Wall clock time and date at job start Sat Apr 11 2020 06:02:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42904 * 1 3 3 C 1.42894 * 114.00194 * 2 1 4 4 C 1.53002 * 109.47348 * 180.02562 * 3 2 1 5 5 N 1.46497 * 109.47012 * 64.99943 * 4 3 2 6 6 C 1.36276 * 119.82049 * 269.72892 * 5 4 3 7 7 N 1.36253 * 120.69847 * 0.02562 * 6 5 4 8 8 C 1.40609 * 118.60051 * 179.74585 * 6 5 4 9 9 C 1.41505 * 120.85344 * 180.28230 * 8 6 5 10 10 O 1.21425 * 119.99902 * 354.14362 * 9 8 6 11 11 C 1.50690 * 120.00078 * 174.14416 * 9 8 6 12 12 N 1.46904 * 109.47485 * 179.97438 * 11 9 8 13 13 C 1.46898 * 110.99817 * 293.95540 * 12 11 9 14 14 C 1.46892 * 111.00243 * 169.99809 * 12 11 9 15 15 C 1.50705 * 109.47297 * 190.00034 * 14 12 11 16 16 H 1.07996 * 119.99542 * 0.02562 * 15 14 12 17 17 C 1.37874 * 120.00396 * 180.02562 * 15 14 12 18 18 N 1.31518 * 119.99669 * 0.02562 * 17 15 14 19 19 Si 1.86799 * 120.00233 * 180.02562 * 17 15 14 20 20 H 1.48497 * 109.47192 * 89.99885 * 19 17 15 21 21 H 1.48500 * 109.46946 * 210.00229 * 19 17 15 22 22 H 1.48506 * 109.47018 * 329.99758 * 19 17 15 23 23 C 1.41813 * 118.28986 * 0.53864 * 8 6 5 24 24 O 1.35027 * 120.26455 * 179.69381 * 23 8 6 25 25 N 1.32309 * 119.47712 * 359.72025 * 23 8 6 26 26 C 1.33184 * 121.39737 * 359.97438 * 25 23 8 27 27 O 1.21888 * 119.06261 * 179.97438 * 26 25 23 28 28 H 1.09001 * 109.47054 * 180.02562 * 1 2 3 29 29 H 1.09002 * 109.46516 * 299.99323 * 1 2 3 30 30 H 1.08993 * 109.46873 * 59.99407 * 1 2 3 31 31 H 1.09004 * 109.46884 * 60.00421 * 3 2 1 32 32 H 1.08999 * 109.47638 * 300.00475 * 3 2 1 33 33 H 1.08995 * 109.47213 * 185.00727 * 4 3 2 34 34 H 1.09002 * 109.46973 * 305.00092 * 4 3 2 35 35 H 0.96992 * 120.00574 * 155.00446 * 7 6 5 36 36 H 0.97010 * 119.99779 * 335.00702 * 7 6 5 37 37 H 1.09004 * 109.47389 * 299.99914 * 11 9 8 38 38 H 1.09001 * 109.47582 * 60.00186 * 11 9 8 39 39 H 1.09001 * 109.47586 * 59.99675 * 13 12 11 40 40 H 1.09007 * 109.47160 * 179.97438 * 13 12 11 41 41 H 1.08997 * 109.47166 * 299.99927 * 13 12 11 42 42 H 1.08994 * 109.47547 * 310.00333 * 14 12 11 43 43 H 1.09001 * 109.47125 * 70.00539 * 14 12 11 44 44 H 0.96996 * 119.99919 * 180.02562 * 18 17 15 45 45 H 0.96701 * 114.00501 * 180.02562 * 24 23 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.5355 1.1846 -0.0006 5 7 3.9757 0.5643 -1.2527 6 6 4.1002 -0.7905 -1.3307 7 7 3.8189 -1.5779 -0.2550 8 6 4.5194 -1.3590 -2.5465 9 6 4.6591 -2.7606 -2.6823 10 8 4.5196 -3.4811 -1.7149 11 6 4.9809 -3.3589 -4.0273 12 7 5.0731 -4.8199 -3.9040 13 6 6.2167 -5.2064 -3.0669 14 6 5.1494 -5.4560 -5.2258 15 6 4.9956 -6.9476 -5.0752 16 1 4.8548 -7.3796 -4.0955 17 6 5.0347 -7.7606 -6.1880 18 7 5.2067 -7.2345 -7.3810 19 14 4.8433 -9.6094 -6.0013 20 1 3.4058 -9.9702 -6.0948 21 1 5.5974 -10.2965 -7.0804 22 1 5.3746 -10.0311 -4.6803 23 6 4.8040 -0.4912 -3.6315 24 8 5.2153 -0.9940 -4.8152 25 7 4.6637 0.8150 -3.4745 26 6 4.2595 1.3353 -2.3171 27 8 4.1452 2.5449 -2.2194 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3632 0.5138 0.8901 30 1 -0.3633 0.5139 -0.8899 31 1 1.6887 1.8463 0.8901 32 1 1.6887 1.8464 -0.8899 33 1 3.9786 2.1764 0.0890 34 1 3.8515 0.5681 0.8409 35 1 3.5554 -2.5021 -0.3861 36 1 3.8822 -1.2142 0.6421 37 1 4.1939 -3.1028 -4.7367 38 1 5.9327 -2.9640 -4.3825 39 1 6.0995 -4.7783 -2.0714 40 1 6.2614 -6.2929 -2.9919 41 1 7.1377 -4.8347 -3.5160 42 1 4.3519 -5.0709 -5.8611 43 1 6.1150 -5.2345 -5.6805 44 1 5.2338 -7.8064 -8.1640 45 1 5.3837 -0.3227 -5.4906 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000267023294.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:02:05 Heat of formation + Delta-G solvation = -115.808446 kcal Electronic energy + Delta-G solvation = -30734.262393 eV Core-core repulsion = 26366.904866 eV Total energy + Delta-G solvation = -4367.357528 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 340.163 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -43.15991 -40.79189 -39.81127 -38.94114 -38.49928 -37.41756 -35.94919 -34.99784 -34.54832 -32.22104 -31.21889 -29.67016 -28.53048 -27.39106 -26.18899 -25.53829 -24.91343 -23.78516 -22.51141 -21.25253 -20.76354 -19.94040 -18.82871 -18.45161 -17.98105 -17.78626 -17.40174 -17.03894 -16.79530 -16.62826 -16.51330 -16.30856 -16.08469 -15.77423 -15.58723 -15.36978 -15.16192 -14.87003 -14.62447 -14.24994 -14.04165 -13.79722 -13.55610 -13.22966 -13.16594 -13.01510 -12.75414 -12.51914 -12.48553 -12.28409 -12.23899 -12.04672 -11.91195 -11.42424 -11.28300 -11.17963 -10.79288 -10.71879 -10.57176 -10.34077 -9.44988 -8.91052 -8.16151 -6.25335 -0.17308 0.01588 0.98611 1.43893 1.45383 1.56519 1.62470 2.07872 2.43567 2.47099 2.59378 2.75440 2.96169 3.16344 3.35170 3.60181 3.72781 3.81600 3.84143 4.08595 4.22053 4.39127 4.42189 4.50373 4.51435 4.56359 4.61246 4.70575 4.73348 4.79174 4.85181 4.87250 5.02142 5.19699 5.24473 5.35620 5.69704 5.80844 6.04893 6.08912 6.21453 6.29706 6.38218 6.60117 6.67368 6.84660 6.91360 7.04141 7.43818 8.94834 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.017315 B = 0.002759 C = 0.002557 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1616.751091 B =10147.555938 C =10947.140056 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 O -0.404 6.404 3 C 0.044 3.956 4 C 0.088 3.912 5 N -0.537 5.537 6 C 0.583 3.417 7 N -0.765 5.765 8 C -0.424 4.424 9 C 0.436 3.564 10 O -0.491 6.491 11 C 0.023 3.977 12 N -0.540 5.540 13 C 0.042 3.958 14 C 0.208 3.792 15 C -0.523 4.523 16 H 0.060 0.940 17 C 0.002 3.998 18 N -0.933 5.933 19 Si 0.968 3.032 20 H -0.273 1.273 21 H -0.282 1.282 22 H -0.266 1.266 23 C 0.513 3.487 24 O -0.432 6.432 25 N -0.667 5.667 26 C 0.675 3.325 27 O -0.565 6.565 28 H 0.091 0.909 29 H 0.062 0.938 30 H 0.034 0.966 31 H 0.104 0.896 32 H 0.039 0.961 33 H 0.129 0.871 34 H 0.129 0.871 35 H 0.437 0.563 36 H 0.424 0.576 37 H 0.099 0.901 38 H 0.071 0.929 39 H 0.080 0.920 40 H 0.053 0.947 41 H 0.007 0.993 42 H 0.008 0.992 43 H -0.034 1.034 44 H 0.264 0.736 45 H 0.431 0.569 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.635 18.363 19.252 27.195 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.324 6.324 3 C -0.033 4.033 4 C -0.033 4.033 5 N -0.262 5.262 6 C 0.345 3.655 7 N -0.314 5.314 8 C -0.439 4.439 9 C 0.320 3.680 10 O -0.371 6.371 11 C -0.105 4.105 12 N -0.264 5.264 13 C -0.107 4.107 14 C 0.082 3.918 15 C -0.561 4.561 16 H 0.079 0.921 17 C -0.196 4.196 18 N -0.574 5.574 19 Si 0.793 3.207 20 H -0.199 1.199 21 H -0.207 1.207 22 H -0.190 1.190 23 C 0.316 3.684 24 O -0.229 6.229 25 N -0.429 5.429 26 C 0.377 3.623 27 O -0.442 6.442 28 H 0.110 0.890 29 H 0.080 0.920 30 H 0.053 0.947 31 H 0.121 0.879 32 H 0.058 0.942 33 H 0.147 0.853 34 H 0.147 0.853 35 H 0.281 0.719 36 H 0.260 0.740 37 H 0.117 0.883 38 H 0.088 0.912 39 H 0.099 0.901 40 H 0.072 0.928 41 H 0.025 0.975 42 H 0.026 0.974 43 H -0.016 1.016 44 H 0.073 0.927 45 H 0.292 0.708 Dipole moment (debyes) X Y Z Total from point charges -6.000 18.446 19.543 27.534 hybrid contribution 0.340 -0.447 -0.739 0.928 sum -5.661 17.998 18.804 26.637 Atomic orbital electron populations 1.22848 0.79443 1.03596 1.00684 1.87821 1.21354 1.27551 1.95650 1.22945 0.92089 0.85689 1.02577 1.22379 0.94508 1.02707 0.83684 1.46628 1.58263 1.04699 1.16604 1.17727 0.79094 0.81017 0.87667 1.42720 1.66395 1.16452 1.05791 1.18320 1.35069 0.96090 0.94389 1.20029 0.71843 0.86325 0.89793 1.90257 1.42978 1.63643 1.40252 1.22342 1.02769 0.88840 0.96555 1.61865 1.42972 1.05995 1.15588 1.22264 0.89788 1.01148 0.97467 1.19406 0.93383 0.93990 0.84996 1.21473 1.48768 0.92391 0.93497 0.92144 1.25876 0.94955 1.03977 0.94757 1.70079 1.51281 1.37221 0.98813 0.85405 0.78323 0.79047 0.77967 1.19895 1.20733 1.18990 1.19946 0.76809 0.86796 0.84825 1.85213 1.78138 1.39340 1.20246 1.69390 1.37259 1.12203 1.24035 1.17277 0.78095 0.86879 0.80029 1.90918 1.57964 1.12722 1.82634 0.89016 0.91956 0.94687 0.87858 0.94227 0.85337 0.85289 0.71945 0.74012 0.88317 0.91168 0.90146 0.92777 0.97492 0.97407 1.01593 0.92710 0.70814 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.32 11.01 113.37 1.25 1.56 16 2 O -0.40 -5.28 9.41 -148.98 -1.40 -6.68 16 3 C 0.04 0.48 6.28 71.98 0.45 0.94 16 4 C 0.09 0.96 5.51 86.38 0.48 1.43 16 5 N -0.54 -10.33 2.57 -653.83 -1.68 -12.01 16 6 C 0.58 11.47 7.14 133.14 0.95 12.42 16 7 N -0.76 -10.57 7.30 -53.96 -0.39 -10.96 16 8 C -0.42 -10.73 5.78 -21.01 -0.12 -10.85 16 9 C 0.44 13.31 6.63 26.49 0.18 13.49 16 10 O -0.49 -15.62 11.77 -3.48 -0.04 -15.66 16 11 C 0.02 0.84 3.60 85.55 0.31 1.15 16 12 N -0.54 -24.29 4.49 -931.67 -4.18 -28.48 16 13 C 0.04 1.72 9.03 127.69 1.15 2.87 16 14 C 0.21 11.27 4.72 85.56 0.40 11.67 16 15 C -0.52 -30.22 8.46 25.60 0.22 -30.00 16 16 H 0.06 3.46 7.12 -2.91 -0.02 3.44 16 17 C 0.00 0.13 5.46 84.65 0.46 0.59 16 18 N -0.93 -56.36 13.29 21.45 0.28 -56.07 16 19 Si 0.97 44.75 29.54 68.60 2.03 46.78 16 20 H -0.27 -12.27 7.11 99.48 0.71 -11.56 16 21 H -0.28 -12.67 7.11 99.48 0.71 -11.96 16 22 H -0.27 -11.83 7.11 99.48 0.71 -11.12 16 23 C 0.51 12.98 7.88 85.51 0.67 13.65 16 24 O -0.43 -9.57 9.72 -82.99 -0.81 -10.38 16 25 N -0.67 -18.68 10.34 -438.51 -4.54 -23.22 16 26 C 0.68 18.58 8.32 179.65 1.49 20.07 16 27 O -0.57 -18.27 16.66 -4.95 -0.08 -18.36 16 28 H 0.09 0.91 8.14 -2.39 -0.02 0.89 16 29 H 0.06 0.40 8.14 -2.39 -0.02 0.38 16 30 H 0.03 0.41 8.14 -2.39 -0.02 0.39 16 31 H 0.10 0.51 8.14 -2.38 -0.02 0.49 16 32 H 0.04 0.64 8.14 -2.39 -0.02 0.62 16 33 H 0.13 1.38 7.36 -2.39 -0.02 1.36 16 34 H 0.13 0.44 6.27 -2.39 -0.01 0.43 16 35 H 0.44 7.56 6.17 -92.71 -0.57 6.99 16 36 H 0.42 2.79 6.92 -92.70 -0.64 2.15 16 37 H 0.10 3.58 7.43 -2.38 -0.02 3.56 16 38 H 0.07 2.45 6.87 -2.39 -0.02 2.43 16 39 H 0.08 2.99 5.88 -2.39 -0.01 2.98 16 40 H 0.05 2.41 6.76 -2.38 -0.02 2.39 16 41 H 0.01 0.27 8.14 -2.39 -0.02 0.25 16 42 H 0.01 0.45 7.93 -2.39 -0.02 0.43 16 43 H -0.03 -1.95 8.12 -2.39 -0.02 -1.97 16 44 H 0.26 14.97 8.31 -92.71 -0.77 14.20 16 45 H 0.43 5.91 8.98 -74.06 -0.66 5.24 16 Total: -1.00 -80.31 369.21 -3.73 -84.04 By element: Atomic # 1 Polarization: 12.80 SS G_CDS: -0.80 Total: 12.00 kcal Atomic # 6 Polarization: 31.10 SS G_CDS: 7.89 Total: 38.99 kcal Atomic # 7 Polarization: -120.23 SS G_CDS: -10.51 Total: -130.74 kcal Atomic # 8 Polarization: -48.74 SS G_CDS: -2.33 Total: -51.07 kcal Atomic # 14 Polarization: 44.75 SS G_CDS: 2.03 Total: 46.78 kcal Total: -80.31 -3.73 -84.04 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000267023294.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -31.767 kcal (2) G-P(sol) polarization free energy of solvation -80.315 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -112.082 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.727 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.042 kcal (6) G-S(sol) free energy of system = (1) + (5) -115.808 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds