Wall clock time and date at job start Sat Apr 11 2020 06:02:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86796 * 120.00300 * 2 1 4 4 H 1.48502 * 109.46970 * 270.00059 * 3 2 1 5 5 H 1.48492 * 109.47128 * 29.99945 * 3 2 1 6 6 H 1.48498 * 109.47068 * 150.00375 * 3 2 1 7 7 C 1.37886 * 119.99712 * 180.02562 * 2 1 3 8 8 H 1.07998 * 119.99697 * 0.02562 * 7 2 1 9 9 C 1.50692 * 119.99731 * 179.97438 * 7 2 1 10 10 C 1.52999 * 109.47279 * 179.97438 * 9 7 2 11 11 N 1.46492 * 109.47602 * 180.02562 * 10 9 7 12 12 C 1.34783 * 120.00297 * 180.02562 * 11 10 9 13 13 O 1.21279 * 119.99504 * 359.97438 * 12 11 10 14 14 C 1.50697 * 119.99944 * 180.02562 * 12 11 10 15 15 N 1.46504 * 109.46772 * 179.97438 * 14 12 11 16 16 C 1.34782 * 119.99870 * 179.97438 * 15 14 12 17 17 O 1.21274 * 119.99918 * 0.02562 * 16 15 14 18 18 C 1.50701 * 119.99995 * 179.97438 * 16 15 14 19 19 C 1.50692 * 109.47307 * 180.02562 * 18 16 15 20 20 C 1.36126 * 120.17475 * 264.72629 * 19 18 16 21 21 C 1.39326 * 120.99691 * 180.32288 * 20 19 18 22 22 C 1.36133 * 120.98585 * 359.92630 * 21 20 19 23 23 C 1.40506 * 119.64915 * 0.04221 * 22 21 20 24 24 C 1.40545 * 121.27499 * 180.02562 * 23 22 21 25 25 C 1.36087 * 119.64756 * 179.97438 * 24 23 22 26 26 C 1.39378 * 120.99501 * 0.02562 * 25 24 23 27 27 C 1.36094 * 120.99655 * 359.95499 * 26 25 24 28 28 C 1.40505 * 120.17411 * 84.99927 * 19 18 16 29 29 H 0.97003 * 119.99558 * 359.97438 * 1 2 3 30 30 H 1.09005 * 109.47396 * 59.99927 * 9 7 2 31 31 H 1.09005 * 109.47473 * 299.99817 * 9 7 2 32 32 H 1.09005 * 109.46892 * 59.99709 * 10 9 7 33 33 H 1.09005 * 109.46793 * 300.00324 * 10 9 7 34 34 H 0.96997 * 120.00123 * 0.02562 * 11 10 9 35 35 H 1.08991 * 109.47670 * 60.00001 * 14 12 11 36 36 H 1.09000 * 109.47307 * 299.99113 * 14 12 11 37 37 H 0.97000 * 120.00077 * 0.02562 * 15 14 12 38 38 H 1.09005 * 109.46903 * 60.00145 * 18 16 15 39 39 H 1.09005 * 109.47132 * 300.00545 * 18 16 15 40 40 H 1.08006 * 119.50105 * 0.27486 * 20 19 18 41 41 H 1.08001 * 119.51155 * 179.97438 * 21 20 19 42 42 H 1.07997 * 120.17487 * 180.02562 * 22 21 20 43 43 H 1.07997 * 120.18005 * 359.95770 * 24 23 22 44 44 H 1.08005 * 119.50597 * 179.97438 * 25 24 23 45 45 H 1.07998 * 119.50663 * 179.97438 * 26 25 24 46 46 H 1.07996 * 120.17629 * 180.02562 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0463 -1.4001 5 1 1.4468 2.6526 0.7000 6 1 3.5468 1.4400 0.6999 7 6 2.0045 -1.1942 -0.0005 8 1 1.4644 -2.1294 -0.0014 9 6 3.5114 -1.1942 -0.0011 10 6 4.0215 -2.6366 -0.0010 11 7 5.4864 -2.6367 -0.0009 12 6 6.1603 -3.8040 -0.0014 13 8 5.5538 -4.8542 -0.0013 14 6 7.6673 -3.8040 -0.0007 15 7 8.1555 -5.1853 -0.0007 16 6 9.4807 -5.4316 -0.0007 17 8 10.2687 -4.5098 -0.0002 18 6 9.9829 -6.8524 -0.0001 19 6 11.4899 -6.8525 0.0004 20 6 12.1745 -6.9611 -1.1712 21 6 13.5676 -6.9697 -1.1900 22 6 14.2847 -6.8684 -0.0373 23 6 13.6129 -6.7541 1.1914 24 6 14.3191 -6.6469 2.4018 25 6 13.6348 -6.5372 3.5730 26 6 12.2412 -6.5300 3.5920 27 6 11.5240 -6.6314 2.4399 28 6 12.1957 -6.7464 1.2106 29 1 -0.4850 0.8401 0.0004 30 1 3.8752 -0.6805 0.8889 31 1 3.8745 -0.6802 -0.8912 32 1 3.6577 -3.1507 -0.8907 33 1 3.6584 -3.1503 0.8893 34 1 5.9714 -1.7968 -0.0006 35 1 8.0303 -3.2907 0.8896 36 1 8.0310 -3.2898 -0.8903 37 1 7.5252 -5.9225 -0.0015 38 1 9.6195 -7.3666 -0.8899 39 1 9.6196 -7.3659 0.8901 40 1 11.6295 -7.0425 -2.1001 41 1 14.0864 -7.0574 -2.1332 42 1 15.3642 -6.8760 -0.0672 43 1 15.3991 -6.6518 2.4026 44 1 14.1798 -6.4554 4.5019 45 1 11.7225 -6.4422 4.5353 46 1 10.4445 -6.6240 2.4700 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000273161123.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:02:09 Heat of formation + Delta-G solvation = -63.294611 kcal Electronic energy + Delta-G solvation = -27254.823724 eV Core-core repulsion = 23300.592630 eV Total energy + Delta-G solvation = -3954.231094 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.157 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -41.68315 -41.03327 -40.06848 -37.41507 -36.78257 -35.48232 -34.83049 -34.72525 -32.29584 -31.30593 -31.15512 -29.65869 -27.94080 -26.23034 -24.22529 -23.87236 -22.75987 -22.37885 -21.66790 -21.17848 -19.03163 -18.81890 -18.41858 -17.98091 -17.47644 -17.20010 -17.12885 -17.00083 -16.23163 -16.18229 -16.05532 -15.44591 -15.10938 -15.06245 -15.03527 -14.65471 -14.39279 -14.32574 -14.22350 -14.05026 -13.75835 -13.52256 -13.36180 -13.03171 -12.80293 -12.74720 -12.23767 -12.20475 -12.17448 -11.79704 -11.77302 -11.65025 -11.52547 -11.16186 -11.05470 -10.79187 -10.69315 -10.28947 -10.08042 -9.49253 -8.74771 -8.30438 -6.37520 -0.38252 0.13466 1.09917 1.39386 1.41439 1.46806 1.52417 1.59013 1.79503 2.13021 2.36266 2.49080 3.04941 3.21015 3.52827 3.61211 3.85585 3.89400 4.01189 4.04244 4.14833 4.26880 4.32718 4.33482 4.36807 4.38410 4.44042 4.48498 4.50611 4.63303 4.67427 4.75031 4.89847 5.06748 5.09246 5.22787 5.24684 5.33541 5.37746 5.38814 5.40583 5.53840 5.62431 5.64621 5.72654 5.94716 6.14509 6.21207 6.44142 6.48760 6.70556 7.12520 7.15630 7.27151 8.86103 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.022028 B = 0.001683 C = 0.001652 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1270.796586 B =16629.695405 C =16946.256193 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.950 5.950 2 C 0.004 3.996 3 Si 0.957 3.043 4 H -0.266 1.266 5 H -0.288 1.288 6 H -0.237 1.237 7 C -0.539 4.539 8 H 0.030 0.970 9 C -0.016 4.016 10 C 0.145 3.855 11 N -0.711 5.711 12 C 0.507 3.493 13 O -0.578 6.578 14 C 0.108 3.892 15 N -0.715 5.715 16 C 0.520 3.480 17 O -0.569 6.569 18 C -0.100 4.100 19 C -0.070 4.070 20 C -0.115 4.115 21 C -0.122 4.122 22 C -0.115 4.115 23 C -0.076 4.076 24 C -0.114 4.114 25 C -0.126 4.126 26 C -0.124 4.124 27 C -0.124 4.124 28 C -0.057 4.057 29 H 0.267 0.733 30 H 0.037 0.963 31 H 0.036 0.964 32 H 0.048 0.952 33 H 0.048 0.952 34 H 0.417 0.583 35 H 0.110 0.890 36 H 0.112 0.888 37 H 0.417 0.583 38 H 0.133 0.867 39 H 0.123 0.877 40 H 0.138 0.862 41 H 0.146 0.854 42 H 0.148 0.852 43 H 0.148 0.852 44 H 0.145 0.855 45 H 0.138 0.862 46 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 33.576 -15.076 2.119 36.867 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.590 5.590 2 C -0.193 4.193 3 Si 0.779 3.221 4 H -0.191 1.191 5 H -0.214 1.214 6 H -0.159 1.159 7 C -0.577 4.577 8 H 0.049 0.951 9 C -0.053 4.053 10 C 0.021 3.979 11 N -0.362 5.362 12 C 0.293 3.707 13 O -0.458 6.458 14 C -0.019 4.019 15 N -0.371 5.371 16 C 0.307 3.693 17 O -0.447 6.447 18 C -0.139 4.139 19 C -0.070 4.070 20 C -0.133 4.133 21 C -0.140 4.140 22 C -0.132 4.132 23 C -0.076 4.076 24 C -0.131 4.131 25 C -0.144 4.144 26 C -0.142 4.142 27 C -0.142 4.142 28 C -0.057 4.057 29 H 0.076 0.924 30 H 0.055 0.945 31 H 0.054 0.946 32 H 0.067 0.933 33 H 0.066 0.934 34 H 0.253 0.747 35 H 0.128 0.872 36 H 0.130 0.870 37 H 0.255 0.745 38 H 0.151 0.849 39 H 0.141 0.859 40 H 0.155 0.845 41 H 0.164 0.836 42 H 0.166 0.834 43 H 0.166 0.834 44 H 0.163 0.837 45 H 0.156 0.844 46 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges 33.523 -15.045 2.123 36.805 hybrid contribution -0.841 0.839 -0.018 1.188 sum 32.681 -14.207 2.105 35.698 Atomic orbital electron populations 1.70075 1.08547 1.28380 1.51965 1.26068 0.95671 1.03809 0.93756 0.85566 0.79703 0.77497 0.79284 1.19080 1.21415 1.15946 1.21259 0.91626 0.93357 1.51483 0.95128 1.19675 0.94409 0.93089 0.98155 1.21068 0.78049 0.98410 1.00348 1.45977 1.07619 1.09062 1.73565 1.20884 0.90513 0.83698 0.75560 1.90675 1.70929 1.32402 1.51838 1.21044 0.88869 0.85969 1.06040 1.45753 1.07482 1.08433 1.75405 1.20899 0.81205 0.92120 0.75043 1.90730 1.56005 1.47455 1.50540 1.20730 0.92257 0.93087 1.07837 1.19289 0.94210 1.00522 0.93020 1.21030 0.95102 0.99319 0.97819 1.21132 0.93934 0.99541 0.99388 1.21341 1.00928 0.99606 0.91375 1.18420 0.92668 1.01296 0.95233 1.21344 1.00859 0.99523 0.91415 1.21180 0.94367 0.99674 0.99162 1.21172 0.94889 0.99317 0.98792 1.21205 1.00229 1.00608 0.92155 1.18140 0.93245 1.00459 0.93830 0.92372 0.94464 0.94587 0.93342 0.93368 0.74664 0.87174 0.87040 0.74461 0.84913 0.85915 0.84452 0.83618 0.83443 0.83440 0.83713 0.84379 0.85479 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -58.49 13.96 21.45 0.30 -58.19 16 2 C 0.00 0.24 5.47 84.66 0.46 0.70 16 3 Si 0.96 41.69 27.47 68.60 1.88 43.57 16 4 H -0.27 -11.11 7.11 99.48 0.71 -10.40 16 5 H -0.29 -12.57 7.11 99.48 0.71 -11.87 16 6 H -0.24 -9.11 6.54 99.48 0.65 -8.46 16 7 C -0.54 -30.02 9.66 25.60 0.25 -29.77 16 8 H 0.03 1.91 7.99 -2.91 -0.02 1.89 16 9 C -0.02 -0.66 4.15 29.85 0.12 -0.54 16 10 C 0.14 5.50 5.61 86.38 0.48 5.99 16 11 N -0.71 -19.87 5.56 -463.06 -2.57 -22.44 16 12 C 0.51 13.72 7.90 87.66 0.69 14.42 16 13 O -0.58 -19.77 15.67 -3.03 -0.05 -19.82 16 14 C 0.11 2.19 6.15 85.63 0.53 2.71 16 15 N -0.72 -13.92 5.53 -466.79 -2.58 -16.50 16 16 C 0.52 10.69 7.82 87.66 0.69 11.38 16 17 O -0.57 -16.12 16.03 -3.01 -0.05 -16.17 16 18 C -0.10 -1.45 5.22 29.10 0.15 -1.30 16 19 C -0.07 -1.31 4.38 -19.81 -0.09 -1.40 16 20 C -0.11 -1.91 9.57 22.04 0.21 -1.70 16 21 C -0.12 -1.82 9.95 22.04 0.22 -1.60 16 22 C -0.11 -1.79 9.77 22.33 0.22 -1.57 16 23 C -0.08 -1.45 5.74 -21.30 -0.12 -1.58 16 24 C -0.11 -1.75 9.77 22.33 0.22 -1.54 16 25 C -0.13 -1.84 9.95 22.04 0.22 -1.62 16 26 C -0.12 -2.03 9.95 22.05 0.22 -1.81 16 27 C -0.12 -2.36 9.28 22.33 0.21 -2.16 16 28 C -0.06 -1.18 5.74 -21.30 -0.12 -1.30 16 29 H 0.27 15.33 8.31 -92.71 -0.77 14.55 16 30 H 0.04 1.50 7.20 -2.38 -0.02 1.48 16 31 H 0.04 1.43 7.57 -2.38 -0.02 1.41 16 32 H 0.05 1.99 8.14 -2.38 -0.02 1.97 16 33 H 0.05 1.98 8.14 -2.38 -0.02 1.96 16 34 H 0.42 8.95 8.47 -92.71 -0.79 8.16 16 35 H 0.11 2.02 8.14 -2.39 -0.02 2.00 16 36 H 0.11 2.02 8.14 -2.39 -0.02 2.00 16 37 H 0.42 7.65 7.44 -92.71 -0.69 6.96 16 38 H 0.13 1.23 8.04 -2.38 -0.02 1.21 16 39 H 0.12 1.36 6.72 -2.38 -0.02 1.34 16 40 H 0.14 1.71 8.05 -2.91 -0.02 1.69 16 41 H 0.15 1.37 8.06 -2.91 -0.02 1.35 16 42 H 0.15 1.47 8.06 -2.91 -0.02 1.44 16 43 H 0.15 1.45 8.06 -2.91 -0.02 1.42 16 44 H 0.15 1.32 8.06 -2.91 -0.02 1.29 16 45 H 0.14 1.66 8.06 -2.91 -0.02 1.64 16 46 H 0.13 2.12 6.49 -2.91 -0.02 2.10 16 Total: -1.00 -78.07 390.18 0.98 -77.09 By element: Atomic # 1 Polarization: 25.66 SS G_CDS: -0.51 Total: 25.15 kcal Atomic # 6 Polarization: -17.25 SS G_CDS: 4.56 Total: -12.69 kcal Atomic # 7 Polarization: -92.28 SS G_CDS: -4.85 Total: -97.14 kcal Atomic # 8 Polarization: -35.89 SS G_CDS: -0.10 Total: -35.98 kcal Atomic # 14 Polarization: 41.69 SS G_CDS: 1.88 Total: 43.57 kcal Total: -78.07 0.98 -77.09 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000273161123.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.796 kcal (2) G-P(sol) polarization free energy of solvation -78.071 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -64.275 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.980 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.091 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.295 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds