Wall clock time and date at job start Sat Apr 11 2020 06:00:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09001 * 109.47222 * 2 1 4 4 N 1.46902 * 109.46840 * 119.99986 * 2 1 3 5 5 C 1.46905 * 110.99767 * 274.99852 * 4 2 1 6 6 H 1.08994 * 112.85103 * 23.80543 * 5 4 2 7 7 C 1.53775 * 113.61119 * 155.00319 * 5 4 2 8 8 C 1.53780 * 87.08202 * 139.98022 * 7 5 4 9 9 H 1.09007 * 113.61673 * 219.93645 * 8 7 5 10 10 N 1.46499 * 113.61669 * 89.11383 * 8 7 5 11 11 C 1.34778 * 120.00278 * 156.52743 * 10 8 7 12 12 O 1.21278 * 119.99748 * 0.02562 * 11 10 8 13 13 C 1.50697 * 120.00209 * 180.02562 * 11 10 8 14 14 S 1.80999 * 109.47181 * 180.02562 * 13 11 10 15 15 C 1.76199 * 99.99825 * 179.97438 * 14 13 11 16 16 H 1.08002 * 120.00405 * 0.02562 * 15 14 13 17 17 C 1.38803 * 119.99855 * 179.72221 * 15 14 13 18 18 N 1.31634 * 119.99756 * 0.27728 * 17 15 14 19 19 Si 1.86803 * 120.00005 * 180.27923 * 17 15 14 20 20 H 1.48496 * 109.47187 * 359.97438 * 19 17 15 21 21 H 1.48494 * 109.47141 * 119.99999 * 19 17 15 22 22 H 1.48498 * 109.47018 * 240.00046 * 19 17 15 23 23 C 1.53784 * 87.17196 * 334.52443 * 8 7 5 24 24 C 1.50704 * 109.47324 * 239.99992 * 2 1 3 25 25 N 1.31071 * 126.65809 * 285.02674 * 24 2 1 26 26 N 1.28836 * 107.98790 * 179.97438 * 25 24 2 27 27 N 1.28731 * 109.40044 * 0.02562 * 26 25 24 28 28 N 1.29018 * 108.81012 * 359.74536 * 27 26 25 29 29 C 1.46503 * 126.44417 * 180.24986 * 28 27 26 30 30 H 1.09004 * 109.47193 * 59.99961 * 1 2 3 31 31 H 1.09001 * 109.47222 * 180.02562 * 1 2 3 32 32 H 1.09007 * 109.47371 * 300.00228 * 1 2 3 33 33 H 1.00892 * 111.00036 * 38.95290 * 4 2 1 34 34 H 1.09003 * 113.61890 * 25.43490 * 7 5 4 35 35 H 1.08996 * 113.69198 * 254.53769 * 7 5 4 36 36 H 0.97000 * 119.99972 * 336.53099 * 10 8 7 37 37 H 1.08999 * 109.47278 * 59.99800 * 13 11 10 38 38 H 1.09002 * 109.46837 * 300.00183 * 13 11 10 39 39 H 0.97000 * 119.99219 * 179.97438 * 18 17 15 40 40 H 1.09000 * 113.61421 * 140.02571 * 23 8 7 41 41 H 1.09008 * 113.61091 * 270.92482 * 23 8 7 42 42 H 1.09005 * 109.46675 * 270.17929 * 29 28 27 43 43 H 1.09001 * 109.46503 * 30.17104 * 29 28 27 44 44 H 1.08994 * 109.47095 * 150.17366 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0196 -0.6925 1.1995 5 6 2.0823 0.2227 2.3469 6 1 1.4067 1.0722 2.2482 7 6 1.9844 -0.4876 3.7073 8 6 3.0598 0.4913 4.2073 9 1 3.8016 0.0295 4.8590 10 7 2.5122 1.7331 4.7590 11 6 3.2342 2.4560 5.6380 12 8 4.3375 2.0788 5.9718 13 6 2.6707 3.7331 6.2059 14 16 3.8694 4.4668 7.3464 15 6 2.9778 5.9022 7.8456 16 1 1.9919 6.0913 7.4472 17 6 3.5399 6.7867 8.7558 18 7 4.7413 6.5560 9.2417 19 14 2.5914 8.3044 9.2910 20 1 1.2753 8.3335 8.6039 21 1 2.3824 8.2648 10.7606 22 1 3.3629 9.5219 8.9334 23 6 3.5177 0.6163 2.7445 24 6 2.0324 -0.7104 -1.2305 25 7 2.0362 -2.0042 -1.4404 26 7 2.5434 -2.2168 -2.6054 27 7 2.8637 -1.0922 -3.1440 28 7 2.5595 -0.1392 -2.3293 29 6 2.7541 1.2950 -2.5562 30 1 -0.3634 0.5139 -0.8900 31 1 -0.3634 -1.0277 0.0005 32 1 -0.3634 0.5139 0.8900 33 1 1.4495 -1.4978 1.4100 34 1 2.3163 -1.5256 3.6829 35 1 1.0190 -0.3633 4.1977 36 1 1.6300 2.0349 4.4918 37 1 1.7459 3.5161 6.7403 38 1 2.4662 4.4322 5.3950 39 1 5.1341 7.1744 9.8775 40 1 3.7888 1.6322 2.4572 41 1 4.2680 -0.1205 2.4574 42 1 3.7396 1.5895 -2.1952 43 1 2.6795 1.5074 -3.6227 44 1 1.9882 1.8549 -2.0197 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001752613909.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:00:05 Heat of formation + Delta-G solvation = 76.179557 kcal Electronic energy + Delta-G solvation = -26151.509118 eV Core-core repulsion = 22267.522437 eV Total energy + Delta-G solvation = -3883.986681 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.142 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -45.17881 -41.22073 -39.56795 -37.32477 -36.52654 -34.57363 -34.34081 -32.87447 -30.83789 -29.76764 -29.21631 -27.65364 -26.69042 -25.77480 -24.71745 -23.83550 -22.17748 -22.00395 -20.36296 -19.81251 -18.48833 -18.23761 -17.94591 -17.15921 -17.02159 -16.86418 -16.71054 -16.30622 -15.85547 -15.47316 -15.14384 -14.90865 -14.62478 -14.56563 -14.46758 -14.01315 -13.87535 -13.70703 -13.30218 -13.26141 -13.15101 -13.13941 -12.98382 -12.89080 -12.65215 -12.53033 -12.41586 -12.06304 -11.81717 -11.70202 -11.51914 -11.46196 -11.14552 -11.04648 -10.92018 -10.23747 -10.03583 -9.48329 -8.64604 -8.33308 -6.10918 0.22933 1.11361 1.20621 1.29128 1.42694 1.49436 1.59621 1.64189 2.26528 2.31303 2.83678 3.01172 3.07831 3.34365 3.44630 3.55710 3.63121 3.82885 3.94223 3.99216 4.03932 4.16233 4.22795 4.28290 4.33712 4.35433 4.53140 4.54562 4.56009 4.75276 4.78426 4.82601 4.90324 4.90766 5.03561 5.10726 5.16999 5.18089 5.26078 5.44016 5.60931 6.02994 6.21680 6.34759 6.56711 7.08417 7.31260 7.57123 8.76017 Molecular weight = 340.14amu Principal moments of inertia in cm(-1) A = 0.021610 B = 0.001793 C = 0.001744 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1295.399608 B =15609.547168 C =16050.115485 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C 0.171 3.829 3 H 0.128 0.872 4 N -0.675 5.675 5 C 0.080 3.920 6 H 0.105 0.895 7 C -0.130 4.130 8 C 0.109 3.891 9 H 0.073 0.927 10 N -0.692 5.692 11 C 0.536 3.464 12 O -0.567 6.567 13 C -0.128 4.128 14 S -0.157 6.157 15 C -0.543 4.543 16 H 0.085 0.915 17 C 0.011 3.989 18 N -0.912 5.912 19 Si 0.999 3.001 20 H -0.254 1.254 21 H -0.276 1.276 22 H -0.275 1.275 23 C -0.139 4.139 24 C 0.203 3.797 25 N -0.320 5.320 26 N -0.117 5.117 27 N -0.116 5.116 28 N -0.300 5.300 29 C 0.060 3.940 30 H 0.072 0.928 31 H 0.060 0.940 32 H 0.095 0.905 33 H 0.360 0.640 34 H 0.105 0.895 35 H 0.095 0.905 36 H 0.418 0.582 37 H 0.111 0.889 38 H 0.113 0.887 39 H 0.270 0.730 40 H 0.063 0.937 41 H 0.085 0.915 42 H 0.111 0.889 43 H 0.120 0.880 44 H 0.137 0.863 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.081 -9.381 -22.891 28.465 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.234 4.234 2 C 0.057 3.943 3 H 0.146 0.854 4 N -0.308 5.308 5 C -0.029 4.029 6 H 0.123 0.877 7 C -0.168 4.168 8 C 0.002 3.998 9 H 0.092 0.908 10 N -0.346 5.346 11 C 0.322 3.678 12 O -0.445 6.445 13 C -0.279 4.279 14 S 0.071 5.929 15 C -0.691 4.691 16 H 0.103 0.897 17 C -0.193 4.193 18 N -0.549 5.549 19 Si 0.821 3.179 20 H -0.178 1.178 21 H -0.202 1.202 22 H -0.201 1.201 23 C -0.178 4.178 24 C -0.076 4.076 25 N -0.170 5.170 26 N -0.111 5.111 27 N -0.102 5.102 28 N -0.102 5.102 29 C -0.079 4.079 30 H 0.091 0.909 31 H 0.079 0.921 32 H 0.114 0.886 33 H 0.182 0.818 34 H 0.124 0.876 35 H 0.113 0.887 36 H 0.255 0.745 37 H 0.129 0.871 38 H 0.131 0.869 39 H 0.079 0.921 40 H 0.081 0.919 41 H 0.104 0.896 42 H 0.130 0.870 43 H 0.139 0.861 44 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges -11.199 -11.058 -23.196 28.031 hybrid contribution -2.277 2.089 0.512 3.132 sum -13.476 -8.969 -22.684 27.868 Atomic orbital electron populations 1.22492 0.92521 1.03667 1.04726 1.20143 0.94604 0.96588 0.82948 0.85444 1.60229 1.58168 1.09914 1.02538 1.23115 0.96416 0.95482 0.87933 0.87728 1.23498 0.99345 0.99250 0.94721 1.21748 0.97953 0.85263 0.94798 0.90821 1.45370 1.20867 1.23765 1.44550 1.20086 0.84764 0.84640 0.78343 1.90704 1.22057 1.71068 1.60698 1.23365 1.03806 0.97511 1.03241 1.85658 1.25578 1.27589 1.54116 1.23242 1.05583 1.09213 1.31045 0.89698 1.26141 0.96106 1.01878 0.95204 1.70199 1.16498 1.38174 1.30007 0.84905 0.78474 0.76544 0.78022 1.17787 1.20158 1.20077 1.23576 0.98222 1.01738 0.94302 1.26533 0.98175 0.89742 0.93181 1.74853 1.18777 1.13764 1.09587 1.78590 1.13164 1.16670 1.02667 1.78781 1.19456 0.92770 1.19224 1.48749 1.38869 1.11522 1.11097 1.22976 1.07106 0.69976 1.07802 0.90858 0.92116 0.88603 0.81813 0.87634 0.88689 0.74462 0.87079 0.86890 0.92080 0.91866 0.89597 0.87035 0.86124 0.84502 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -0.65 9.13 71.98 0.66 0.01 16 2 C 0.17 1.17 2.73 44.17 0.12 1.29 16 3 H 0.13 0.27 6.90 -2.39 -0.02 0.25 16 4 N -0.68 -6.34 6.29 -470.14 -2.96 -9.30 16 5 C 0.08 0.66 3.73 45.53 0.17 0.83 16 6 H 0.11 0.39 7.49 -2.39 -0.02 0.37 16 7 C -0.13 -1.31 7.39 31.12 0.23 -1.08 16 8 C 0.11 2.03 4.30 45.52 0.20 2.23 16 9 H 0.07 1.90 7.50 -2.38 -0.02 1.88 16 10 N -0.69 -14.24 5.26 -440.03 -2.32 -16.56 16 11 C 0.54 18.05 7.85 87.66 0.69 18.74 16 12 O -0.57 -25.27 15.48 -3.02 -0.05 -25.31 16 13 C -0.13 -4.65 6.16 71.23 0.44 -4.21 16 14 S -0.16 -8.41 20.57 -56.49 -1.16 -9.57 16 15 C -0.54 -29.98 9.50 67.96 0.65 -29.33 16 16 H 0.08 4.31 7.80 -2.91 -0.02 4.28 16 17 C 0.01 0.63 5.49 84.86 0.47 1.09 16 18 N -0.91 -55.16 13.22 21.65 0.29 -54.87 16 19 Si 1.00 42.34 29.55 68.60 2.03 44.37 16 20 H -0.25 -9.94 7.11 99.48 0.71 -9.23 16 21 H -0.28 -11.44 7.11 99.48 0.71 -10.74 16 22 H -0.28 -11.37 7.11 99.48 0.71 -10.66 16 23 C -0.14 -2.17 7.70 31.21 0.24 -1.93 16 24 C 0.20 2.97 6.97 138.14 0.96 3.94 16 25 N -0.32 -7.25 12.36 -50.45 -0.62 -7.88 16 26 N -0.12 -3.06 13.43 37.01 0.50 -2.56 16 27 N -0.12 -2.49 13.29 37.02 0.49 -2.00 16 28 N -0.30 -4.00 3.75 -359.64 -1.35 -5.35 16 29 C 0.06 0.10 11.04 127.77 1.41 1.51 16 30 H 0.07 0.18 8.14 -2.38 -0.02 0.16 16 31 H 0.06 0.42 8.13 -2.39 -0.02 0.40 16 32 H 0.10 0.03 7.74 -2.38 -0.02 0.01 16 33 H 0.36 3.28 8.28 -89.70 -0.74 2.54 16 34 H 0.11 1.08 8.14 -2.39 -0.02 1.06 16 35 H 0.09 0.67 8.14 -2.39 -0.02 0.65 16 36 H 0.42 5.18 8.70 -92.71 -0.81 4.38 16 37 H 0.11 3.57 8.14 -2.39 -0.02 3.56 16 38 H 0.11 3.58 8.14 -2.39 -0.02 3.56 16 39 H 0.27 15.15 8.31 -92.71 -0.77 14.38 16 40 H 0.06 1.09 8.14 -2.39 -0.02 1.07 16 41 H 0.09 1.56 8.14 -2.38 -0.02 1.54 16 42 H 0.11 0.00 8.14 -2.38 -0.02 -0.02 16 43 H 0.12 -0.06 8.14 -2.39 -0.02 -0.08 16 44 H 0.14 -0.68 7.41 -2.39 -0.02 -0.69 16 Total: -1.00 -87.84 388.06 0.57 -87.28 By element: Atomic # 1 Polarization: 9.18 SS G_CDS: -0.51 Total: 8.68 kcal Atomic # 6 Polarization: -13.15 SS G_CDS: 6.23 Total: -6.92 kcal Atomic # 7 Polarization: -92.55 SS G_CDS: -5.97 Total: -98.52 kcal Atomic # 8 Polarization: -25.27 SS G_CDS: -0.05 Total: -25.31 kcal Atomic # 14 Polarization: 42.34 SS G_CDS: 2.03 Total: 44.37 kcal Atomic # 16 Polarization: -8.41 SS G_CDS: -1.16 Total: -9.57 kcal Total: -87.84 0.57 -87.28 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001752613909.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 163.455 kcal (2) G-P(sol) polarization free energy of solvation -87.844 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 75.611 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.569 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -87.275 kcal (6) G-S(sol) free energy of system = (1) + (5) 76.180 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds