9 7 2 12 12 N 1.47069 * 87.98683 * 139.65860 * 11 9 7 13 13 C 1.34771 * 136.05941 * 152.84245 * 12 11 9 14 14 O 1.21579 * 120.00020 * 2.78744 * 13 12 11 15 15 C 1.47652 * 120.00326 * 182.78341 * 13 12 11 16 16 C 1.39903 * 119.21861 * 171.93738 * 15 13 12 17 17 C 1.36980 * 122.28279 * 179.97438 * 16 15 13 18 18 C 1.39593 * 117.35040 * 359.97438 * 17 16 15 19 19 N 1.36224 * 131.84306 * 180.02562 * 18 17 16 20 20 H 0.96998 * 125.05020 * 359.96529 * 19 18 17 21 21 C 1.37078 * 109.90162 * 179.97438 * 19 18 17 22 22 C 1.35001 * 109.79644 * 0.03265 * 21 19 18 23 23 C 1.42064 * 120.89594 * 0.02562 * 18 17 16 24 24 C 1.39464 * 121.33735 * 0.02986 * 23 18 17 25 25 C 1.50747 * 124.44322 * 179.84520 * 22 21 19 26 26 C 1.53317 * 108.56165 * 343.56086 * 25 22 21 27 27 C 1.53134 * 109.30083 * 49.69910 * 26 25 22 28 28 C 1.51075 * 126.49475 * 180.02562 * 21 19 18 29 29 C 1.47064 * 87.88061 * 333.10223 * 12 11 9 30 30 H 0.96998 * 120.00245 * 0.02562 * 1 2 3 31 31 H 0.96700 * 114.00172 * 307.99035 * 10 9 7 32 32 H 1.09005 * 113.46935 * 24.87490 * 11 9 7 33 33 H 1.09000 * 113.46912 * 254.43730 * 11 9 7 34 34 H 1.07997 * 118.86239 * 359.97438 * 16 15 13 35 35 H 1.07996 * 121.32374 * 180.02562 * 17 16 15 36 36 H 1.08002 * 121.71602 * 180.02562 * 24 23 18 37 37 H 1.09005 * 109.61923 * 103.25746 * 25 22 21 38 38 H 1.08992 * 109.62765 * 223.81311 * 25 22 21 39 39 H 1.08997 * 109.49001 * 289.75541 * 26 25 22 40 40 H 1.09007 * 109.50554 * 169.64642 * 26 25 22 41 41 H 1.09003 * 109.47538 * 169.97121 * 27 26 25 42 42 H 1.08999 * 109.47582 * 49.95386 * 27 26 25 43 43 H 1.09003 * 109.61334 * 43.48192 * 28 21 19 44 44 H 1.09004 * 109.75727 * 283.04463 * 28 21 19 45 45 H 1.09001 * 113.46936 * 141.68220 * 29 12 11 46 46 H 1.09001 * 113.46853 * 272.11315 * 29 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.3910 2.1074 -1.3948 5 1 1.5034 2.6198 0.8030 6 1 3.5955 1.4120 0.5917 7 6 2.0046 -1.1940 0.0005 8 1 3.0811 -1.1960 0.0861 9 6 1.2558 -2.4965 -0.1181 10 8 0.3642 -2.5357 -1.2341 11 6 2.1371 -3.7447 0.0274 12 7 1.0557 -4.3527 0.8173 13 6 0.6290 -5.6045 1.0763 14 8 1.2362 -6.5584 0.6297 15 6 -0.5760 -5.8176 1.9025 16 6 -1.1030 -7.1081 2.0215 17 6 -2.2172 -7.3771 2.7716 18 6 -2.8232 -6.3041 3.4274 19 7 -3.9190 -6.2335 4.2337 20 1 -4.4765 -6.9871 4.4831 21 6 -4.1167 -4.9394 4.6400 22 6 -3.1629 -4.1435 4.1116 23 6 -2.2976 -4.9891 3.3143 24 6 -1.1633 -4.7249 2.5473 25 6 -3.0692 -2.6566 4.3421 26 6 -4.4112 -2.1630 4.8950 27 6 -4.8340 -3.0531 6.0672 28 6 -5.2216 -4.4394 5.5409 29 6 0.6410 -2.9931 1.1947 30 1 -0.4850 0.8400 -0.0004 31 1 -0.2430 -1.7844 -1.2791 32 1 3.0474 -3.5689 0.6007 33 1 2.3252 -4.2558 -0.9168 34 1 -0.6145 -7.9205 1.5041 35 1 -2.6106 -8.3795 2.8530 36 1 -0.7583 -3.7277 2.4574 37 1 -2.2778 -2.4470 5.0617 38 1 -2.8536 -2.1530 3.3998 39 1 -5.1671 -2.2103 4.1111 40 1 -4.3068 -1.1338 5.2389 41 1 -5.6885 -2.6049 6.5741 42 1 -4.0048 -3.1490 6.7681 43 1 -5.3499 -5.1257 6.3780 44 1 -6.1527 -4.3701 4.9785 45 1 -0.4406 -2.8664 1.2411 46 1 1.1486 -2.6151 2.0821 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000186836793.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:01:54 Heat of formation + Delta-G solvation = -13.436359 kcal Electronic energy + Delta-G solvation = -29597.423603 eV Core-core repulsion = 25645.354525 eV Total energy + Delta-G solvation = -3952.069078 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.157 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -42.61517 -41.41116 -39.37845 -38.14870 -36.67967 -35.91007 -34.19808 -33.27234 -32.09587 -30.57880 -29.46346 -29.44939 -27.24253 -26.96580 -25.35242 -23.95345 -22.86823 -22.17979 -21.73649 -20.32183 -19.50652 -19.19013 -18.82715 -18.10244 -17.35056 -17.12825 -16.60860 -16.46092 -16.10413 -15.98741 -15.44540 -15.17632 -15.01013 -14.95066 -14.69135 -14.45918 -14.28138 -14.06420 -13.86503 -13.66668 -13.60975 -13.47836 -13.41399 -13.05087 -12.78862 -12.71297 -12.33516 -12.25281 -12.21514 -12.03116 -11.64231 -11.52920 -11.40804 -11.29205 -10.97389 -10.67997 -10.61357 -10.18403 -9.67330 -9.11975 -8.55006 -8.24912 -6.41131 -0.13476 0.21276 1.47648 1.51654 1.60473 1.63387 1.86950 1.93500 2.09436 2.42814 2.88902 2.96356 3.45366 3.60724 3.64377 3.76348 3.94283 4.05275 4.06313 4.08412 4.18079 4.22560 4.36589 4.43282 4.48101 4.55019 4.57920 4.68439 4.69364 4.72965 4.80833 4.81371 4.89380 4.98307 5.04225 5.07572 5.14734 5.19497 5.23124 5.26719 5.40900 5.48188 5.50488 5.62620 5.73053 5.80584 5.93743 6.06551 6.64121 6.64805 6.80856 7.12108 7.30792 7.35517 8.82001 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.010207 B = 0.003909 C = 0.002932 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2742.429365 B = 7161.910624 C = 9549.038258 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.910 5.910 2 C 0.038 3.962 3 Si 0.966 3.034 4 H -0.279 1.279 5 H -0.279 1.279 6 H -0.267 1.267 7 C -0.556 4.556 8 H 0.073 0.927 9 C 0.224 3.776 10 O -0.580 6.580 11 C 0.109 3.891 12 N -0.634 5.634 13 C 0.572 3.428 14 O -0.599 6.599 15 C -0.177 4.177 16 C -0.065 4.065 17 C -0.123 4.123 18 C 0.113 3.887 19 N -0.566 5.566 20 H 0.433 0.567 21 C 0.078 3.922 22 C -0.184 4.184 23 C -0.137 4.137 24 C -0.048 4.048 25 C -0.052 4.052 26 C -0.116 4.116 27 C -0.111 4.111 28 C -0.051 4.051 29 C 0.087 3.913 30 H 0.275 0.725 31 H 0.385 0.615 32 H 0.105 0.895 33 H 0.056 0.944 34 H 0.130 0.870 35 H 0.172 0.828 36 H 0.141 0.859 37 H 0.068 0.932 38 H 0.053 0.947 39 H 0.063 0.937 40 H 0.078 0.922 41 H 0.097 0.903 42 H 0.064 0.936 43 H 0.101 0.899 44 H 0.097 0.903 45 H 0.069 0.931 46 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.642 -6.273 15.280 22.073 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.549 5.549 2 C -0.163 4.163 3 Si 0.791 3.209 4 H -0.205 1.205 5 H -0.205 1.205 6 H -0.192 1.192 7 C -0.594 4.594 8 H 0.091 0.909 9 C 0.183 3.817 10 O -0.390 6.390 11 C -0.014 4.014 12 N -0.366 5.366 13 C 0.365 3.635 14 O -0.484 6.484 15 C -0.181 4.181 16 C -0.085 4.085 17 C -0.143 4.143 18 C 0.002 3.998 19 N -0.169 5.169 20 H 0.274 0.726 21 C -0.030 4.030 22 C -0.190 4.190 23 C -0.142 4.142 24 C -0.067 4.067 25 C -0.090 4.090 26 C -0.154 4.154 27 C -0.149 4.149 28 C -0.089 4.089 29 C -0.036 4.036 30 H 0.084 0.916 31 H 0.237 0.763 32 H 0.123 0.877 33 H 0.075 0.925 34 H 0.147 0.853 35 H 0.189 0.811 36 H 0.158 0.842 37 H 0.086 0.914 38 H 0.071 0.929 39 H 0.082 0.918 40 H 0.096 0.904 41 H 0.115 0.885 42 H 0.083 0.917 43 H 0.120 0.880 44 H 0.115 0.885 45 H 0.087 0.913 46 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges -14.355 -7.491 15.043 22.101 hybrid contribution 0.440 0.925 -0.433 1.113 sum -13.915 -6.566 14.609 21.217 Atomic orbital electron populations 1.69685 1.06984 1.28866 1.49369 1.25698 0.95754 1.02339 0.92550 0.85427 0.78872 0.78620 0.78010 1.20529 1.20465 1.19165 1.21576 0.94474 0.90535 1.52837 0.90893 1.19729 0.87175 0.91775 0.83057 1.86075 1.52953 1.51343 1.48611 1.23327 0.92153 0.91337 0.94546 1.49640 1.32661 1.05002 1.49301 1.18365 0.84759 0.80477 0.79856 1.90637 1.60325 1.41008 1.56422 1.19634 0.98157 0.95752 1.04597 1.20624 0.95548 0.94784 0.97556 1.20311 0.96327 0.98136 0.99540 1.18634 0.90271 0.94938 0.96003 1.41318 1.24411 1.09445 1.41686 0.72590 1.21039 0.99181 0.82542 1.00192 1.20219 0.98183 0.96235 1.04389 1.19184 0.98055 0.93940 1.02976 1.21840 0.93371 0.98511 0.92938 1.20060 0.99185 0.89182 1.00563 1.21595 0.95441 0.99939 0.98388 1.21553 1.02513 0.93504 0.97283 1.20526 0.93755 0.97590 0.96990 1.24058 1.00314 0.77405 1.01803 0.91562 0.76314 0.87746 0.92549 0.85258 0.81110 0.84217 0.91358 0.92869 0.91800 0.90364 0.88470 0.91685 0.88050 0.88451 0.91268 0.89043 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -45.62 11.54 21.45 0.25 -45.38 16 2 C 0.04 1.88 5.35 84.65 0.45 2.34 16 3 Si 0.97 39.35 29.54 68.60 2.03 41.37 16 4 H -0.28 -11.42 7.11 99.48 0.71 -10.72 16 5 H -0.28 -11.09 7.11 99.48 0.71 -10.39 16 6 H -0.27 -10.67 7.11 99.48 0.71 -9.96 16 7 C -0.56 -28.04 8.66 25.60 0.22 -27.82 16 8 H 0.07 3.58 7.82 -2.91 -0.02 3.56 16 9 C 0.22 11.07 1.42 -11.29 -0.02 11.05 16 10 O -0.58 -30.84 13.52 -148.98 -2.01 -32.86 16 11 C 0.11 5.04 8.04 83.17 0.67 5.71 16 12 N -0.63 -29.44 3.68 -863.05 -3.18 -32.62 16 13 C 0.57 26.71 7.98 86.73 0.69 27.40 16 14 O -0.60 -30.69 17.02 -3.97 -0.07 -30.75 16 15 C -0.18 -7.07 5.87 -20.01 -0.12 -7.18 16 16 C -0.06 -2.16 9.42 22.38 0.21 -1.95 16 17 C -0.12 -3.11 10.21 22.30 0.23 -2.88 16 18 C 0.11 2.98 7.19 39.74 0.29 3.26 16 19 N -0.57 -10.46 6.02 -174.44 -1.05 -11.51 16 20 H 0.43 4.44 8.96 -92.71 -0.83 3.61 16 21 C 0.08 1.55 7.00 41.11 0.29 1.84 16 22 C -0.18 -4.97 6.13 -18.89 -0.12 -5.08 16 23 C -0.14 -4.43 6.26 -20.33 -0.13 -4.56 16 24 C -0.05 -1.80 9.30 22.94 0.21 -1.59 16 25 C -0.05 -1.29 6.28 29.97 0.19 -1.10 16 26 C -0.12 -1.98 5.92 30.75 0.18 -1.80 16 27 C -0.11 -1.30 5.90 30.73 0.18 -1.12 16 28 C -0.05 -0.56 6.28 30.05 0.19 -0.38 16 29 C 0.09 3.92 5.83 83.08 0.48 4.41 16 30 H 0.27 13.02 8.31 -92.71 -0.77 12.25 16 31 H 0.39 20.37 7.01 -74.06 -0.52 19.85 16 32 H 0.10 4.38 8.10 -2.38 -0.02 4.36 16 33 H 0.06 2.68 8.14 -2.39 -0.02 2.66 16 34 H 0.13 4.28 7.53 -2.91 -0.02 4.26 16 35 H 0.17 2.81 8.06 -2.91 -0.02 2.79 16 36 H 0.14 5.51 3.92 -2.91 -0.01 5.50 16 37 H 0.07 1.67 8.14 -2.38 -0.02 1.65 16 38 H 0.05 1.55 8.14 -2.39 -0.02 1.53 16 39 H 0.06 1.11 8.11 -2.39 -0.02 1.09 16 40 H 0.08 1.18 8.14 -2.38 -0.02 1.16 16 41 H 0.10 0.69 8.14 -2.39 -0.02 0.67 16 42 H 0.06 0.84 8.11 -2.39 -0.02 0.82 16 43 H 0.10 0.66 8.14 -2.39 -0.02 0.64 16 44 H 0.10 0.84 8.14 -2.38 -0.02 0.82 16 45 H 0.07 3.20 6.15 -2.39 -0.01 3.18 16 46 H 0.09 3.95 8.10 -2.39 -0.02 3.93 16 Total: -1.00 -67.69 372.86 -0.23 -67.92 By element: Atomic # 1 Polarization: 43.58 SS G_CDS: -0.31 Total: 43.27 kcal Atomic # 6 Polarization: -3.56 SS G_CDS: 4.11 Total: 0.54 kcal Atomic # 7 Polarization: -85.52 SS G_CDS: -3.98 Total: -89.50 kcal Atomic # 8 Polarization: -61.53 SS G_CDS: -2.08 Total: -63.61 kcal Atomic # 14 Polarization: 39.35 SS G_CDS: 2.03 Total: 41.37 kcal Total: -67.69 -0.23 -67.92 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000186836793.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 54.486 kcal (2) G-P(sol) polarization free energy of solvation -67.689 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.203 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.233 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.922 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.436 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds