Wall clock time and date at job start Sat Apr 11 2020 06:00:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09001 * 109.47339 * 2 1 4 4 N 1.46903 * 109.47238 * 240.00131 * 2 1 3 5 5 C 1.46899 * 111.00014 * 85.00064 * 4 2 1 6 6 H 1.08996 * 112.84726 * 336.19761 * 5 4 2 7 7 C 1.53775 * 113.61458 * 107.50500 * 5 4 2 8 8 C 1.53776 * 87.08395 * 139.98057 * 7 5 4 9 9 H 1.08996 * 113.69539 * 220.00865 * 8 7 5 10 10 N 1.46497 * 113.61512 * 89.11596 * 8 7 5 11 11 C 1.34773 * 120.00299 * 107.50311 * 10 8 7 12 12 O 1.21284 * 119.99752 * 0.02562 * 11 10 8 13 13 C 1.50699 * 120.00351 * 180.02562 * 11 10 8 14 14 S 1.80999 * 109.47145 * 180.02562 * 13 11 10 15 15 C 1.76204 * 99.99809 * 179.97438 * 14 13 11 16 16 H 1.07997 * 120.00380 * 359.97438 * 15 14 13 17 17 C 1.38808 * 119.99724 * 180.02562 * 15 14 13 18 18 N 1.31622 * 120.00082 * 359.97438 * 17 15 14 19 19 Si 1.86795 * 119.99662 * 179.97438 * 17 15 14 20 20 H 1.48504 * 109.47179 * 89.99662 * 19 17 15 21 21 H 1.48498 * 109.47087 * 209.99359 * 19 17 15 22 22 H 1.48500 * 109.47415 * 329.99404 * 19 17 15 23 23 C 1.53780 * 113.61384 * 205.00308 * 5 4 2 24 24 C 1.50700 * 109.46996 * 120.00407 * 2 1 3 25 25 N 1.31071 * 126.66234 * 74.95126 * 24 2 1 26 26 N 1.28836 * 107.99101 * 180.02562 * 25 24 2 27 27 N 1.28740 * 109.40029 * 359.73985 * 26 25 24 28 28 N 1.29024 * 108.80661 * 0.43359 * 27 26 25 29 29 C 1.46499 * 126.43957 * 179.83205 * 28 27 26 30 30 H 1.09000 * 109.46892 * 59.99760 * 1 2 3 31 31 H 1.08996 * 109.47516 * 179.97438 * 1 2 3 32 32 H 1.09007 * 109.47192 * 300.00226 * 1 2 3 33 33 H 1.00903 * 110.99640 * 321.04793 * 4 2 1 34 34 H 1.09003 * 113.61460 * 254.53082 * 7 5 4 35 35 H 1.09004 * 113.61482 * 25.43169 * 7 5 4 36 36 H 0.97006 * 120.00264 * 287.50596 * 10 8 7 37 37 H 1.09009 * 109.46901 * 299.99522 * 13 11 10 38 38 H 1.08990 * 109.47630 * 59.99574 * 13 11 10 39 39 H 0.97000 * 120.00485 * 180.02562 * 18 17 15 40 40 H 1.08996 * 113.61234 * 334.56526 * 23 5 4 41 41 H 1.08994 * 113.61513 * 105.47204 * 23 5 4 42 42 H 1.09002 * 109.47391 * 269.69175 * 29 28 27 43 43 H 1.09001 * 109.46813 * 149.69231 * 29 28 27 44 44 H 1.09004 * 109.47041 * 29.69359 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 7 2.0197 -0.6925 -1.1995 5 6 2.0825 0.2226 -2.3469 6 1 1.4068 1.0722 -2.2482 7 6 3.5153 0.6156 -2.7437 8 6 3.0600 0.4913 -4.2073 9 1 3.8017 0.0295 -4.8590 10 7 2.5125 1.7330 -4.7590 11 6 3.2215 2.4400 -5.6611 12 8 4.3128 2.0478 -6.0166 13 6 2.6585 3.7176 -6.2282 14 16 3.8376 4.4269 -7.4041 15 6 2.9492 5.8664 -7.8975 16 1 1.9750 6.0700 -7.4782 17 6 3.5012 6.7383 -8.8258 18 7 4.6883 6.4901 -9.3372 19 14 2.5591 8.2640 -9.3494 20 1 2.9079 9.3938 -8.4509 21 1 2.9200 8.6134 -10.7468 22 1 1.1005 7.9978 -9.2667 23 6 1.9845 -0.4876 -3.7073 24 6 2.0323 -0.7105 1.2304 25 7 2.0358 -2.0043 1.4405 26 7 2.5431 -2.2169 2.6055 27 7 2.8683 -1.0927 3.1419 28 7 2.5639 -0.1396 2.3274 29 6 2.7647 1.2942 2.5516 30 1 -0.3633 0.5139 -0.8900 31 1 -0.3634 -1.0276 -0.0005 32 1 -0.3634 0.5139 0.8900 33 1 1.4495 -1.4979 -1.4101 34 1 3.7852 1.6314 -2.4551 35 1 4.2656 -0.1209 -2.4558 36 1 1.6395 2.0465 -4.4749 37 1 1.7193 3.5054 -6.7393 38 1 2.4800 4.4264 -5.4198 39 1 5.0742 7.0995 -9.9857 40 1 2.3163 -1.5255 -3.6829 41 1 1.0187 -0.3623 -4.1967 42 1 1.8786 1.7153 3.0266 43 1 2.9356 1.7908 1.5965 44 1 3.6293 1.4431 3.1985 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001752613908.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:00:02 Heat of formation + Delta-G solvation = 76.440338 kcal Electronic energy + Delta-G solvation = -26146.852640 eV Core-core repulsion = 22262.877268 eV Total energy + Delta-G solvation = -3883.975373 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.142 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -45.17563 -41.22844 -39.57681 -37.32531 -36.52622 -34.57272 -34.34242 -32.87319 -30.84009 -29.77206 -29.20592 -27.64929 -26.68980 -25.78511 -24.71793 -23.83722 -22.17741 -22.00058 -20.36284 -19.80961 -18.50291 -18.22263 -17.95180 -17.14884 -17.02173 -16.86022 -16.71236 -16.31008 -15.85523 -15.47727 -15.14337 -14.91192 -14.61705 -14.55782 -14.47041 -14.02309 -13.87789 -13.69790 -13.30585 -13.28229 -13.14495 -13.14452 -12.98440 -12.86738 -12.65830 -12.52089 -12.41470 -12.06664 -11.79775 -11.72198 -11.51965 -11.46165 -11.12556 -11.05273 -10.92046 -10.24055 -10.03416 -9.48624 -8.64494 -8.32858 -6.10641 0.23277 1.11281 1.20857 1.29103 1.43878 1.49383 1.59034 1.64068 2.26771 2.31450 2.83826 3.01463 3.08370 3.34537 3.44755 3.55621 3.63522 3.78123 3.94863 3.99641 4.03696 4.16632 4.22675 4.30277 4.33344 4.35477 4.53004 4.54576 4.57467 4.75297 4.79323 4.82089 4.90421 4.91058 5.03640 5.10837 5.17039 5.18066 5.26078 5.43870 5.60892 6.02982 6.21621 6.34325 6.56612 7.08633 7.31183 7.57225 8.76188 Molecular weight = 340.14amu Principal moments of inertia in cm(-1) A = 0.021805 B = 0.001788 C = 0.001739 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1283.811509 B =15656.703332 C =16095.672745 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C 0.171 3.829 3 H 0.128 0.872 4 N -0.676 5.676 5 C 0.079 3.921 6 H 0.105 0.895 7 C -0.138 4.138 8 C 0.108 3.892 9 H 0.074 0.926 10 N -0.692 5.692 11 C 0.536 3.464 12 O -0.567 6.567 13 C -0.128 4.128 14 S -0.156 6.156 15 C -0.544 4.544 16 H 0.085 0.915 17 C 0.012 3.988 18 N -0.912 5.912 19 Si 0.998 3.002 20 H -0.268 1.268 21 H -0.280 1.280 22 H -0.257 1.257 23 C -0.131 4.131 24 C 0.203 3.797 25 N -0.320 5.320 26 N -0.117 5.117 27 N -0.116 5.116 28 N -0.300 5.300 29 C 0.061 3.939 30 H 0.095 0.905 31 H 0.060 0.940 32 H 0.072 0.928 33 H 0.360 0.640 34 H 0.064 0.936 35 H 0.086 0.914 36 H 0.418 0.582 37 H 0.111 0.889 38 H 0.113 0.887 39 H 0.270 0.730 40 H 0.105 0.895 41 H 0.094 0.906 42 H 0.123 0.877 43 H 0.130 0.870 44 H 0.115 0.885 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.745 -9.108 23.223 28.481 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.233 4.233 2 C 0.057 3.943 3 H 0.146 0.854 4 N -0.309 5.309 5 C -0.030 4.030 6 H 0.123 0.877 7 C -0.178 4.178 8 C 0.002 3.998 9 H 0.092 0.908 10 N -0.345 5.345 11 C 0.322 3.678 12 O -0.445 6.445 13 C -0.279 4.279 14 S 0.071 5.929 15 C -0.692 4.692 16 H 0.103 0.897 17 C -0.193 4.193 18 N -0.548 5.548 19 Si 0.820 3.180 20 H -0.193 1.193 21 H -0.206 1.206 22 H -0.180 1.180 23 C -0.169 4.169 24 C -0.076 4.076 25 N -0.170 5.170 26 N -0.111 5.111 27 N -0.103 5.103 28 N -0.102 5.102 29 C -0.078 4.078 30 H 0.114 0.886 31 H 0.079 0.921 32 H 0.091 0.909 33 H 0.182 0.818 34 H 0.082 0.918 35 H 0.104 0.896 36 H 0.255 0.745 37 H 0.129 0.871 38 H 0.131 0.869 39 H 0.079 0.921 40 H 0.123 0.877 41 H 0.112 0.888 42 H 0.142 0.858 43 H 0.148 0.852 44 H 0.134 0.866 Dipole moment (debyes) X Y Z Total from point charges -10.881 -10.812 23.484 28.050 hybrid contribution -2.299 2.108 -0.467 3.154 sum -13.181 -8.704 23.017 27.916 Atomic orbital electron populations 1.22479 0.92546 1.03623 1.04695 1.20149 0.94610 0.96555 0.82936 0.85419 1.60249 1.58150 1.09914 1.02545 1.23069 0.96481 0.95501 0.87932 0.87722 1.23528 0.98224 1.01822 0.94213 1.21748 0.97950 0.85270 0.94834 0.90760 1.45366 1.22070 1.24072 1.43032 1.20088 0.84567 0.84673 0.78500 1.90705 1.22645 1.70424 1.60763 1.23365 1.03866 0.97571 1.03121 1.85656 1.27253 1.28143 1.51872 1.23207 1.06741 1.09356 1.29872 0.89707 1.26135 0.96084 1.01909 0.95168 1.70184 1.17344 1.38406 1.28909 0.84957 0.78686 0.76931 0.77430 1.19310 1.20581 1.18049 1.23512 0.99356 0.99278 0.94760 1.26525 0.98211 0.89735 0.93177 1.74854 1.18839 1.13754 1.09550 1.78592 1.13141 1.16671 1.02682 1.78789 1.19541 0.92760 1.19161 1.48748 1.38709 1.11533 1.11219 1.22979 1.07295 0.69972 1.07599 0.88628 0.92136 0.90914 0.81830 0.91753 0.89551 0.74466 0.87091 0.86880 0.92076 0.87661 0.88774 0.85839 0.85197 0.86614 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -0.67 9.13 71.98 0.66 -0.01 16 2 C 0.17 1.16 2.82 44.17 0.12 1.29 16 3 H 0.13 0.24 6.55 -2.39 -0.02 0.23 16 4 N -0.68 -6.28 6.29 -470.62 -2.96 -9.24 16 5 C 0.08 0.64 3.71 45.44 0.17 0.81 16 6 H 0.11 0.38 7.49 -2.39 -0.02 0.36 16 7 C -0.14 -2.12 7.68 31.12 0.24 -1.88 16 8 C 0.11 2.02 4.32 45.52 0.20 2.22 16 9 H 0.07 1.92 7.46 -2.39 -0.02 1.90 16 10 N -0.69 -14.21 5.26 -440.05 -2.32 -16.53 16 11 C 0.54 18.04 7.85 87.66 0.69 18.72 16 12 O -0.57 -25.25 15.46 -3.04 -0.05 -25.30 16 13 C -0.13 -4.65 6.16 71.24 0.44 -4.21 16 14 S -0.16 -8.40 20.57 -56.49 -1.16 -9.56 16 15 C -0.54 -30.02 9.50 67.96 0.65 -29.38 16 16 H 0.08 4.29 7.80 -2.91 -0.02 4.27 16 17 C 0.01 0.65 5.49 84.86 0.47 1.12 16 18 N -0.91 -55.13 13.22 21.65 0.29 -54.85 16 19 Si 1.00 42.30 29.55 68.60 2.03 44.32 16 20 H -0.27 -10.87 7.11 99.48 0.71 -10.17 16 21 H -0.28 -11.70 7.11 99.48 0.71 -10.99 16 22 H -0.26 -10.11 7.11 99.48 0.71 -9.40 16 23 C -0.13 -1.33 7.40 31.12 0.23 -1.09 16 24 C 0.20 2.96 6.97 138.13 0.96 3.92 16 25 N -0.32 -7.25 12.36 -50.45 -0.62 -7.87 16 26 N -0.12 -3.06 13.43 37.01 0.50 -2.56 16 27 N -0.12 -2.48 13.29 37.02 0.49 -1.99 16 28 N -0.30 -3.97 3.75 -359.63 -1.35 -5.32 16 29 C 0.06 0.09 11.21 127.77 1.43 1.52 16 30 H 0.09 0.04 7.74 -2.39 -0.02 0.03 16 31 H 0.06 0.43 8.13 -2.39 -0.02 0.41 16 32 H 0.07 0.20 8.14 -2.38 -0.02 0.18 16 33 H 0.36 3.28 8.29 -89.69 -0.74 2.54 16 34 H 0.06 1.07 8.14 -2.39 -0.02 1.06 16 35 H 0.09 1.54 8.14 -2.38 -0.02 1.52 16 36 H 0.42 5.17 8.70 -92.70 -0.81 4.37 16 37 H 0.11 3.57 8.14 -2.39 -0.02 3.55 16 38 H 0.11 3.57 8.14 -2.40 -0.02 3.55 16 39 H 0.27 15.19 8.31 -92.71 -0.77 14.42 16 40 H 0.11 1.09 8.14 -2.39 -0.02 1.07 16 41 H 0.09 0.69 8.14 -2.39 -0.02 0.67 16 42 H 0.12 -0.39 8.14 -2.39 -0.02 -0.41 16 43 H 0.13 -0.42 7.01 -2.39 -0.02 -0.44 16 44 H 0.12 0.06 8.14 -2.38 -0.02 0.05 16 Total: -1.00 -87.69 387.51 0.59 -87.10 By element: Atomic # 1 Polarization: 9.27 SS G_CDS: -0.50 Total: 8.76 kcal Atomic # 6 Polarization: -13.22 SS G_CDS: 6.25 Total: -6.97 kcal Atomic # 7 Polarization: -92.38 SS G_CDS: -5.97 Total: -98.35 kcal Atomic # 8 Polarization: -25.25 SS G_CDS: -0.05 Total: -25.30 kcal Atomic # 14 Polarization: 42.30 SS G_CDS: 2.03 Total: 44.32 kcal Atomic # 16 Polarization: -8.40 SS G_CDS: -1.16 Total: -9.56 kcal Total: -87.69 0.59 -87.10 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001752613908.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 163.539 kcal (2) G-P(sol) polarization free energy of solvation -87.693 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 75.846 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.594 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -87.099 kcal (6) G-S(sol) free energy of system = (1) + (5) 76.440 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds