Wall clock time and date at job start Sat Apr 11 2020 05:59:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.08996 * 109.46906 * 2 1 4 4 N 1.46495 * 109.47062 * 240.00193 * 2 1 3 5 5 C 1.36932 * 120.00352 * 74.23082 * 4 2 1 6 6 H 1.08001 * 119.99841 * 359.97438 * 5 4 2 7 7 C 1.38816 * 120.00442 * 179.97438 * 5 4 2 8 8 N 1.31618 * 120.00387 * 179.97438 * 7 5 4 9 9 Si 1.86798 * 119.99660 * 0.02562 * 7 5 4 10 10 H 1.48499 * 109.47471 * 89.99595 * 9 7 5 11 11 H 1.48504 * 109.47235 * 209.99919 * 9 7 5 12 12 H 1.48497 * 109.47263 * 329.99682 * 9 7 5 13 13 C 1.52999 * 109.46859 * 119.99968 * 2 1 3 14 14 H 1.09002 * 109.70200 * 73.07453 * 13 2 1 15 15 C 1.52765 * 109.51051 * 312.96227 * 13 2 1 16 16 C 1.53036 * 109.38091 * 185.70651 * 15 13 2 17 17 C 1.53036 * 109.54163 * 61.23817 * 16 15 13 18 18 C 1.53189 * 109.31334 * 298.63493 * 17 16 15 19 19 N 1.46919 * 109.58714 * 193.43304 * 13 2 1 20 20 C 1.34775 * 120.63149 * 353.42129 * 19 13 2 21 21 O 1.21288 * 120.00172 * 354.63964 * 20 19 13 22 22 C 1.50705 * 120.00470 * 174.63886 * 20 19 13 23 23 N 1.46496 * 109.47419 * 179.97438 * 22 20 19 24 24 C 1.35036 * 126.03840 * 124.71605 * 23 22 20 25 25 C 1.35368 * 107.73121 * 179.83970 * 24 23 22 26 26 Cl 1.73607 * 126.05080 * 180.18261 * 25 24 23 27 27 C 1.39929 * 107.90566 * 0.42562 * 25 24 23 28 28 N 1.30847 * 108.21120 * 359.73304 * 27 25 24 29 29 H 1.08991 * 109.47787 * 305.96402 * 1 2 3 30 30 H 1.09004 * 109.46801 * 65.96575 * 1 2 3 31 31 H 1.08997 * 109.47332 * 185.95599 * 1 2 3 32 32 H 0.97006 * 119.99930 * 254.22465 * 4 2 1 33 33 H 0.96995 * 120.00180 * 180.02562 * 8 7 5 34 34 H 1.09000 * 109.56570 * 65.67103 * 15 13 2 35 35 H 1.09004 * 109.35717 * 305.61584 * 15 13 2 36 36 H 1.09005 * 109.46212 * 301.21440 * 16 15 13 37 37 H 1.09006 * 109.45585 * 181.26164 * 16 15 13 38 38 H 1.09002 * 109.49851 * 178.67889 * 17 16 15 39 39 H 1.09004 * 109.52069 * 58.60234 * 17 16 15 40 40 H 1.09001 * 109.58895 * 294.84559 * 18 17 16 41 41 H 1.09004 * 109.58722 * 174.42141 * 18 17 16 42 42 H 1.08996 * 109.46695 * 300.00304 * 22 20 19 43 43 H 1.08999 * 109.46355 * 59.99655 * 22 20 19 44 44 H 1.08004 * 126.13452 * 359.97438 * 24 23 22 45 45 H 1.08003 * 125.89163 * 179.75705 * 27 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 7 2.0183 -0.6905 -1.1962 5 6 1.9427 -0.0787 -2.4188 6 1 1.5227 0.9129 -2.5014 7 6 2.4059 -0.7328 -3.5522 8 7 2.3328 -0.1449 -4.7275 9 14 3.1317 -2.4481 -3.4095 10 1 2.0539 -3.4568 -3.5709 11 1 4.1544 -2.6426 -4.4686 12 1 3.7641 -2.6086 -2.0755 13 6 2.0400 -0.7212 1.2493 14 1 1.8808 -1.7945 1.1447 15 6 1.2848 -0.2127 2.4760 16 6 1.8923 -0.8293 3.7380 17 6 3.3576 -0.4052 3.8606 18 6 4.1375 -0.9207 2.6470 19 7 3.4735 -0.4506 1.4236 20 6 4.1650 0.2211 0.4818 21 8 3.6295 0.5234 -0.5637 22 6 5.6036 0.5967 0.7275 23 7 6.1270 1.3139 -0.4377 24 6 6.6973 2.5379 -0.4269 25 6 7.0481 2.8405 -1.6989 26 17 7.8229 4.3024 -2.2247 27 6 6.6708 1.7689 -2.5157 28 7 6.1189 0.8537 -1.7607 29 1 -0.3634 0.6034 0.8317 30 1 -0.3633 0.4186 -0.9386 31 1 -0.3634 -1.0221 0.1066 32 1 2.3953 -1.5813 -1.1220 33 1 2.6561 -0.6021 -5.5195 34 1 0.2349 -0.4962 2.4017 35 1 1.3663 0.8731 2.5260 36 1 1.8328 -1.9160 3.6762 37 1 1.3401 -0.4848 4.6124 38 1 3.7830 -0.8255 4.7719 39 1 3.4201 0.6825 3.8979 40 1 4.1529 -2.0106 2.6587 41 1 5.1578 -0.5384 2.6790 42 1 5.6667 1.2369 1.6073 43 1 6.1917 -0.3062 0.8923 44 1 6.8485 3.1625 0.4412 45 1 6.8113 1.7076 -3.5848 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001752156367.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:59:35 Heat of formation + Delta-G solvation = 78.381454 kcal Electronic energy + Delta-G solvation = -29344.728874 eV Core-core repulsion = 25426.501217 eV Total energy + Delta-G solvation = -3918.227657 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.141 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -42.29917 -41.36362 -38.25854 -37.34585 -37.11671 -34.51963 -33.91729 -33.57145 -31.95821 -30.99331 -29.66308 -28.61026 -26.14032 -25.62565 -23.98870 -22.79276 -22.16149 -21.61502 -21.41187 -20.30924 -19.23901 -18.33363 -17.86650 -16.93969 -16.60148 -16.37017 -15.94277 -15.80052 -15.48862 -15.27983 -15.09014 -14.73263 -14.68357 -14.39351 -14.24224 -14.17725 -13.95469 -13.81119 -13.69262 -13.24194 -13.07190 -12.85895 -12.69496 -12.56348 -12.33513 -12.27395 -12.11317 -11.86468 -11.67706 -11.67135 -11.42835 -11.36262 -11.20070 -10.81677 -10.64422 -9.87182 -9.43682 -9.30840 -8.83500 -7.84184 -5.05290 0.76162 1.05149 1.28624 1.37066 1.41096 1.66110 1.82908 1.90925 2.16665 2.58395 3.45254 3.48312 3.64884 3.74144 3.82431 3.93954 3.98903 4.07267 4.11882 4.15847 4.28988 4.35505 4.36317 4.55186 4.64762 4.66212 4.71722 4.76467 4.82984 4.93178 5.03074 5.07793 5.17822 5.22091 5.30761 5.36088 5.40766 5.46748 5.57120 5.84524 5.90445 5.95018 6.37355 6.62238 6.62681 7.27370 7.57457 8.05719 8.22773 9.40834 Molecular weight = 340.14amu Principal moments of inertia in cm(-1) A = 0.008724 B = 0.005460 C = 0.003835 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3208.914678 B = 5126.668304 C = 7299.129627 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C 0.186 3.814 3 H 0.033 0.967 4 N -0.715 5.715 5 C -0.144 4.144 6 H 0.034 0.966 7 C -0.076 4.076 8 N -1.000 6.000 9 Si 0.954 3.046 10 H -0.286 1.286 11 H -0.311 1.311 12 H -0.270 1.270 13 C 0.152 3.848 14 H 0.060 0.940 15 C -0.120 4.120 16 C -0.116 4.116 17 C -0.128 4.128 18 C 0.100 3.900 19 N -0.613 5.613 20 C 0.445 3.555 21 O -0.473 6.473 22 C 0.116 3.884 23 N -0.354 5.354 24 C 0.084 3.916 25 C -0.198 4.198 26 Cl -0.040 7.040 27 C 0.038 3.962 28 N -0.290 5.290 29 H 0.074 0.926 30 H 0.021 0.979 31 H 0.054 0.946 32 H 0.352 0.648 33 H 0.245 0.755 34 H 0.082 0.918 35 H 0.061 0.939 36 H 0.065 0.935 37 H 0.080 0.920 38 H 0.100 0.900 39 H 0.068 0.932 40 H 0.072 0.928 41 H 0.107 0.893 42 H 0.171 0.829 43 H 0.128 0.872 44 H 0.228 0.772 45 H 0.180 0.820 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.986 1.769 26.327 27.874 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C 0.079 3.921 3 H 0.050 0.950 4 N -0.356 5.356 5 C -0.276 4.276 6 H 0.052 0.948 7 C -0.264 4.264 8 N -0.655 5.655 9 Si 0.787 3.213 10 H -0.213 1.213 11 H -0.239 1.239 12 H -0.196 1.196 13 C 0.048 3.952 14 H 0.078 0.922 15 C -0.159 4.159 16 C -0.154 4.154 17 C -0.166 4.166 18 C -0.021 4.021 19 N -0.351 5.351 20 C 0.229 3.771 21 O -0.342 6.342 22 C -0.007 4.007 23 N -0.136 5.136 24 C -0.063 4.063 25 C -0.237 4.237 26 Cl -0.012 7.012 27 C -0.149 4.149 28 N -0.110 5.110 29 H 0.093 0.907 30 H 0.041 0.959 31 H 0.073 0.927 32 H 0.184 0.816 33 H 0.054 0.946 34 H 0.100 0.900 35 H 0.080 0.920 36 H 0.084 0.916 37 H 0.099 0.901 38 H 0.118 0.882 39 H 0.087 0.913 40 H 0.090 0.910 41 H 0.125 0.875 42 H 0.189 0.811 43 H 0.146 0.854 44 H 0.245 0.755 45 H 0.197 0.803 Dipole moment (debyes) X Y Z Total from point charges 8.117 0.978 25.742 27.009 hybrid contribution 0.736 -0.023 -1.414 1.595 sum 8.853 0.955 24.328 25.906 Atomic orbital electron populations 1.22396 0.97924 1.01278 1.00300 1.20426 0.91379 0.95522 0.84796 0.94967 1.42545 1.73360 1.16330 1.03368 1.18552 1.27382 0.97289 0.84399 0.94765 1.25111 1.04285 1.01839 0.95197 1.69880 1.57546 1.39564 0.98530 0.85371 0.77583 0.82123 0.76262 1.21325 1.23920 1.19611 1.21286 0.80447 0.98495 0.94997 0.92172 1.21875 0.99773 1.00822 0.93382 1.21523 0.96371 1.00756 0.96730 1.21905 0.95137 1.01792 0.97722 1.22051 0.97381 0.99978 0.82737 1.48058 1.09054 1.57331 1.20656 1.21274 0.89456 0.81645 0.84726 1.91386 1.68189 1.50205 1.24448 1.21980 0.92619 1.00744 0.85373 1.48165 1.45273 1.14047 1.06108 1.22774 0.96473 0.87793 0.99259 1.20808 1.15691 0.93312 0.93877 1.98293 1.79548 1.32920 1.90472 1.24031 0.97894 0.92074 1.00924 1.77759 1.20326 1.24352 0.88604 0.90675 0.95946 0.92736 0.81599 0.94582 0.89969 0.91978 0.91596 0.90110 0.88208 0.91302 0.91015 0.87536 0.81137 0.85412 0.75531 0.80286 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -5.70 8.42 71.98 0.61 -5.09 16 2 C 0.19 7.35 1.84 44.99 0.08 7.43 16 3 H 0.03 1.49 6.35 -2.39 -0.02 1.47 16 4 N -0.71 -35.95 3.05 -322.95 -0.98 -36.93 16 5 C -0.14 -9.02 8.66 84.04 0.73 -8.29 16 6 H 0.03 2.43 8.06 -2.91 -0.02 2.40 16 7 C -0.08 -4.98 5.50 84.86 0.47 -4.51 16 8 N -1.00 -71.00 13.97 21.65 0.30 -70.70 16 9 Si 0.95 52.91 27.74 68.60 1.90 54.82 16 10 H -0.29 -15.20 7.11 99.48 0.71 -14.50 16 11 H -0.31 -17.80 7.11 99.48 0.71 -17.09 16 12 H -0.27 -14.08 6.52 99.48 0.65 -13.43 16 13 C 0.15 4.19 2.61 44.83 0.12 4.30 16 14 H 0.06 1.73 8.10 -2.39 -0.02 1.71 16 15 C -0.12 -2.28 4.38 30.53 0.13 -2.15 16 16 C -0.12 -1.39 5.88 30.62 0.18 -1.21 16 17 C -0.13 -1.13 6.08 30.67 0.19 -0.94 16 18 C 0.10 1.25 6.35 86.36 0.55 1.80 16 19 N -0.61 -14.80 2.98 -795.81 -2.37 -17.17 16 20 C 0.45 13.99 7.45 87.66 0.65 14.64 16 21 O -0.47 -21.60 8.71 -3.05 -0.03 -21.62 16 22 C 0.12 2.47 5.34 85.64 0.46 2.93 16 23 N -0.35 -10.65 3.40 -351.69 -1.20 -11.85 16 24 C 0.08 2.08 11.43 83.54 0.95 3.03 16 25 C -0.20 -5.99 6.65 22.02 0.15 -5.84 16 26 Cl -0.04 -1.05 29.30 -2.72 -0.08 -1.13 16 27 C 0.04 1.45 12.02 85.25 1.02 2.47 16 28 N -0.29 -12.13 11.64 -56.98 -0.66 -12.79 16 29 H 0.07 2.12 6.84 -2.39 -0.02 2.10 16 30 H 0.02 0.95 7.88 -2.38 -0.02 0.93 16 31 H 0.05 1.80 8.14 -2.39 -0.02 1.78 16 32 H 0.35 17.70 5.55 -92.70 -0.51 17.19 16 33 H 0.25 16.84 8.31 -92.71 -0.77 16.07 16 34 H 0.08 1.50 6.83 -2.39 -0.02 1.49 16 35 H 0.06 1.26 8.14 -2.38 -0.02 1.24 16 36 H 0.07 0.79 8.14 -2.38 -0.02 0.77 16 37 H 0.08 0.75 8.14 -2.38 -0.02 0.73 16 38 H 0.10 0.42 8.14 -2.39 -0.02 0.40 16 39 H 0.07 0.63 8.14 -2.38 -0.02 0.61 16 40 H 0.07 0.87 8.14 -2.39 -0.02 0.85 16 41 H 0.11 0.70 5.93 -2.38 -0.01 0.68 16 42 H 0.17 1.63 7.83 -2.39 -0.02 1.61 16 43 H 0.13 2.13 7.73 -2.39 -0.02 2.11 16 44 H 0.23 3.01 8.06 -2.91 -0.02 2.99 16 45 H 0.18 6.61 8.06 -2.91 -0.02 6.59 16 Total: -1.00 -93.71 366.64 3.61 -90.10 By element: Atomic # 1 Polarization: 18.28 SS G_CDS: 0.43 Total: 18.71 kcal Atomic # 6 Polarization: 2.28 SS G_CDS: 6.29 Total: 8.57 kcal Atomic # 7 Polarization: -144.54 SS G_CDS: -4.91 Total: -149.45 kcal Atomic # 8 Polarization: -21.60 SS G_CDS: -0.03 Total: -21.62 kcal Atomic # 14 Polarization: 52.91 SS G_CDS: 1.90 Total: 54.82 kcal Atomic # 17 Polarization: -1.05 SS G_CDS: -0.08 Total: -1.13 kcal Total: -93.71 3.61 -90.10 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001752156367.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 168.483 kcal (2) G-P(sol) polarization free energy of solvation -93.707 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 74.776 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.605 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -90.101 kcal (6) G-S(sol) free energy of system = (1) + (5) 78.381 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds