Wall clock time and date at job start Sat Apr 11 2020 06:01:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31621 * 1 3 3 Si 1.86807 * 119.99761 * 2 1 4 4 H 1.48503 * 109.46662 * 239.99614 * 3 2 1 5 5 H 1.48491 * 109.46977 * 359.97438 * 3 2 1 6 6 H 1.48498 * 109.46765 * 119.99983 * 3 2 1 7 7 C 1.38808 * 120.00371 * 180.02562 * 2 1 3 8 8 H 1.08002 * 120.00197 * 197.58955 * 7 2 1 9 9 N 1.36944 * 119.99952 * 17.57691 * 7 2 1 10 10 C 1.46963 * 120.59749 * 208.20880 * 9 7 2 11 11 C 1.53368 * 108.63485 * 235.25175 * 10 9 7 12 12 N 1.46963 * 108.63449 * 310.57253 * 11 10 9 13 13 C 1.34771 * 120.59260 * 235.20395 * 12 11 10 14 14 O 1.21284 * 120.00714 * 0.02562 * 13 12 11 15 15 C 1.50705 * 119.99878 * 180.02562 * 13 12 11 16 16 O 1.42902 * 109.47318 * 180.02562 * 15 13 12 17 17 C 1.35808 * 116.99831 * 180.02562 * 16 15 13 18 18 C 1.36659 * 120.22942 * 0.02562 * 17 16 15 19 19 C 1.39191 * 120.92237 * 180.02562 * 18 17 16 20 20 C 1.36182 * 121.05835 * 0.02562 * 19 18 17 21 21 C 1.40516 * 119.76844 * 359.97438 * 20 19 18 22 22 C 1.40550 * 121.27149 * 179.72658 * 21 20 19 23 23 C 1.36104 * 119.65026 * 179.80769 * 22 21 20 24 24 C 1.39360 * 120.97626 * 0.49967 * 23 22 21 25 25 C 1.36131 * 120.97765 * 359.72187 * 24 23 22 26 26 C 1.40414 * 119.66458 * 0.02562 * 25 24 23 27 27 C 1.46966 * 118.80951 * 55.48536 * 12 11 10 28 28 C 1.46972 * 120.59022 * 28.23616 * 9 7 2 29 29 H 0.97001 * 120.00331 * 0.02562 * 1 2 3 30 30 H 1.09003 * 109.60582 * 115.50311 * 10 9 7 31 31 H 1.09000 * 109.74832 * 355.08359 * 10 9 7 32 32 H 1.09004 * 109.60330 * 190.82964 * 11 10 9 33 33 H 1.08997 * 109.74747 * 70.40705 * 11 10 9 34 34 H 1.09004 * 109.46903 * 60.00219 * 15 13 12 35 35 H 1.08994 * 109.47018 * 300.00422 * 15 13 12 36 36 H 1.08008 * 119.54384 * 0.02562 * 18 17 16 37 37 H 1.07998 * 119.47299 * 179.97438 * 19 18 17 38 38 H 1.08000 * 120.11193 * 179.97438 * 20 19 18 39 39 H 1.07998 * 120.17845 * 0.02562 * 22 21 20 40 40 H 1.08003 * 119.51283 * 180.22825 * 23 22 21 41 41 H 1.08000 * 119.50807 * 179.74355 * 24 23 22 42 42 H 1.08008 * 120.16865 * 180.02562 * 25 24 23 43 43 H 1.08993 * 109.61348 * 64.26094 * 27 12 11 44 44 H 1.09000 * 109.60889 * 184.77315 * 27 12 11 45 45 H 1.08997 * 109.60422 * 244.49272 * 28 9 7 46 46 H 1.09000 * 109.60670 * 4.83218 * 28 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 3.1040 1.6964 -1.2125 5 1 1.2852 2.7464 -0.0006 6 1 3.1039 1.6965 1.2125 7 6 2.0103 -1.2021 -0.0005 8 1 3.0525 -1.2240 0.2821 9 7 1.3736 -2.3602 -0.3592 10 6 1.8124 -3.6538 0.1829 11 6 2.1176 -4.5974 -0.9870 12 7 0.9836 -4.5690 -1.9214 13 6 0.3577 -5.7089 -2.2751 14 8 0.7287 -6.7706 -1.8212 15 6 -0.8035 -5.6643 -3.2348 16 8 -1.2942 -6.9889 -3.4507 17 6 -2.3475 -7.1259 -4.2969 18 6 -2.8924 -6.0276 -4.9007 19 6 -3.9724 -6.1513 -5.7700 20 6 -4.5179 -7.3686 -6.0440 21 6 -3.9865 -8.5224 -5.4434 22 6 -4.5284 -9.7937 -5.6993 23 6 -3.9852 -10.8898 -5.1026 24 6 -2.9039 -10.7704 -4.2316 25 6 -2.3564 -9.5547 -3.9569 26 6 -2.8868 -8.4018 -4.5579 27 6 0.5485 -3.2760 -2.4680 28 6 0.2396 -2.3318 -1.2937 29 1 -0.4851 0.8400 -0.0004 30 1 1.0206 -4.0796 0.7994 31 1 2.7103 -3.5153 0.7852 32 1 2.2576 -5.6113 -0.6122 33 1 3.0220 -4.2686 -1.4990 34 1 -0.4749 -5.2391 -4.1831 35 1 -1.5978 -5.0468 -2.8156 36 1 -2.4792 -5.0500 -4.7005 37 1 -4.3849 -5.2676 -6.2340 38 1 -5.3560 -7.4468 -6.7207 39 1 -5.3692 -9.9008 -6.3687 40 1 -4.4010 -11.8661 -5.3037 41 1 -2.4941 -11.6555 -3.7679 42 1 -1.5182 -9.4773 -3.2801 43 1 1.3431 -2.8524 -3.0822 44 1 -0.3481 -3.4171 -3.0715 45 1 -0.6640 -2.6635 -0.7824 46 1 0.0979 -1.3172 -1.6660 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000193830622.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:01:58 Heat of formation + Delta-G solvation = -6.197115 kcal Electronic energy + Delta-G solvation = -28710.882468 eV Core-core repulsion = 24759.127307 eV Total energy + Delta-G solvation = -3951.755161 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.157 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -41.89417 -41.07982 -39.51449 -38.37650 -36.91870 -35.68328 -33.50192 -33.06832 -31.99617 -31.37029 -30.14066 -29.45307 -28.24436 -25.50165 -24.57882 -24.24245 -23.94889 -22.76832 -22.15742 -20.34709 -19.39735 -18.89740 -18.25815 -17.78503 -17.62104 -17.42541 -17.02133 -16.69435 -16.41747 -15.95638 -15.56235 -15.49977 -15.25497 -15.09616 -15.02438 -14.77299 -14.47766 -14.44731 -13.98310 -13.92317 -13.39537 -13.24799 -13.16719 -12.92099 -12.66170 -12.64736 -12.52895 -12.27520 -12.05206 -11.96473 -11.95960 -11.92604 -11.78208 -11.69470 -10.90612 -10.59235 -10.49248 -9.93336 -9.63219 -8.68338 -8.54873 -7.90034 -5.37776 -0.35110 0.01413 1.09823 1.36827 1.43444 1.50642 1.51716 1.58610 2.08344 2.38714 2.51979 3.14649 3.24695 3.29364 3.55935 3.72420 3.82348 3.92996 3.96221 3.98021 4.13503 4.19393 4.19674 4.24550 4.32934 4.35485 4.49034 4.52680 4.53466 4.60370 4.65273 4.69810 4.77502 4.99765 5.03246 5.10747 5.14380 5.19402 5.31558 5.46380 5.47163 5.56903 5.58374 5.62663 5.64141 5.75405 6.03603 6.25132 6.34433 6.36347 6.98832 7.10104 7.77074 8.30423 9.15317 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.021794 B = 0.002297 C = 0.002121 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1284.472265 B =12185.787300 C =13200.941721 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.932 5.932 2 C -0.044 4.044 3 Si 0.968 3.032 4 H -0.275 1.275 5 H -0.295 1.295 6 H -0.280 1.280 7 C -0.266 4.266 8 H 0.069 0.931 9 N -0.609 5.609 10 C 0.132 3.868 11 C 0.107 3.893 12 N -0.595 5.595 13 C 0.512 3.488 14 O -0.574 6.574 15 C 0.047 3.953 16 O -0.311 6.311 17 C 0.119 3.881 18 C -0.225 4.225 19 C -0.081 4.081 20 C -0.145 4.145 21 C -0.038 4.038 22 C -0.117 4.117 23 C -0.108 4.108 24 C -0.130 4.130 25 C -0.112 4.112 26 C -0.094 4.094 27 C 0.091 3.909 28 C 0.160 3.840 29 H 0.253 0.747 30 H 0.008 0.992 31 H 0.075 0.925 32 H 0.085 0.915 33 H 0.077 0.923 34 H 0.123 0.877 35 H 0.111 0.889 36 H 0.145 0.855 37 H 0.154 0.846 38 H 0.158 0.842 39 H 0.160 0.840 40 H 0.155 0.845 41 H 0.140 0.860 42 H 0.113 0.887 43 H 0.079 0.921 44 H 0.109 0.891 45 H 0.001 0.999 46 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.492 -15.501 -15.638 23.977 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.578 5.578 2 C -0.240 4.240 3 Si 0.796 3.204 4 H -0.201 1.201 5 H -0.221 1.221 6 H -0.206 1.206 7 C -0.396 4.396 8 H 0.087 0.913 9 N -0.332 5.332 10 C 0.006 3.994 11 C -0.017 4.017 12 N -0.328 5.328 13 C 0.300 3.700 14 O -0.454 6.454 15 C -0.030 4.030 16 O -0.224 6.224 17 C 0.073 3.927 18 C -0.243 4.243 19 C -0.098 4.098 20 C -0.163 4.163 21 C -0.039 4.039 22 C -0.134 4.134 23 C -0.126 4.126 24 C -0.148 4.148 25 C -0.130 4.130 26 C -0.094 4.094 27 C -0.032 4.032 28 C 0.034 3.966 29 H 0.062 0.938 30 H 0.026 0.974 31 H 0.093 0.907 32 H 0.103 0.897 33 H 0.095 0.905 34 H 0.141 0.859 35 H 0.129 0.871 36 H 0.163 0.837 37 H 0.172 0.828 38 H 0.175 0.825 39 H 0.178 0.822 40 H 0.172 0.828 41 H 0.158 0.842 42 H 0.131 0.869 43 H 0.098 0.902 44 H 0.127 0.873 45 H 0.019 0.981 46 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges -9.274 -16.049 -15.258 24.008 hybrid contribution 0.582 1.345 0.725 1.635 sum -8.692 -14.704 -14.533 22.427 Atomic orbital electron populations 1.70144 1.06567 1.26226 1.54831 1.25773 0.96014 1.01407 1.00822 0.85339 0.77564 0.79151 0.78331 1.20086 1.22085 1.20573 1.19470 0.93146 0.85678 1.41292 0.91334 1.44260 1.36951 1.02027 1.49979 1.21354 0.98189 0.86219 0.93687 1.22062 0.88053 1.00515 0.91055 1.48027 1.32903 1.06702 1.45198 1.20458 0.83919 0.83444 0.82183 1.90668 1.67143 1.30652 1.56924 1.22612 0.95860 0.83961 1.00591 1.86033 1.45655 1.29415 1.61303 1.18985 0.87911 0.94609 0.91165 1.21209 1.01782 0.98062 1.03288 1.20942 0.94133 0.99027 0.95743 1.21279 1.01958 0.91143 1.01944 1.18254 0.93933 0.95988 0.95678 1.21370 1.00765 0.90541 1.00750 1.21274 0.95379 1.00300 0.95613 1.21148 0.97245 0.97358 0.99010 1.21072 0.99827 0.92823 0.99282 1.17765 0.98684 0.91466 1.01511 1.22703 1.01204 0.82342 0.96994 1.21146 0.88089 0.98614 0.88790 0.93816 0.97401 0.90708 0.89702 0.90473 0.85943 0.87094 0.83701 0.82830 0.82486 0.82249 0.82775 0.84190 0.86852 0.90248 0.87308 0.98058 0.90235 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -51.87 11.20 21.65 0.24 -51.63 16 2 C -0.04 -2.33 4.90 84.86 0.42 -1.91 16 3 Si 0.97 42.44 29.59 68.60 2.03 44.47 16 4 H -0.28 -11.61 7.11 99.48 0.71 -10.91 16 5 H -0.29 -13.04 7.11 99.48 0.71 -12.33 16 6 H -0.28 -12.08 7.11 99.48 0.71 -11.37 16 7 C -0.27 -13.80 9.58 84.03 0.80 -12.99 16 8 H 0.07 3.47 7.89 -2.91 -0.02 3.45 16 9 N -0.61 -28.91 2.97 -697.33 -2.07 -30.97 16 10 C 0.13 5.42 6.67 86.41 0.58 5.99 16 11 C 0.11 3.78 6.59 86.41 0.57 4.35 16 12 N -0.60 -20.17 2.94 -817.17 -2.40 -22.57 16 13 C 0.51 17.50 7.77 87.66 0.68 18.18 16 14 O -0.57 -23.99 15.91 16.00 0.25 -23.73 16 15 C 0.05 1.24 3.56 71.24 0.25 1.50 16 16 O -0.31 -9.61 8.90 -72.36 -0.64 -10.26 16 17 C 0.12 3.20 6.67 22.57 0.15 3.35 16 18 C -0.22 -4.77 8.98 22.13 0.20 -4.57 16 19 C -0.08 -1.38 9.94 22.02 0.22 -1.16 16 20 C -0.15 -2.43 9.77 22.35 0.22 -2.21 16 21 C -0.04 -0.80 5.74 -21.30 -0.12 -0.93 16 22 C -0.12 -1.84 9.77 22.34 0.22 -1.62 16 23 C -0.11 -1.66 9.95 22.04 0.22 -1.44 16 24 C -0.13 -2.55 9.95 22.05 0.22 -2.33 16 25 C -0.11 -2.92 9.56 22.31 0.21 -2.70 16 26 C -0.09 -2.48 5.75 -21.23 -0.12 -2.60 16 27 C 0.09 2.88 6.54 86.56 0.57 3.44 16 28 C 0.16 6.93 5.54 86.56 0.48 7.41 16 29 H 0.25 13.66 8.31 -92.71 -0.77 12.89 16 30 H 0.01 0.35 8.14 -2.39 -0.02 0.33 16 31 H 0.07 2.92 7.94 -2.39 -0.02 2.90 16 32 H 0.08 2.99 6.99 -2.39 -0.02 2.98 16 33 H 0.08 2.56 8.14 -2.39 -0.02 2.54 16 34 H 0.12 2.42 7.41 -2.39 -0.02 2.41 16 35 H 0.11 2.54 7.25 -2.39 -0.02 2.52 16 36 H 0.15 2.47 6.21 -2.91 -0.02 2.45 16 37 H 0.15 1.69 8.06 -2.91 -0.02 1.66 16 38 H 0.16 1.57 8.06 -2.91 -0.02 1.55 16 39 H 0.16 1.42 8.06 -2.91 -0.02 1.39 16 40 H 0.15 1.33 8.06 -2.91 -0.02 1.31 16 41 H 0.14 2.12 8.06 -2.91 -0.02 2.10 16 42 H 0.11 3.30 7.62 -2.91 -0.02 3.28 16 43 H 0.08 2.42 8.14 -2.39 -0.02 2.40 16 44 H 0.11 2.55 5.91 -2.39 -0.01 2.53 16 45 H 0.00 0.06 8.14 -2.39 -0.02 0.04 16 46 H 0.08 3.83 5.98 -2.39 -0.01 3.81 16 Total: -1.00 -71.18 374.42 4.16 -67.01 By element: Atomic # 1 Polarization: 16.94 SS G_CDS: 0.99 Total: 17.93 kcal Atomic # 6 Polarization: 3.99 SS G_CDS: 5.76 Total: 9.75 kcal Atomic # 7 Polarization: -100.95 SS G_CDS: -4.23 Total: -105.18 kcal Atomic # 8 Polarization: -33.60 SS G_CDS: -0.39 Total: -33.99 kcal Atomic # 14 Polarization: 42.44 SS G_CDS: 2.03 Total: 44.47 kcal Total: -71.18 4.16 -67.01 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000193830622.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 60.818 kcal (2) G-P(sol) polarization free energy of solvation -71.178 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.360 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.163 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.015 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.197 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds