Wall clock time and date at job start Sat Apr 11 2020 05:59:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.08994 * 109.47471 * 2 1 4 4 N 1.46509 * 109.46892 * 240.00122 * 2 1 3 5 5 C 1.36938 * 119.99541 * 76.81395 * 4 2 1 6 6 H 1.07995 * 120.00380 * 359.97438 * 5 4 2 7 7 C 1.38812 * 119.99480 * 179.97438 * 5 4 2 8 8 N 1.31618 * 120.00231 * 0.02562 * 7 5 4 9 9 Si 1.86796 * 120.00221 * 179.97438 * 7 5 4 10 10 H 1.48498 * 109.46930 * 59.99890 * 9 7 5 11 11 H 1.48495 * 109.47367 * 180.02562 * 9 7 5 12 12 H 1.48509 * 109.46950 * 300.00373 * 9 7 5 13 13 C 1.52999 * 109.47131 * 120.00558 * 2 1 3 14 14 H 1.08996 * 109.58607 * 67.33497 * 13 2 1 15 15 C 1.53204 * 109.58278 * 307.05838 * 13 2 1 16 16 C 1.53352 * 109.14548 * 185.56072 * 15 13 2 17 17 C 1.53043 * 109.60569 * 61.28998 * 16 15 13 18 18 C 1.53194 * 109.31342 * 298.62299 * 17 16 15 19 19 N 1.46919 * 109.58781 * 187.62733 * 13 2 1 20 20 C 1.34771 * 120.63190 * 353.51181 * 19 13 2 21 21 O 1.21611 * 120.00103 * 6.60779 * 20 19 13 22 22 C 1.47389 * 120.00448 * 186.60564 * 20 19 13 23 23 C 1.38066 * 126.42188 * 37.86222 * 22 20 19 24 24 N 1.34234 * 107.43948 * 179.97438 * 23 22 20 25 25 C 1.46491 * 125.73974 * 180.02562 * 24 23 22 26 26 N 1.39930 * 108.52331 * 0.02562 * 24 23 22 27 27 C 1.30536 * 108.89201 * 359.75390 * 26 24 23 28 28 Cl 1.73604 * 126.00497 * 180.26139 * 27 26 24 29 29 H 1.09006 * 109.47040 * 59.99421 * 1 2 3 30 30 H 1.08991 * 109.47119 * 179.97438 * 1 2 3 31 31 H 1.09001 * 109.47022 * 299.99838 * 1 2 3 32 32 H 0.96996 * 119.99445 * 256.81280 * 4 2 1 33 33 H 0.97002 * 120.00379 * 179.97438 * 8 7 5 34 34 H 1.08991 * 109.49316 * 305.38513 * 15 13 2 35 35 H 1.08997 * 109.49354 * 65.48613 * 15 13 2 36 36 H 1.08995 * 109.43392 * 301.24655 * 16 15 13 37 37 H 1.08995 * 109.40343 * 181.31524 * 16 15 13 38 38 H 1.08993 * 109.49545 * 178.66958 * 17 16 15 39 39 H 1.09003 * 109.49696 * 58.57456 * 17 16 15 40 40 H 1.08992 * 109.58604 * 294.84905 * 18 17 16 41 41 H 1.09001 * 109.70616 * 174.49132 * 18 17 16 42 42 H 1.08005 * 126.27794 * 359.97438 * 23 22 20 43 43 H 1.09004 * 109.47399 * 89.99903 * 25 24 23 44 44 H 1.09000 * 109.47550 * 210.00112 * 25 24 23 45 45 H 1.09003 * 109.47572 * 330.00245 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 7 2.0183 -0.6906 -1.1963 5 6 1.9914 -0.0584 -2.4107 6 1 1.6099 0.9490 -2.4867 7 6 2.4546 -0.7126 -3.5440 8 7 2.9191 -1.9406 -3.4515 9 14 2.4173 0.1494 -5.2008 10 1 3.2424 1.3824 -5.1359 11 1 2.9624 -0.7573 -6.2429 12 1 1.0169 0.5082 -5.5407 13 6 2.0400 -0.7214 1.2492 14 1 1.7887 -1.7802 1.1878 15 6 1.3911 -0.1110 2.4955 16 6 2.0111 -0.7446 3.7469 17 6 3.5115 -0.4453 3.7843 18 6 4.1814 -1.0586 2.5507 19 7 3.4977 -0.5658 1.3472 20 6 4.1945 0.0174 0.3518 21 8 3.6078 0.5279 -0.5831 22 6 5.6676 0.0365 0.3963 23 6 6.4873 -0.9780 0.8492 24 7 7.7558 -0.5588 0.7187 25 6 8.9513 -1.3243 1.0802 26 7 7.7441 0.7323 0.1795 27 6 6.5064 1.0953 -0.0212 28 17 5.9822 2.6127 -0.6822 29 1 -0.3633 0.5140 -0.8900 30 1 -0.3633 -1.0276 -0.0005 31 1 -0.3633 0.5138 0.8900 32 1 2.3606 -1.5956 -1.1279 33 1 3.2424 -2.3979 -4.2435 34 1 1.5671 0.9646 2.5075 35 1 0.3186 -0.3045 2.4790 36 1 1.8565 -1.8232 3.7217 37 1 1.5359 -0.3301 4.6359 38 1 3.9460 -0.8762 4.6863 39 1 3.6674 0.6335 3.7844 40 1 4.1049 -2.1449 2.5954 41 1 5.2313 -0.7673 2.5195 42 1 6.1666 -1.9336 1.2372 43 1 9.2812 -1.9098 0.2219 44 1 9.7448 -0.6393 1.3792 45 1 8.7178 -1.9935 1.9083 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001752160000.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:59:53 Heat of formation + Delta-G solvation = 102.383007 kcal Electronic energy + Delta-G solvation = -29492.864440 eV Core-core repulsion = 25575.677569 eV Total energy + Delta-G solvation = -3917.186872 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.141 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -41.35152 -39.70327 -36.70362 -36.38514 -35.15334 -33.13253 -32.56879 -32.11440 -30.22294 -29.72460 -27.71851 -27.06968 -24.95973 -24.16650 -22.71769 -22.17913 -21.15607 -20.40901 -19.85010 -19.04339 -17.08028 -16.50326 -16.06305 -15.75513 -15.35296 -14.92087 -14.76051 -14.40651 -14.27139 -13.79357 -13.58439 -13.40241 -13.25528 -13.16888 -12.96675 -12.80553 -12.54440 -12.14226 -12.07361 -11.90383 -11.49297 -11.35149 -11.28024 -11.06137 -10.83245 -10.77996 -10.56954 -10.52859 -10.43330 -10.31689 -10.06912 -9.63461 -9.32421 -9.22519 -8.64912 -8.46248 -8.08488 -7.85219 -6.37937 -5.40451 -2.60290 1.60414 1.65175 2.32848 2.83432 3.56816 3.64892 3.68397 3.71418 3.93177 4.46634 4.67098 4.85979 4.86615 4.92706 4.95600 5.00483 5.17709 5.25314 5.29432 5.43395 5.48113 5.52999 5.59392 5.69262 5.84220 5.88326 5.94589 5.98424 6.02086 6.16058 6.17477 6.19449 6.24280 6.45336 6.53828 6.58015 6.75643 6.88309 7.06343 7.16634 7.42585 7.50013 8.05203 8.15084 8.76857 9.21863 9.89083 10.44931 10.80357 11.84172 Molecular weight = 340.14amu Principal moments of inertia in cm(-1) A = 0.008324 B = 0.006313 C = 0.004328 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3363.061133 B = 4434.533714 C = 6467.455325 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C 0.179 3.821 3 H 0.067 0.933 4 N -0.693 5.693 5 C -0.175 4.175 6 H 0.062 0.938 7 C -0.026 4.026 8 N -0.947 5.947 9 Si 0.895 3.105 10 H -0.290 1.290 11 H -0.297 1.297 12 H -0.292 1.292 13 C 0.151 3.849 14 H 0.063 0.937 15 C -0.129 4.129 16 C -0.117 4.117 17 C -0.133 4.133 18 C 0.107 3.893 19 N -0.613 5.613 20 C 0.547 3.453 21 O -0.414 6.414 22 C -0.241 4.241 23 C 0.092 3.908 24 N -0.357 5.357 25 C 0.100 3.900 26 N -0.292 5.292 27 C 0.166 3.834 28 Cl 0.024 6.976 29 H 0.053 0.947 30 H 0.042 0.958 31 H 0.036 0.964 32 H 0.376 0.624 33 H 0.246 0.754 34 H 0.065 0.935 35 H 0.075 0.925 36 H 0.061 0.939 37 H 0.058 0.942 38 H 0.066 0.934 39 H 0.064 0.936 40 H 0.058 0.942 41 H 0.080 0.920 42 H 0.187 0.813 43 H 0.080 0.920 44 H 0.092 0.908 45 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.819 -0.129 19.192 20.724 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.230 4.230 2 C 0.069 3.931 3 H 0.084 0.916 4 N -0.333 5.333 5 C -0.307 4.307 6 H 0.080 0.920 7 C -0.219 4.219 8 N -0.599 5.599 9 Si 0.728 3.272 10 H -0.218 1.218 11 H -0.223 1.223 12 H -0.220 1.220 13 C 0.048 3.952 14 H 0.081 0.919 15 C -0.168 4.168 16 C -0.155 4.155 17 C -0.171 4.171 18 C -0.017 4.017 19 N -0.352 5.352 20 C 0.331 3.669 21 O -0.280 6.280 22 C -0.256 4.256 23 C -0.057 4.057 24 N -0.139 5.139 25 C -0.041 4.041 26 N -0.118 5.118 27 C -0.026 4.026 28 Cl 0.052 6.948 29 H 0.073 0.927 30 H 0.061 0.939 31 H 0.055 0.945 32 H 0.209 0.791 33 H 0.056 0.944 34 H 0.084 0.916 35 H 0.093 0.907 36 H 0.080 0.920 37 H 0.077 0.923 38 H 0.084 0.916 39 H 0.083 0.917 40 H 0.077 0.923 41 H 0.098 0.902 42 H 0.204 0.796 43 H 0.098 0.902 44 H 0.111 0.889 45 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges 8.779 0.716 18.324 20.332 hybrid contribution -0.481 -0.250 -0.933 1.079 sum 8.298 0.466 17.391 19.275 Atomic orbital electron populations 1.22590 0.99984 1.00498 0.99910 1.20487 0.90268 0.97283 0.85030 0.91585 1.42309 1.73440 1.14940 1.02571 1.18943 1.30603 0.96572 0.84543 0.91962 1.24496 1.03537 0.96713 0.97181 1.69622 1.50721 1.11918 1.27650 0.86409 0.77182 0.78474 0.85138 1.21764 1.22324 1.21977 1.21458 0.78637 0.99418 0.95727 0.91884 1.22075 0.99955 1.00677 0.94047 1.21557 0.95222 1.00764 0.97975 1.21899 0.96247 1.01513 0.97468 1.21745 0.97028 0.97938 0.85032 1.47623 1.06872 1.62496 1.18171 1.17142 0.84316 0.82727 0.82722 1.91254 1.67056 1.38923 1.30732 1.20453 0.96031 0.95119 1.14024 1.23126 0.83522 0.99748 0.99352 1.48051 1.06075 1.11523 1.48239 1.21980 0.85077 0.95297 1.01715 1.77122 1.18714 0.95101 1.20819 1.22604 0.90752 0.90847 0.98354 1.98418 1.88498 1.24832 1.83030 0.92739 0.93874 0.94490 0.79075 0.94406 0.91614 0.90687 0.92045 0.92280 0.91576 0.91674 0.92342 0.90181 0.79577 0.90192 0.88945 0.88958 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.15 8.84 37.16 0.33 -2.82 16 2 C 0.18 3.68 1.78 -67.92 -0.12 3.55 16 3 H 0.07 1.51 6.41 -51.93 -0.33 1.18 16 4 N -0.69 -17.71 3.15 -53.42 -0.17 -17.88 16 5 C -0.17 -5.07 8.12 -15.06 -0.12 -5.20 16 6 H 0.06 1.83 7.83 -52.49 -0.41 1.42 16 7 C -0.03 -0.80 5.50 -17.43 -0.10 -0.90 16 8 N -0.95 -30.02 13.06 55.49 0.72 -29.30 16 9 Si 0.89 24.40 29.55 -169.99 -5.02 19.37 16 10 H -0.29 -7.97 7.11 56.52 0.40 -7.56 16 11 H -0.30 -8.16 7.11 56.52 0.40 -7.76 16 12 H -0.29 -7.80 7.11 56.52 0.40 -7.40 16 13 C 0.15 2.47 2.57 -67.60 -0.17 2.30 16 14 H 0.06 1.06 8.14 -51.93 -0.42 0.64 16 15 C -0.13 -1.65 4.64 -26.44 -0.12 -1.77 16 16 C -0.12 -1.20 5.89 -26.53 -0.16 -1.35 16 17 C -0.13 -1.31 6.08 -26.61 -0.16 -1.47 16 18 C 0.11 1.21 5.38 -3.71 -0.02 1.19 16 19 N -0.61 -9.77 2.97 -166.49 -0.49 -10.26 16 20 C 0.55 10.71 7.17 -12.54 -0.09 10.62 16 21 O -0.41 -9.95 9.34 5.27 0.05 -9.90 16 22 C -0.24 -4.22 5.29 -105.04 -0.56 -4.78 16 23 C 0.09 1.22 9.09 -16.56 -0.15 1.07 16 24 N -0.36 -4.55 3.98 -67.60 -0.27 -4.82 16 25 C 0.10 0.70 11.44 59.84 0.68 1.39 16 26 N -0.29 -4.80 12.50 33.18 0.41 -4.38 16 27 C 0.17 3.02 7.87 -16.90 -0.13 2.89 16 28 Cl 0.02 0.44 28.75 -51.86 -1.49 -1.05 16 29 H 0.05 1.11 8.08 -51.93 -0.42 0.69 16 30 H 0.04 0.79 8.14 -51.93 -0.42 0.37 16 31 H 0.04 0.56 6.46 -51.93 -0.34 0.23 16 32 H 0.38 10.37 7.73 -40.82 -0.32 10.06 16 33 H 0.25 7.71 8.31 -40.82 -0.34 7.37 16 34 H 0.07 0.89 8.14 -51.93 -0.42 0.47 16 35 H 0.07 0.90 6.69 -51.93 -0.35 0.56 16 36 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 37 H 0.06 0.53 8.14 -51.93 -0.42 0.10 16 38 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 39 H 0.06 0.71 8.14 -51.93 -0.42 0.28 16 40 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 41 H 0.08 0.85 4.74 -51.93 -0.25 0.61 16 42 H 0.19 1.84 7.17 -52.48 -0.38 1.46 16 43 H 0.08 0.52 8.14 -51.93 -0.42 0.09 16 44 H 0.09 0.56 8.14 -51.93 -0.42 0.14 16 45 H 0.09 0.35 8.14 -51.93 -0.42 -0.07 16 LS Contribution 367.25 15.07 5.53 5.53 Total: -1.00 -36.44 367.25 -8.18 -44.63 By element: Atomic # 1 Polarization: 9.89 SS G_CDS: -6.57 Total: 3.32 kcal Atomic # 6 Polarization: 5.62 SS G_CDS: -0.89 Total: 4.73 kcal Atomic # 7 Polarization: -66.85 SS G_CDS: 0.21 Total: -66.64 kcal Atomic # 8 Polarization: -9.95 SS G_CDS: 0.05 Total: -9.90 kcal Atomic # 14 Polarization: 24.40 SS G_CDS: -5.02 Total: 19.37 kcal Atomic # 17 Polarization: 0.44 SS G_CDS: -1.49 Total: -1.05 kcal Total LS contribution 5.53 Total: 5.53 kcal Total: -36.44 -8.18 -44.63 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001752160000.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 147.009 kcal (2) G-P(sol) polarization free energy of solvation -36.444 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 110.565 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.182 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.626 kcal (6) G-S(sol) free energy of system = (1) + (5) 102.383 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds