Wall clock time and date at job start Sat Apr 11 2020 06:00:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09001 * 109.47222 * 2 1 4 4 N 1.46902 * 109.46840 * 119.99986 * 2 1 3 5 5 C 1.46905 * 110.99767 * 274.99852 * 4 2 1 6 6 H 1.08994 * 112.85103 * 23.80543 * 5 4 2 7 7 C 1.53775 * 113.61119 * 155.00319 * 5 4 2 8 8 C 1.53780 * 87.08202 * 139.98022 * 7 5 4 9 9 H 1.09007 * 113.61673 * 219.93645 * 8 7 5 10 10 N 1.46499 * 113.61669 * 89.11383 * 8 7 5 11 11 C 1.34778 * 120.00278 * 156.52743 * 10 8 7 12 12 O 1.21278 * 119.99748 * 0.02562 * 11 10 8 13 13 C 1.50697 * 120.00209 * 180.02562 * 11 10 8 14 14 S 1.80999 * 109.47181 * 180.02562 * 13 11 10 15 15 C 1.76199 * 99.99825 * 179.97438 * 14 13 11 16 16 H 1.08002 * 120.00405 * 0.02562 * 15 14 13 17 17 C 1.38803 * 119.99855 * 179.72221 * 15 14 13 18 18 N 1.31634 * 119.99756 * 0.27728 * 17 15 14 19 19 Si 1.86803 * 120.00005 * 180.27923 * 17 15 14 20 20 H 1.48496 * 109.47187 * 359.97438 * 19 17 15 21 21 H 1.48494 * 109.47141 * 119.99999 * 19 17 15 22 22 H 1.48498 * 109.47018 * 240.00046 * 19 17 15 23 23 C 1.53784 * 87.17196 * 334.52443 * 8 7 5 24 24 C 1.50704 * 109.47324 * 239.99992 * 2 1 3 25 25 N 1.31071 * 126.65809 * 285.02674 * 24 2 1 26 26 N 1.28836 * 107.98790 * 179.97438 * 25 24 2 27 27 N 1.28731 * 109.40044 * 0.02562 * 26 25 24 28 28 N 1.29018 * 108.81012 * 359.74536 * 27 26 25 29 29 C 1.46503 * 126.44417 * 180.24986 * 28 27 26 30 30 H 1.09004 * 109.47193 * 59.99961 * 1 2 3 31 31 H 1.09001 * 109.47222 * 180.02562 * 1 2 3 32 32 H 1.09007 * 109.47371 * 300.00228 * 1 2 3 33 33 H 1.00892 * 111.00036 * 38.95290 * 4 2 1 34 34 H 1.09003 * 113.61890 * 25.43490 * 7 5 4 35 35 H 1.08996 * 113.69198 * 254.53769 * 7 5 4 36 36 H 0.97000 * 119.99972 * 336.53099 * 10 8 7 37 37 H 1.08999 * 109.47278 * 59.99800 * 13 11 10 38 38 H 1.09002 * 109.46837 * 300.00183 * 13 11 10 39 39 H 0.97000 * 119.99219 * 179.97438 * 18 17 15 40 40 H 1.09000 * 113.61421 * 140.02571 * 23 8 7 41 41 H 1.09008 * 113.61091 * 270.92482 * 23 8 7 42 42 H 1.09005 * 109.46675 * 270.17929 * 29 28 27 43 43 H 1.09001 * 109.46503 * 30.17104 * 29 28 27 44 44 H 1.08994 * 109.47095 * 150.17366 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0196 -0.6925 1.1995 5 6 2.0823 0.2227 2.3469 6 1 1.4067 1.0722 2.2482 7 6 1.9844 -0.4876 3.7073 8 6 3.0598 0.4913 4.2073 9 1 3.8016 0.0295 4.8590 10 7 2.5122 1.7331 4.7590 11 6 3.2342 2.4560 5.6380 12 8 4.3375 2.0788 5.9718 13 6 2.6707 3.7331 6.2059 14 16 3.8694 4.4668 7.3464 15 6 2.9778 5.9022 7.8456 16 1 1.9919 6.0913 7.4472 17 6 3.5399 6.7867 8.7558 18 7 4.7413 6.5560 9.2417 19 14 2.5914 8.3044 9.2910 20 1 1.2753 8.3335 8.6039 21 1 2.3824 8.2648 10.7606 22 1 3.3629 9.5219 8.9334 23 6 3.5177 0.6163 2.7445 24 6 2.0324 -0.7104 -1.2305 25 7 2.0362 -2.0042 -1.4404 26 7 2.5434 -2.2168 -2.6054 27 7 2.8637 -1.0922 -3.1440 28 7 2.5595 -0.1392 -2.3293 29 6 2.7541 1.2950 -2.5562 30 1 -0.3634 0.5139 -0.8900 31 1 -0.3634 -1.0277 0.0005 32 1 -0.3634 0.5139 0.8900 33 1 1.4495 -1.4978 1.4100 34 1 2.3163 -1.5256 3.6829 35 1 1.0190 -0.3633 4.1977 36 1 1.6300 2.0349 4.4918 37 1 1.7459 3.5161 6.7403 38 1 2.4662 4.4322 5.3950 39 1 5.1341 7.1744 9.8775 40 1 3.7888 1.6322 2.4572 41 1 4.2680 -0.1205 2.4574 42 1 3.7396 1.5895 -2.1952 43 1 2.6795 1.5074 -3.6227 44 1 1.9882 1.8549 -2.0197 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001752613909.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:00:06 Heat of formation + Delta-G solvation = 106.514973 kcal Electronic energy + Delta-G solvation = -26150.193676 eV Core-core repulsion = 22267.522437 eV Total energy + Delta-G solvation = -3882.671239 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.142 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -44.51008 -40.31481 -38.51672 -36.69395 -35.95058 -33.30104 -32.47267 -32.10817 -29.92382 -28.89315 -28.76394 -26.06762 -25.55799 -25.23150 -24.02286 -23.16690 -21.59197 -20.89774 -19.55238 -17.97234 -17.91053 -17.63405 -16.81231 -16.46167 -16.15821 -15.81964 -15.14945 -14.88425 -14.84860 -14.51564 -14.43341 -14.22242 -14.02753 -13.69031 -13.38186 -13.20583 -12.85645 -12.79405 -12.63012 -12.59511 -12.53446 -12.12985 -11.96602 -11.78056 -11.41487 -11.24800 -11.11211 -11.06750 -10.87770 -10.81235 -10.75923 -10.39161 -9.85091 -9.47524 -9.13377 -9.10479 -8.89508 -8.28157 -6.54930 -6.26265 -3.97063 0.85178 1.54976 1.92867 2.94940 3.00064 3.17790 3.24124 3.27965 3.28991 3.56557 3.63215 3.84442 4.07277 4.15699 4.17032 4.24927 4.31269 4.36933 4.60727 4.64449 4.67881 4.70402 4.85521 4.99046 5.07081 5.09128 5.09795 5.28063 5.36294 5.42702 5.46787 5.51758 5.59413 5.71041 5.74783 5.81330 5.84054 5.95137 6.06878 6.39908 6.66535 6.78363 7.55195 7.62609 8.28473 8.30696 8.54586 9.19207 10.81170 Molecular weight = 340.14amu Principal moments of inertia in cm(-1) A = 0.021610 B = 0.001793 C = 0.001744 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1295.399608 B =15609.547168 C =16050.115485 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C 0.168 3.832 3 H 0.103 0.897 4 N -0.662 5.662 5 C 0.058 3.942 6 H 0.078 0.922 7 C -0.147 4.147 8 C 0.125 3.875 9 H 0.106 0.894 10 N -0.723 5.723 11 C 0.534 3.466 12 O -0.513 6.513 13 C -0.153 4.153 14 S -0.060 6.060 15 C -0.536 4.536 16 H 0.073 0.927 17 C 0.073 3.927 18 N -0.867 5.867 19 Si 0.919 3.081 20 H -0.272 1.272 21 H -0.280 1.280 22 H -0.280 1.280 23 C -0.138 4.138 24 C 0.200 3.800 25 N -0.290 5.290 26 N -0.077 5.077 27 N -0.099 5.099 28 N -0.308 5.308 29 C 0.076 3.924 30 H 0.064 0.936 31 H 0.073 0.927 32 H 0.076 0.924 33 H 0.357 0.643 34 H 0.102 0.898 35 H 0.075 0.925 36 H 0.396 0.604 37 H 0.090 0.910 38 H 0.089 0.911 39 H 0.268 0.732 40 H 0.070 0.930 41 H 0.097 0.903 42 H 0.100 0.900 43 H 0.108 0.892 44 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.876 -10.975 -21.867 26.775 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.240 4.240 2 C 0.054 3.946 3 H 0.121 0.879 4 N -0.295 5.295 5 C -0.051 4.051 6 H 0.096 0.904 7 C -0.185 4.185 8 C 0.018 3.982 9 H 0.124 0.876 10 N -0.376 5.376 11 C 0.320 3.680 12 O -0.387 6.387 13 C -0.304 4.304 14 S 0.167 5.833 15 C -0.684 4.684 16 H 0.091 0.909 17 C -0.136 4.136 18 N -0.502 5.502 19 Si 0.745 3.255 20 H -0.196 1.196 21 H -0.205 1.205 22 H -0.206 1.206 23 C -0.178 4.178 24 C -0.079 4.079 25 N -0.139 5.139 26 N -0.071 5.071 27 N -0.084 5.084 28 N -0.110 5.110 29 C -0.065 4.065 30 H 0.083 0.917 31 H 0.092 0.908 32 H 0.095 0.905 33 H 0.178 0.822 34 H 0.121 0.879 35 H 0.094 0.906 36 H 0.230 0.770 37 H 0.108 0.892 38 H 0.107 0.893 39 H 0.078 0.922 40 H 0.088 0.912 41 H 0.115 0.885 42 H 0.119 0.881 43 H 0.127 0.873 44 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges -7.938 -12.640 -22.118 26.683 hybrid contribution -3.284 2.639 0.285 4.222 sum -11.222 -10.001 -21.833 26.508 Atomic orbital electron populations 1.22526 0.93988 1.04059 1.03403 1.19909 0.93646 0.96196 0.84840 0.87888 1.60390 1.57413 1.09524 1.02165 1.23271 0.98406 0.95047 0.88382 0.90371 1.23588 1.00020 1.00089 0.94843 1.21589 0.96599 0.85289 0.94710 0.87621 1.45728 1.20775 1.24339 1.46799 1.20330 0.85201 0.84786 0.77652 1.90711 1.19647 1.69896 1.58434 1.23531 1.05803 0.96707 1.04372 1.85436 1.20858 1.26117 1.50895 1.22902 1.05293 1.09206 1.31011 0.90884 1.25004 0.95156 0.98224 0.95247 1.70029 1.14433 1.36641 1.29089 0.86113 0.79516 0.81354 0.78481 1.19642 1.20540 1.20564 1.23622 0.96317 1.02354 0.95491 1.25980 0.99212 0.90386 0.92363 1.74962 1.17742 1.11562 1.09607 1.78634 1.11434 1.15408 1.01645 1.78889 1.18967 0.92339 1.18241 1.48393 1.40376 1.10361 1.11910 1.22435 1.05284 0.72636 1.06173 0.91667 0.90800 0.90510 0.82173 0.87925 0.90599 0.76973 0.89209 0.89274 0.92198 0.91166 0.88488 0.88106 0.87318 0.87753 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -0.67 9.13 37.16 0.34 -0.33 16 2 C 0.17 0.86 2.73 -68.86 -0.19 0.67 16 3 H 0.10 0.36 6.90 -51.93 -0.36 0.00 16 4 N -0.66 -4.06 6.29 -99.95 -0.63 -4.69 16 5 C 0.06 0.35 3.73 -66.76 -0.25 0.10 16 6 H 0.08 0.38 7.49 -51.93 -0.39 -0.01 16 7 C -0.15 -0.96 7.39 -25.92 -0.19 -1.16 16 8 C 0.13 1.26 4.30 -67.12 -0.29 0.98 16 9 H 0.11 1.33 7.50 -51.93 -0.39 0.94 16 10 N -0.72 -8.34 5.26 -53.02 -0.28 -8.62 16 11 C 0.53 9.24 7.85 -10.99 -0.09 9.15 16 12 O -0.51 -11.14 15.48 5.56 0.09 -11.05 16 13 C -0.15 -2.91 6.16 36.00 0.22 -2.68 16 14 S -0.06 -1.57 20.57 -107.50 -2.21 -3.78 16 15 C -0.54 -14.87 9.50 30.94 0.29 -14.58 16 16 H 0.07 1.91 7.80 -52.49 -0.41 1.50 16 17 C 0.07 2.04 5.49 -17.43 -0.10 1.95 16 18 N -0.87 -25.69 13.22 55.49 0.73 -24.96 16 19 Si 0.92 20.91 29.55 -169.99 -5.02 15.89 16 20 H -0.27 -5.97 7.11 56.52 0.40 -5.57 16 21 H -0.28 -6.28 7.11 56.52 0.40 -5.88 16 22 H -0.28 -6.27 7.11 56.52 0.40 -5.87 16 23 C -0.14 -1.21 7.70 -25.77 -0.20 -1.40 16 24 C 0.20 1.63 6.97 -155.43 -1.08 0.55 16 25 N -0.29 -3.31 12.36 32.70 0.40 -2.91 16 26 N -0.08 -0.99 13.43 60.35 0.81 -0.18 16 27 N -0.10 -1.07 13.29 60.35 0.80 -0.27 16 28 N -0.31 -2.30 3.75 -65.02 -0.24 -2.55 16 29 C 0.08 0.17 11.04 59.85 0.66 0.83 16 30 H 0.06 0.21 8.14 -51.93 -0.42 -0.22 16 31 H 0.07 0.35 8.13 -51.93 -0.42 -0.07 16 32 H 0.08 0.21 7.74 -51.92 -0.40 -0.19 16 33 H 0.36 2.09 8.28 -39.30 -0.33 1.77 16 34 H 0.10 0.65 8.14 -51.93 -0.42 0.22 16 35 H 0.08 0.44 8.14 -51.93 -0.42 0.02 16 36 H 0.40 3.33 8.70 -40.82 -0.36 2.98 16 37 H 0.09 1.56 8.14 -51.92 -0.42 1.14 16 38 H 0.09 1.54 8.14 -51.91 -0.42 1.11 16 39 H 0.27 7.37 8.31 -40.82 -0.34 7.03 16 40 H 0.07 0.68 8.14 -51.93 -0.42 0.25 16 41 H 0.10 0.91 8.14 -51.92 -0.42 0.49 16 42 H 0.10 0.14 8.14 -51.93 -0.42 -0.28 16 43 H 0.11 0.11 8.14 -51.93 -0.42 -0.32 16 44 H 0.10 -0.03 7.41 -51.93 -0.38 -0.42 16 LS Contribution 388.06 15.07 5.85 5.85 Total: -1.00 -37.63 388.06 -6.94 -44.57 By element: Atomic # 1 Polarization: 5.00 SS G_CDS: -6.38 Total: -1.37 kcal Atomic # 6 Polarization: -5.07 SS G_CDS: -0.86 Total: -5.93 kcal Atomic # 7 Polarization: -45.77 SS G_CDS: 1.60 Total: -44.17 kcal Atomic # 8 Polarization: -11.14 SS G_CDS: 0.09 Total: -11.05 kcal Atomic # 14 Polarization: 20.91 SS G_CDS: -5.02 Total: 15.89 kcal Atomic # 16 Polarization: -1.57 SS G_CDS: -2.21 Total: -3.78 kcal Total LS contribution 5.85 Total: 5.85 kcal Total: -37.63 -6.94 -44.57 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001752613909.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 151.089 kcal (2) G-P(sol) polarization free energy of solvation -37.632 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 113.457 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.942 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.574 kcal (6) G-S(sol) free energy of system = (1) + (5) 106.515 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds