Wall clock time and date at job start Sat Apr 11 2020 06:02:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42904 * 1 3 3 C 1.42894 * 114.00194 * 2 1 4 4 C 1.53002 * 109.47348 * 180.02562 * 3 2 1 5 5 N 1.46497 * 109.47012 * 64.99943 * 4 3 2 6 6 C 1.36276 * 119.82049 * 269.72892 * 5 4 3 7 7 N 1.36253 * 120.69847 * 0.02562 * 6 5 4 8 8 C 1.40609 * 118.60051 * 179.74585 * 6 5 4 9 9 C 1.41505 * 120.85344 * 180.28230 * 8 6 5 10 10 O 1.21425 * 119.99902 * 354.14362 * 9 8 6 11 11 C 1.50690 * 120.00078 * 174.14416 * 9 8 6 12 12 N 1.46904 * 109.47485 * 179.97438 * 11 9 8 13 13 C 1.46898 * 110.99817 * 293.95540 * 12 11 9 14 14 C 1.46892 * 111.00243 * 169.99809 * 12 11 9 15 15 C 1.50705 * 109.47297 * 190.00034 * 14 12 11 16 16 H 1.07996 * 119.99542 * 0.02562 * 15 14 12 17 17 C 1.37874 * 120.00396 * 180.02562 * 15 14 12 18 18 N 1.31518 * 119.99669 * 0.02562 * 17 15 14 19 19 Si 1.86799 * 120.00233 * 180.02562 * 17 15 14 20 20 H 1.48497 * 109.47192 * 89.99885 * 19 17 15 21 21 H 1.48500 * 109.46946 * 210.00229 * 19 17 15 22 22 H 1.48506 * 109.47018 * 329.99758 * 19 17 15 23 23 C 1.41813 * 118.28986 * 0.53864 * 8 6 5 24 24 O 1.35027 * 120.26455 * 179.69381 * 23 8 6 25 25 N 1.32309 * 119.47712 * 359.72025 * 23 8 6 26 26 C 1.33184 * 121.39737 * 359.97438 * 25 23 8 27 27 O 1.21888 * 119.06261 * 179.97438 * 26 25 23 28 28 H 1.09001 * 109.47054 * 180.02562 * 1 2 3 29 29 H 1.09002 * 109.46516 * 299.99323 * 1 2 3 30 30 H 1.08993 * 109.46873 * 59.99407 * 1 2 3 31 31 H 1.09004 * 109.46884 * 60.00421 * 3 2 1 32 32 H 1.08999 * 109.47638 * 300.00475 * 3 2 1 33 33 H 1.08995 * 109.47213 * 185.00727 * 4 3 2 34 34 H 1.09002 * 109.46973 * 305.00092 * 4 3 2 35 35 H 0.96992 * 120.00574 * 155.00446 * 7 6 5 36 36 H 0.97010 * 119.99779 * 335.00702 * 7 6 5 37 37 H 1.09004 * 109.47389 * 299.99914 * 11 9 8 38 38 H 1.09001 * 109.47582 * 60.00186 * 11 9 8 39 39 H 1.09001 * 109.47586 * 59.99675 * 13 12 11 40 40 H 1.09007 * 109.47160 * 179.97438 * 13 12 11 41 41 H 1.08997 * 109.47166 * 299.99927 * 13 12 11 42 42 H 1.08994 * 109.47547 * 310.00333 * 14 12 11 43 43 H 1.09001 * 109.47125 * 70.00539 * 14 12 11 44 44 H 0.96996 * 119.99919 * 180.02562 * 18 17 15 45 45 H 0.96701 * 114.00501 * 180.02562 * 24 23 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.5355 1.1846 -0.0006 5 7 3.9757 0.5643 -1.2527 6 6 4.1002 -0.7905 -1.3307 7 7 3.8189 -1.5779 -0.2550 8 6 4.5194 -1.3590 -2.5465 9 6 4.6591 -2.7606 -2.6823 10 8 4.5196 -3.4811 -1.7149 11 6 4.9809 -3.3589 -4.0273 12 7 5.0731 -4.8199 -3.9040 13 6 6.2167 -5.2064 -3.0669 14 6 5.1494 -5.4560 -5.2258 15 6 4.9956 -6.9476 -5.0752 16 1 4.8548 -7.3796 -4.0955 17 6 5.0347 -7.7606 -6.1880 18 7 5.2067 -7.2345 -7.3810 19 14 4.8433 -9.6094 -6.0013 20 1 3.4058 -9.9702 -6.0948 21 1 5.5974 -10.2965 -7.0804 22 1 5.3746 -10.0311 -4.6803 23 6 4.8040 -0.4912 -3.6315 24 8 5.2153 -0.9940 -4.8152 25 7 4.6637 0.8150 -3.4745 26 6 4.2595 1.3353 -2.3171 27 8 4.1452 2.5449 -2.2194 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3632 0.5138 0.8901 30 1 -0.3633 0.5139 -0.8899 31 1 1.6887 1.8463 0.8901 32 1 1.6887 1.8464 -0.8899 33 1 3.9786 2.1764 0.0890 34 1 3.8515 0.5681 0.8409 35 1 3.5554 -2.5021 -0.3861 36 1 3.8822 -1.2142 0.6421 37 1 4.1939 -3.1028 -4.7367 38 1 5.9327 -2.9640 -4.3825 39 1 6.0995 -4.7783 -2.0714 40 1 6.2614 -6.2929 -2.9919 41 1 7.1377 -4.8347 -3.5160 42 1 4.3519 -5.0709 -5.8611 43 1 6.1150 -5.2345 -5.6805 44 1 5.2338 -7.8064 -8.1640 45 1 5.3837 -0.3227 -5.4906 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000267023294.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:02:06 Heat of formation + Delta-G solvation = -83.001301 kcal Electronic energy + Delta-G solvation = -30732.839769 eV Core-core repulsion = 26366.904866 eV Total energy + Delta-G solvation = -4365.934903 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 340.163 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -42.21274 -39.63504 -38.86763 -38.23336 -37.45825 -35.76528 -35.00784 -34.12836 -32.43917 -31.11264 -30.51598 -27.95079 -26.93191 -26.74595 -24.73933 -24.57366 -23.60956 -22.94440 -20.85705 -20.19975 -19.52893 -19.06071 -17.92447 -17.17274 -16.88776 -16.83280 -16.31842 -16.03958 -15.78601 -15.63363 -15.45994 -15.03069 -14.73826 -14.56934 -14.23296 -14.09254 -14.03503 -13.53498 -13.33450 -13.20359 -13.06960 -12.62644 -12.43030 -12.35848 -11.77207 -11.74574 -11.29858 -10.96407 -10.91831 -10.78860 -10.64052 -10.47177 -10.30639 -10.27087 -10.10631 -9.99833 -9.87478 -9.34692 -8.91481 -8.42086 -8.37251 -7.11224 -5.97336 -3.97678 0.72870 1.09506 1.84606 2.81276 2.90176 3.15208 3.33825 3.36252 3.41767 3.46029 3.69823 3.96964 4.28060 4.34664 4.43934 4.54114 4.59742 4.78901 4.87742 4.92083 4.94596 5.02703 5.11838 5.28801 5.30489 5.39014 5.44808 5.83505 5.99539 6.03151 6.22111 6.39065 6.48138 6.53454 6.60371 6.93250 7.01878 7.09610 7.34705 7.41237 7.65576 7.85667 7.97594 8.04918 8.17793 8.29392 8.62546 9.10516 9.66056 11.13693 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.017315 B = 0.002759 C = 0.002557 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1616.751091 B =10147.555938 C =10947.140056 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.034 3.966 2 O -0.390 6.390 3 C 0.043 3.957 4 C 0.097 3.903 5 N -0.545 5.545 6 C 0.571 3.429 7 N -0.788 5.788 8 C -0.409 4.409 9 C 0.428 3.572 10 O -0.477 6.477 11 C 0.025 3.975 12 N -0.529 5.529 13 C 0.034 3.966 14 C 0.193 3.807 15 C -0.504 4.504 16 H 0.064 0.936 17 C 0.054 3.946 18 N -0.900 5.900 19 Si 0.898 3.102 20 H -0.281 1.281 21 H -0.288 1.288 22 H -0.274 1.274 23 C 0.508 3.492 24 O -0.428 6.428 25 N -0.645 5.645 26 C 0.678 3.322 27 O -0.536 6.536 28 H 0.090 0.910 29 H 0.043 0.957 30 H 0.042 0.958 31 H 0.072 0.928 32 H 0.064 0.936 33 H 0.125 0.875 34 H 0.093 0.907 35 H 0.438 0.562 36 H 0.406 0.594 37 H 0.101 0.899 38 H 0.064 0.936 39 H 0.060 0.940 40 H 0.072 0.928 41 H 0.004 0.996 42 H 0.030 0.970 43 H -0.008 1.008 44 H 0.260 0.740 45 H 0.414 0.586 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.210 18.512 16.973 25.650 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.062 4.062 2 O -0.309 6.309 3 C -0.035 4.035 4 C -0.026 4.026 5 N -0.271 5.271 6 C 0.336 3.664 7 N -0.337 5.337 8 C -0.424 4.424 9 C 0.310 3.690 10 O -0.356 6.356 11 C -0.104 4.104 12 N -0.253 5.253 13 C -0.115 4.115 14 C 0.068 3.932 15 C -0.542 4.542 16 H 0.082 0.918 17 C -0.147 4.147 18 N -0.540 5.540 19 Si 0.726 3.274 20 H -0.207 1.207 21 H -0.214 1.214 22 H -0.199 1.199 23 C 0.310 3.690 24 O -0.223 6.223 25 N -0.406 5.406 26 C 0.381 3.619 27 O -0.411 6.411 28 H 0.108 0.892 29 H 0.061 0.939 30 H 0.061 0.939 31 H 0.090 0.910 32 H 0.082 0.918 33 H 0.143 0.857 34 H 0.112 0.888 35 H 0.283 0.717 36 H 0.239 0.761 37 H 0.119 0.881 38 H 0.082 0.918 39 H 0.078 0.922 40 H 0.090 0.910 41 H 0.022 0.978 42 H 0.048 0.952 43 H 0.009 0.991 44 H 0.070 0.930 45 H 0.272 0.728 Dipole moment (debyes) X Y Z Total from point charges -5.571 18.586 17.217 25.940 hybrid contribution 0.235 -0.571 -0.069 0.621 sum -5.336 18.015 17.148 25.437 Atomic orbital electron populations 1.22761 0.80114 1.03256 1.00110 1.87864 1.20534 1.26960 1.95539 1.22916 0.92389 0.85968 1.02227 1.21980 0.94268 1.01849 0.84543 1.46788 1.59105 1.05149 1.16070 1.17945 0.79825 0.80762 0.87865 1.42766 1.68517 1.16955 1.05461 1.18589 1.33343 0.97508 0.92976 1.20395 0.71977 0.85389 0.91225 1.90261 1.41813 1.63138 1.40395 1.22272 1.02333 0.91378 0.94439 1.61972 1.42207 1.03373 1.17779 1.22329 0.90134 1.02209 0.96788 1.19752 0.95711 0.94387 0.83361 1.21181 1.48477 0.91102 0.93475 0.91799 1.24982 0.95585 0.98916 0.95208 1.69960 1.50704 1.35323 0.98012 0.86503 0.78077 0.85215 0.77634 1.20686 1.21402 1.19874 1.19980 0.77262 0.87230 0.84518 1.85260 1.78563 1.38342 1.20113 1.69470 1.36302 1.11677 1.23170 1.17257 0.78280 0.87033 0.79378 1.90945 1.56637 1.11539 1.81948 0.89182 0.93880 0.93886 0.90983 0.91818 0.85739 0.88840 0.71676 0.76123 0.88081 0.91827 0.92163 0.90970 0.97780 0.95226 0.99063 0.93009 0.72813 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.21 11.01 101.05 1.11 1.32 16 2 O -0.39 -2.99 9.41 -35.23 -0.33 -3.32 16 3 C 0.04 0.28 6.28 37.16 0.23 0.51 16 4 C 0.10 0.65 5.51 -4.04 -0.02 0.62 16 5 N -0.55 -5.70 2.57 -120.61 -0.31 -6.01 16 6 C 0.57 6.16 7.14 -153.63 -1.10 5.06 16 7 N -0.79 -6.52 7.30 31.59 0.23 -6.28 16 8 C -0.41 -5.40 5.78 -106.39 -0.61 -6.02 16 9 C 0.43 6.72 6.63 -33.07 -0.22 6.50 16 10 O -0.48 -7.94 11.77 5.43 0.06 -7.87 16 11 C 0.02 0.44 3.60 -4.98 -0.02 0.42 16 12 N -0.53 -11.79 4.49 -245.83 -1.10 -12.89 16 13 C 0.03 0.71 9.03 60.06 0.54 1.25 16 14 C 0.19 5.07 4.72 -4.98 -0.02 5.05 16 15 C -0.50 -14.35 8.46 -34.44 -0.29 -14.64 16 16 H 0.06 1.82 7.12 -52.49 -0.37 1.44 16 17 C 0.05 1.54 5.46 -17.82 -0.10 1.45 16 18 N -0.90 -26.84 13.29 55.43 0.74 -26.10 16 19 Si 0.90 21.85 29.54 -169.99 -5.02 16.83 16 20 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 21 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 22 H -0.27 -6.55 7.11 56.52 0.40 -6.14 16 23 C 0.51 6.54 7.88 -15.98 -0.13 6.42 16 24 O -0.43 -4.77 9.72 -16.79 -0.16 -4.94 16 25 N -0.65 -9.14 10.34 -16.56 -0.17 -9.31 16 26 C 0.68 9.55 8.32 -88.62 -0.74 8.82 16 27 O -0.54 -8.73 16.66 5.02 0.08 -8.64 16 28 H 0.09 0.51 8.14 -51.93 -0.42 0.09 16 29 H 0.04 0.19 8.14 -51.93 -0.42 -0.23 16 30 H 0.04 0.27 8.14 -51.93 -0.42 -0.15 16 31 H 0.07 0.30 8.14 -51.93 -0.42 -0.13 16 32 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 33 H 0.12 0.80 7.36 -51.93 -0.38 0.42 16 34 H 0.09 0.35 6.27 -51.93 -0.33 0.02 16 35 H 0.44 4.35 6.17 -40.82 -0.25 4.09 16 36 H 0.41 2.09 6.92 -40.82 -0.28 1.80 16 37 H 0.10 1.80 7.43 -51.93 -0.39 1.41 16 38 H 0.06 1.11 6.87 -51.93 -0.36 0.75 16 39 H 0.06 1.15 5.88 -51.93 -0.31 0.85 16 40 H 0.07 1.60 6.76 -51.92 -0.35 1.25 16 41 H 0.00 0.08 8.14 -51.93 -0.42 -0.35 16 42 H 0.03 0.82 7.93 -51.93 -0.41 0.41 16 43 H -0.01 -0.23 8.12 -51.93 -0.42 -0.66 16 44 H 0.26 7.34 8.31 -40.82 -0.34 7.00 16 45 H 0.41 2.86 8.98 45.56 0.41 3.27 16 LS Contribution 369.21 15.07 5.56 5.56 Total: -1.00 -36.94 369.21 -6.89 -43.83 By element: Atomic # 1 Polarization: 7.50 SS G_CDS: -5.11 Total: 2.39 kcal Atomic # 6 Polarization: 18.12 SS G_CDS: -1.36 Total: 16.76 kcal Atomic # 7 Polarization: -59.98 SS G_CDS: -0.62 Total: -60.60 kcal Atomic # 8 Polarization: -24.43 SS G_CDS: -0.35 Total: -24.78 kcal Atomic # 14 Polarization: 21.85 SS G_CDS: -5.02 Total: 16.83 kcal Total LS contribution 5.56 Total: 5.56 kcal Total: -36.94 -6.89 -43.83 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000267023294.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -39.173 kcal (2) G-P(sol) polarization free energy of solvation -36.938 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -76.110 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.891 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.829 kcal (6) G-S(sol) free energy of system = (1) + (5) -83.001 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds