Wall clock time and date at job start Sat Apr 11 2020 06:00:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09001 * 109.47339 * 2 1 4 4 N 1.46903 * 109.47238 * 240.00131 * 2 1 3 5 5 C 1.46899 * 111.00014 * 85.00064 * 4 2 1 6 6 H 1.08996 * 112.84726 * 336.19761 * 5 4 2 7 7 C 1.53775 * 113.61458 * 107.50500 * 5 4 2 8 8 C 1.53776 * 87.08395 * 139.98057 * 7 5 4 9 9 H 1.08996 * 113.69539 * 220.00865 * 8 7 5 10 10 N 1.46497 * 113.61512 * 89.11596 * 8 7 5 11 11 C 1.34773 * 120.00299 * 107.50311 * 10 8 7 12 12 O 1.21284 * 119.99752 * 0.02562 * 11 10 8 13 13 C 1.50699 * 120.00351 * 180.02562 * 11 10 8 14 14 S 1.80999 * 109.47145 * 180.02562 * 13 11 10 15 15 C 1.76204 * 99.99809 * 179.97438 * 14 13 11 16 16 H 1.07997 * 120.00380 * 359.97438 * 15 14 13 17 17 C 1.38808 * 119.99724 * 180.02562 * 15 14 13 18 18 N 1.31622 * 120.00082 * 359.97438 * 17 15 14 19 19 Si 1.86795 * 119.99662 * 179.97438 * 17 15 14 20 20 H 1.48504 * 109.47179 * 89.99662 * 19 17 15 21 21 H 1.48498 * 109.47087 * 209.99359 * 19 17 15 22 22 H 1.48500 * 109.47415 * 329.99404 * 19 17 15 23 23 C 1.53780 * 113.61384 * 205.00308 * 5 4 2 24 24 C 1.50700 * 109.46996 * 120.00407 * 2 1 3 25 25 N 1.31071 * 126.66234 * 74.95126 * 24 2 1 26 26 N 1.28836 * 107.99101 * 180.02562 * 25 24 2 27 27 N 1.28740 * 109.40029 * 359.73985 * 26 25 24 28 28 N 1.29024 * 108.80661 * 0.43359 * 27 26 25 29 29 C 1.46499 * 126.43957 * 179.83205 * 28 27 26 30 30 H 1.09000 * 109.46892 * 59.99760 * 1 2 3 31 31 H 1.08996 * 109.47516 * 179.97438 * 1 2 3 32 32 H 1.09007 * 109.47192 * 300.00226 * 1 2 3 33 33 H 1.00903 * 110.99640 * 321.04793 * 4 2 1 34 34 H 1.09003 * 113.61460 * 254.53082 * 7 5 4 35 35 H 1.09004 * 113.61482 * 25.43169 * 7 5 4 36 36 H 0.97006 * 120.00264 * 287.50596 * 10 8 7 37 37 H 1.09009 * 109.46901 * 299.99522 * 13 11 10 38 38 H 1.08990 * 109.47630 * 59.99574 * 13 11 10 39 39 H 0.97000 * 120.00485 * 180.02562 * 18 17 15 40 40 H 1.08996 * 113.61234 * 334.56526 * 23 5 4 41 41 H 1.08994 * 113.61513 * 105.47204 * 23 5 4 42 42 H 1.09002 * 109.47391 * 269.69175 * 29 28 27 43 43 H 1.09001 * 109.46813 * 149.69231 * 29 28 27 44 44 H 1.09004 * 109.47041 * 29.69359 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 7 2.0197 -0.6925 -1.1995 5 6 2.0825 0.2226 -2.3469 6 1 1.4068 1.0722 -2.2482 7 6 3.5153 0.6156 -2.7437 8 6 3.0600 0.4913 -4.2073 9 1 3.8017 0.0295 -4.8590 10 7 2.5125 1.7330 -4.7590 11 6 3.2215 2.4400 -5.6611 12 8 4.3128 2.0478 -6.0166 13 6 2.6585 3.7176 -6.2282 14 16 3.8376 4.4269 -7.4041 15 6 2.9492 5.8664 -7.8975 16 1 1.9750 6.0700 -7.4782 17 6 3.5012 6.7383 -8.8258 18 7 4.6883 6.4901 -9.3372 19 14 2.5591 8.2640 -9.3494 20 1 2.9079 9.3938 -8.4509 21 1 2.9200 8.6134 -10.7468 22 1 1.1005 7.9978 -9.2667 23 6 1.9845 -0.4876 -3.7073 24 6 2.0323 -0.7105 1.2304 25 7 2.0358 -2.0043 1.4405 26 7 2.5431 -2.2169 2.6055 27 7 2.8683 -1.0927 3.1419 28 7 2.5639 -0.1396 2.3274 29 6 2.7647 1.2942 2.5516 30 1 -0.3633 0.5139 -0.8900 31 1 -0.3634 -1.0276 -0.0005 32 1 -0.3634 0.5139 0.8900 33 1 1.4495 -1.4979 -1.4101 34 1 3.7852 1.6314 -2.4551 35 1 4.2656 -0.1209 -2.4558 36 1 1.6395 2.0465 -4.4749 37 1 1.7193 3.5054 -6.7393 38 1 2.4800 4.4264 -5.4198 39 1 5.0742 7.0995 -9.9857 40 1 2.3163 -1.5255 -3.6829 41 1 1.0187 -0.3623 -4.1967 42 1 1.8786 1.7153 3.0266 43 1 2.9356 1.7908 1.5965 44 1 3.6293 1.4431 3.1985 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001752613908.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:00:03 Heat of formation + Delta-G solvation = 106.724506 kcal Electronic energy + Delta-G solvation = -26145.539420 eV Core-core repulsion = 22262.877268 eV Total energy + Delta-G solvation = -3882.662153 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.142 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -44.50960 -40.32836 -38.52372 -36.69733 -35.95314 -33.30367 -32.47258 -32.11034 -29.92875 -28.89599 -28.75736 -26.07126 -25.55603 -25.24214 -24.02571 -23.17154 -21.58796 -20.90065 -19.55679 -17.98953 -17.90976 -17.62375 -16.81634 -16.46894 -16.15368 -15.82487 -15.15846 -14.88383 -14.84640 -14.49710 -14.43594 -14.25002 -14.03078 -13.69227 -13.36122 -13.20327 -12.87553 -12.80574 -12.63478 -12.59009 -12.52453 -12.12261 -11.96403 -11.78332 -11.41981 -11.24651 -11.10607 -11.07009 -10.88172 -10.81260 -10.76230 -10.39811 -9.85957 -9.47681 -9.13075 -9.10116 -8.90051 -8.28566 -6.54892 -6.25908 -3.96872 0.85136 1.54772 1.92723 2.94869 2.99759 3.18569 3.24005 3.27462 3.28929 3.57062 3.63127 3.85800 4.03129 4.15000 4.16023 4.26351 4.32380 4.34530 4.60279 4.64962 4.68641 4.70540 4.86433 4.99492 5.06847 5.09310 5.09480 5.28539 5.36059 5.42977 5.46918 5.51654 5.59107 5.70861 5.74609 5.80930 5.83376 5.95079 6.06815 6.39574 6.66250 6.77932 7.54980 7.62378 8.28290 8.30617 8.54357 9.19336 10.81460 Molecular weight = 340.14amu Principal moments of inertia in cm(-1) A = 0.021805 B = 0.001788 C = 0.001739 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1283.811509 B =15656.703332 C =16095.672745 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C 0.168 3.832 3 H 0.103 0.897 4 N -0.663 5.663 5 C 0.058 3.942 6 H 0.078 0.922 7 C -0.138 4.138 8 C 0.125 3.875 9 H 0.107 0.893 10 N -0.723 5.723 11 C 0.534 3.466 12 O -0.514 6.514 13 C -0.154 4.154 14 S -0.059 6.059 15 C -0.537 4.537 16 H 0.072 0.928 17 C 0.073 3.927 18 N -0.867 5.867 19 Si 0.919 3.081 20 H -0.277 1.277 21 H -0.282 1.282 22 H -0.272 1.272 23 C -0.147 4.147 24 C 0.200 3.800 25 N -0.290 5.290 26 N -0.077 5.077 27 N -0.099 5.099 28 N -0.308 5.308 29 C 0.076 3.924 30 H 0.076 0.924 31 H 0.073 0.927 32 H 0.064 0.936 33 H 0.357 0.643 34 H 0.069 0.931 35 H 0.097 0.903 36 H 0.396 0.604 37 H 0.090 0.910 38 H 0.089 0.911 39 H 0.269 0.731 40 H 0.102 0.898 41 H 0.075 0.925 42 H 0.098 0.902 43 H 0.106 0.894 44 H 0.109 0.891 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.612 -10.756 22.130 26.797 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.239 4.239 2 C 0.054 3.946 3 H 0.121 0.879 4 N -0.295 5.295 5 C -0.051 4.051 6 H 0.096 0.904 7 C -0.178 4.178 8 C 0.018 3.982 9 H 0.125 0.875 10 N -0.376 5.376 11 C 0.320 3.680 12 O -0.387 6.387 13 C -0.304 4.304 14 S 0.167 5.833 15 C -0.685 4.685 16 H 0.091 0.909 17 C -0.136 4.136 18 N -0.502 5.502 19 Si 0.745 3.255 20 H -0.203 1.203 21 H -0.207 1.207 22 H -0.197 1.197 23 C -0.186 4.186 24 C -0.079 4.079 25 N -0.139 5.139 26 N -0.071 5.071 27 N -0.085 5.085 28 N -0.110 5.110 29 C -0.065 4.065 30 H 0.095 0.905 31 H 0.092 0.908 32 H 0.083 0.917 33 H 0.178 0.822 34 H 0.088 0.912 35 H 0.115 0.885 36 H 0.230 0.770 37 H 0.108 0.892 38 H 0.107 0.893 39 H 0.079 0.921 40 H 0.121 0.879 41 H 0.094 0.906 42 H 0.117 0.883 43 H 0.124 0.876 44 H 0.127 0.873 Dipole moment (debyes) X Y Z Total from point charges -7.694 -12.450 22.334 26.702 hybrid contribution -3.280 2.672 -0.222 4.236 sum -10.973 -9.778 22.112 26.551 Atomic orbital electron populations 1.22514 0.93944 1.04036 1.03413 1.19915 0.93697 0.96136 0.84821 0.87917 1.60406 1.57417 1.09535 1.02174 1.23222 0.98403 0.95079 0.88429 0.90377 1.23577 0.96373 1.02350 0.95512 1.21590 0.96620 0.85304 0.94691 0.87526 1.45724 1.22021 1.24608 1.45271 1.20333 0.85006 0.84856 0.77768 1.90712 1.20225 1.69243 1.58520 1.23532 1.05751 0.96681 1.04454 1.85434 1.22666 1.26727 1.48448 1.22859 1.06437 1.09366 1.29818 0.90939 1.24997 0.95155 0.98217 0.95229 1.70009 1.15291 1.36866 1.28022 0.86167 0.79692 0.81636 0.77993 1.20276 1.20726 1.19711 1.23602 1.00056 1.00105 0.94819 1.25978 0.99215 0.90387 0.92363 1.74964 1.17803 1.11547 1.09566 1.78636 1.11406 1.15407 1.01656 1.78898 1.19034 0.92333 1.18193 1.48392 1.40215 1.10369 1.12051 1.22441 1.05693 0.72700 1.05703 0.90523 0.90815 0.91651 0.82162 0.91192 0.88465 0.76973 0.89208 0.89272 0.92139 0.87928 0.90601 0.88332 0.87592 0.87255 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -0.67 9.13 37.16 0.34 -0.33 16 2 C 0.17 0.85 2.82 -68.86 -0.19 0.66 16 3 H 0.10 0.35 6.55 -51.93 -0.34 0.01 16 4 N -0.66 -4.04 6.29 -100.11 -0.63 -4.66 16 5 C 0.06 0.34 3.71 -66.90 -0.25 0.09 16 6 H 0.08 0.37 7.49 -51.93 -0.39 -0.02 16 7 C -0.14 -1.19 7.68 -25.92 -0.20 -1.39 16 8 C 0.12 1.26 4.32 -67.12 -0.29 0.97 16 9 H 0.11 1.34 7.46 -51.93 -0.39 0.96 16 10 N -0.72 -8.32 5.26 -53.02 -0.28 -8.60 16 11 C 0.53 9.24 7.85 -10.99 -0.09 9.15 16 12 O -0.51 -11.14 15.46 5.55 0.09 -11.05 16 13 C -0.15 -2.91 6.16 36.00 0.22 -2.68 16 14 S -0.06 -1.56 20.57 -107.50 -2.21 -3.77 16 15 C -0.54 -14.88 9.50 30.94 0.29 -14.59 16 16 H 0.07 1.89 7.80 -52.49 -0.41 1.48 16 17 C 0.07 2.05 5.49 -17.43 -0.10 1.96 16 18 N -0.87 -25.68 13.22 55.49 0.73 -24.95 16 19 Si 0.92 20.90 29.55 -169.99 -5.02 15.88 16 20 H -0.28 -6.17 7.11 56.52 0.40 -5.77 16 21 H -0.28 -6.33 7.11 56.52 0.40 -5.93 16 22 H -0.27 -6.00 7.11 56.52 0.40 -5.60 16 23 C -0.15 -0.97 7.40 -25.92 -0.19 -1.16 16 24 C 0.20 1.63 6.97 -155.43 -1.08 0.54 16 25 N -0.29 -3.31 12.36 32.70 0.40 -2.90 16 26 N -0.08 -0.99 13.43 60.35 0.81 -0.18 16 27 N -0.10 -1.07 13.29 60.35 0.80 -0.27 16 28 N -0.31 -2.29 3.75 -65.02 -0.24 -2.54 16 29 C 0.08 0.17 11.21 59.85 0.67 0.84 16 30 H 0.08 0.21 7.74 -51.93 -0.40 -0.19 16 31 H 0.07 0.35 8.13 -51.93 -0.42 -0.07 16 32 H 0.06 0.21 8.14 -51.92 -0.42 -0.21 16 33 H 0.36 2.09 8.29 -39.29 -0.33 1.76 16 34 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 35 H 0.10 0.90 8.14 -51.93 -0.42 0.48 16 36 H 0.40 3.33 8.70 -40.82 -0.36 2.97 16 37 H 0.09 1.56 8.14 -51.91 -0.42 1.14 16 38 H 0.09 1.53 8.14 -51.92 -0.42 1.11 16 39 H 0.27 7.40 8.31 -40.82 -0.34 7.06 16 40 H 0.10 0.65 8.14 -51.93 -0.42 0.23 16 41 H 0.08 0.45 8.14 -51.93 -0.42 0.02 16 42 H 0.10 0.02 8.14 -51.93 -0.42 -0.40 16 43 H 0.11 0.04 7.01 -51.93 -0.36 -0.32 16 44 H 0.11 0.15 8.14 -51.93 -0.42 -0.27 16 LS Contribution 387.51 15.07 5.84 5.84 Total: -1.00 -37.58 387.51 -6.91 -44.49 By element: Atomic # 1 Polarization: 5.01 SS G_CDS: -6.33 Total: -1.32 kcal Atomic # 6 Polarization: -5.09 SS G_CDS: -0.86 Total: -5.96 kcal Atomic # 7 Polarization: -45.70 SS G_CDS: 1.60 Total: -44.10 kcal Atomic # 8 Polarization: -11.14 SS G_CDS: 0.09 Total: -11.05 kcal Atomic # 14 Polarization: 20.90 SS G_CDS: -5.02 Total: 15.88 kcal Atomic # 16 Polarization: -1.56 SS G_CDS: -2.21 Total: -3.77 kcal Total LS contribution 5.84 Total: 5.84 kcal Total: -37.58 -6.91 -44.49 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001752613908.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 151.210 kcal (2) G-P(sol) polarization free energy of solvation -37.576 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 113.634 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.909 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.485 kcal (6) G-S(sol) free energy of system = (1) + (5) 106.725 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds