Wall clock time and date at job start Sat Apr 11 2020 06:00:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09002 * 109.47153 * 2 1 4 4 N 1.46896 * 109.46848 * 240.00028 * 2 1 3 5 5 C 1.46901 * 110.99913 * 85.00348 * 4 2 1 6 6 H 1.09002 * 112.84891 * 334.66012 * 5 4 2 7 7 C 1.53779 * 113.61709 * 105.86238 * 5 4 2 8 8 C 1.53964 * 87.02076 * 139.95163 * 7 5 4 9 9 H 1.08995 * 113.53684 * 89.18806 * 8 7 5 10 10 N 1.46494 * 113.74073 * 220.05385 * 8 7 5 11 11 C 1.34771 * 120.00419 * 252.59727 * 10 8 7 12 12 O 1.21286 * 119.99910 * 359.97438 * 11 10 8 13 13 C 1.50695 * 120.00368 * 180.02562 * 11 10 8 14 14 S 1.81006 * 109.47282 * 179.97438 * 13 11 10 15 15 C 1.76200 * 100.00085 * 179.97438 * 14 13 11 16 16 H 1.08002 * 120.00084 * 0.02562 * 15 14 13 17 17 C 1.38795 * 120.00078 * 180.02562 * 15 14 13 18 18 N 1.31640 * 119.99748 * 359.97438 * 17 15 14 19 19 Si 1.86793 * 120.00339 * 180.02562 * 17 15 14 20 20 H 1.48504 * 109.47402 * 59.99689 * 19 17 15 21 21 H 1.48501 * 109.47650 * 179.97438 * 19 17 15 22 22 H 1.48501 * 109.47058 * 299.99948 * 19 17 15 23 23 C 1.53777 * 87.10885 * 334.63599 * 8 7 5 24 24 C 1.50701 * 109.47212 * 119.99998 * 2 1 3 25 25 N 1.31075 * 126.65646 * 74.68848 * 24 2 1 26 26 N 1.28840 * 107.98610 * 179.89360 * 25 24 2 27 27 N 1.28740 * 109.39821 * 0.37760 * 26 25 24 28 28 N 1.29011 * 108.80767 * 359.76248 * 27 26 25 29 29 C 1.46505 * 126.43738 * 179.97438 * 28 27 26 30 30 H 1.09002 * 109.47153 * 180.02562 * 1 2 3 31 31 H 1.08998 * 109.47533 * 299.99629 * 1 2 3 32 32 H 1.08996 * 109.47853 * 59.99972 * 1 2 3 33 33 H 1.00896 * 111.00728 * 321.04492 * 4 2 1 34 34 H 1.08999 * 113.61177 * 254.52255 * 7 5 4 35 35 H 1.09000 * 113.61330 * 25.42900 * 7 5 4 36 36 H 0.97001 * 120.00031 * 72.59938 * 10 8 7 37 37 H 1.09003 * 109.46936 * 299.99299 * 13 11 10 38 38 H 1.09005 * 109.47402 * 59.99967 * 13 11 10 39 39 H 0.96999 * 119.99413 * 180.02562 * 18 17 15 40 40 H 1.08999 * 113.61764 * 270.81508 * 23 8 7 41 41 H 1.09005 * 113.61320 * 139.91045 * 23 8 7 42 42 H 1.08997 * 109.47718 * 270.03216 * 29 28 27 43 43 H 1.09003 * 109.46650 * 30.03427 * 29 28 27 44 44 H 1.08995 * 109.46801 * 150.02688 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0196 -0.6925 -1.1994 5 6 2.0824 0.2226 -2.3468 6 1 1.3875 1.0580 -2.2605 7 6 3.5129 0.6471 -2.7187 8 6 3.0848 0.5099 -4.1913 9 1 2.6651 1.4246 -4.6096 10 7 4.1088 -0.0907 -5.0496 11 6 4.7800 0.6736 -5.9338 12 8 4.5359 1.8586 -6.0191 13 6 5.8330 0.0557 -6.8172 14 16 6.5469 1.3297 -7.8865 15 6 7.7122 0.3588 -8.7832 16 1 7.8035 -0.6982 -8.5812 17 6 8.5128 0.9523 -9.7492 18 7 8.4011 2.2406 -9.9959 19 14 9.7477 -0.0771 -10.7004 20 1 9.0340 -1.1514 -11.4365 21 1 10.4726 0.7868 -11.6665 22 1 10.7178 -0.6853 -9.7548 23 6 2.0219 -0.4908 -3.7079 24 6 2.0323 -0.7104 1.2305 25 7 2.0314 -2.0039 1.4425 26 7 2.5430 -2.2168 2.6056 27 7 2.8630 -1.0922 3.1443 28 7 2.5637 -0.1396 2.3274 29 6 2.7640 1.2943 2.5518 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3634 0.5137 0.8900 32 1 -0.3635 0.5138 -0.8899 33 1 1.4495 -1.4979 -1.4101 34 1 3.7548 1.6691 -2.4270 35 1 4.2742 -0.0720 -2.4165 36 1 4.3038 -1.0384 -4.9817 37 1 6.6168 -0.3802 -6.1977 38 1 5.3806 -0.7225 -7.4320 39 1 8.9604 2.6553 -10.6713 40 1 2.3748 -1.5216 -3.6765 41 1 1.0618 -0.3862 -4.2134 42 1 1.8778 1.7150 3.0269 43 1 3.6286 1.4434 3.1987 44 1 2.9348 1.7911 1.5968 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001752713105.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:00:12 Heat of formation + Delta-G solvation = 104.944242 kcal Electronic energy + Delta-G solvation = -25978.990592 eV Core-core repulsion = 22096.251241 eV Total energy + Delta-G solvation = -3882.739351 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.142 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -44.51474 -40.18369 -38.54828 -36.67673 -35.95559 -33.39370 -32.43220 -32.13084 -29.91907 -28.90602 -28.78258 -26.08015 -25.52169 -25.22248 -23.93097 -23.07889 -21.57082 -20.42304 -20.06450 -18.00590 -17.80021 -17.63495 -16.90492 -16.48795 -16.30692 -15.44285 -15.16187 -15.05884 -14.80704 -14.70062 -14.31460 -14.25222 -13.99197 -13.55602 -13.35887 -13.10711 -12.73038 -12.70420 -12.68474 -12.61965 -12.53888 -12.09407 -11.89158 -11.65265 -11.43921 -11.26297 -11.17110 -11.04720 -11.03883 -10.87591 -10.76124 -10.41582 -9.82676 -9.40948 -9.11521 -9.06356 -8.83641 -8.25199 -6.50764 -6.22170 -3.92799 0.84775 1.54165 1.92421 3.00355 3.04438 3.23438 3.24459 3.28233 3.34859 3.55287 3.74610 3.88772 4.01972 4.14874 4.20212 4.25591 4.31158 4.33244 4.57946 4.61734 4.66761 4.69220 4.86152 4.96965 5.08784 5.10698 5.12986 5.25118 5.35802 5.40151 5.42721 5.50796 5.61039 5.70213 5.72056 5.79662 5.88530 5.98724 6.13963 6.46956 6.65637 6.76472 7.58962 7.70497 8.28063 8.34637 8.59474 9.23162 10.85175 Molecular weight = 340.14amu Principal moments of inertia in cm(-1) A = 0.022178 B = 0.001711 C = 0.001672 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1262.182964 B =16360.018080 C =16741.217677 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C 0.169 3.831 3 H 0.103 0.897 4 N -0.662 5.662 5 C 0.061 3.939 6 H 0.082 0.918 7 C -0.140 4.140 8 C 0.128 3.872 9 H 0.115 0.885 10 N -0.726 5.726 11 C 0.534 3.466 12 O -0.519 6.519 13 C -0.155 4.155 14 S -0.061 6.061 15 C -0.536 4.536 16 H 0.072 0.928 17 C 0.073 3.927 18 N -0.868 5.868 19 Si 0.919 3.081 20 H -0.274 1.274 21 H -0.283 1.283 22 H -0.274 1.274 23 C -0.147 4.147 24 C 0.199 3.801 25 N -0.289 5.289 26 N -0.077 5.077 27 N -0.099 5.099 28 N -0.308 5.308 29 C 0.076 3.924 30 H 0.073 0.927 31 H 0.064 0.936 32 H 0.076 0.924 33 H 0.357 0.643 34 H 0.069 0.931 35 H 0.093 0.907 36 H 0.400 0.600 37 H 0.090 0.910 38 H 0.090 0.910 39 H 0.269 0.731 40 H 0.095 0.905 41 H 0.076 0.924 42 H 0.098 0.902 43 H 0.109 0.891 44 H 0.106 0.894 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.055 -2.459 23.498 29.735 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.239 4.239 2 C 0.055 3.945 3 H 0.121 0.879 4 N -0.294 5.294 5 C -0.049 4.049 6 H 0.100 0.900 7 C -0.180 4.180 8 C 0.022 3.978 9 H 0.133 0.867 10 N -0.379 5.379 11 C 0.320 3.680 12 O -0.393 6.393 13 C -0.305 4.305 14 S 0.166 5.834 15 C -0.684 4.684 16 H 0.090 0.910 17 C -0.136 4.136 18 N -0.503 5.503 19 Si 0.745 3.255 20 H -0.199 1.199 21 H -0.208 1.208 22 H -0.199 1.199 23 C -0.186 4.186 24 C -0.080 4.080 25 N -0.139 5.139 26 N -0.071 5.071 27 N -0.084 5.084 28 N -0.110 5.110 29 C -0.065 4.065 30 H 0.092 0.908 31 H 0.083 0.917 32 H 0.095 0.905 33 H 0.179 0.821 34 H 0.088 0.912 35 H 0.111 0.889 36 H 0.234 0.766 37 H 0.108 0.892 38 H 0.108 0.892 39 H 0.079 0.921 40 H 0.114 0.886 41 H 0.095 0.905 42 H 0.116 0.884 43 H 0.127 0.873 44 H 0.124 0.876 Dipole moment (debyes) X Y Z Total from point charges -17.458 -1.410 24.173 29.851 hybrid contribution 0.245 -1.470 -0.939 1.761 sum -17.213 -2.880 23.234 29.059 Atomic orbital electron populations 1.22514 0.93942 1.04060 1.03405 1.19903 0.93687 0.96145 0.84775 0.87862 1.60367 1.57486 1.09482 1.02112 1.22908 0.98330 0.95273 0.88416 0.90041 1.23656 0.96510 1.02169 0.95660 1.22192 0.88687 0.97555 0.89387 0.86730 1.45934 1.39870 1.12392 1.39736 1.20343 0.81443 0.86836 0.79377 1.90689 1.65336 1.15441 1.67871 1.23545 0.99529 1.05766 1.01690 1.85365 1.46020 1.09761 1.42252 1.22830 1.23977 0.97038 1.24566 0.90966 1.24994 0.97032 0.95276 0.96296 1.70013 1.38628 1.09814 1.31870 0.86222 0.80381 0.79612 0.79276 1.19932 1.20816 1.19931 1.23605 0.99983 1.00071 0.94899 1.25974 0.99159 0.90420 0.92441 1.74970 1.17651 1.11555 1.09687 1.78642 1.11359 1.15365 1.01686 1.78897 1.19140 0.92334 1.18069 1.48384 1.40381 1.10380 1.11887 1.22436 1.05673 0.72726 1.05693 0.90813 0.91663 0.90477 0.82123 0.91205 0.88853 0.76614 0.89210 0.89201 0.92142 0.88615 0.90486 0.88358 0.87268 0.87583 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -0.62 9.13 37.16 0.34 -0.28 16 2 C 0.17 0.82 2.83 -68.87 -0.19 0.62 16 3 H 0.10 0.31 6.56 -51.93 -0.34 -0.03 16 4 N -0.66 -3.97 6.28 -100.10 -0.63 -4.60 16 5 C 0.06 0.35 3.82 -66.90 -0.26 0.10 16 6 H 0.08 0.36 7.48 -51.93 -0.39 -0.03 16 7 C -0.14 -1.20 7.70 -25.82 -0.20 -1.40 16 8 C 0.13 1.29 4.24 -67.03 -0.28 1.00 16 9 H 0.11 1.34 7.46 -51.93 -0.39 0.96 16 10 N -0.73 -9.03 5.36 -52.93 -0.28 -9.31 16 11 C 0.53 9.57 7.85 -10.99 -0.09 9.49 16 12 O -0.52 -11.34 15.46 5.55 0.09 -11.25 16 13 C -0.15 -3.06 6.16 36.00 0.22 -2.84 16 14 S -0.06 -1.63 20.57 -107.50 -2.21 -3.84 16 15 C -0.54 -15.20 9.50 30.94 0.29 -14.91 16 16 H 0.07 1.94 7.80 -52.49 -0.41 1.53 16 17 C 0.07 2.08 5.49 -17.43 -0.10 1.99 16 18 N -0.87 -26.05 13.22 55.49 0.73 -25.31 16 19 Si 0.92 21.35 29.55 -169.99 -5.02 16.33 16 20 H -0.27 -6.21 7.11 56.52 0.40 -5.81 16 21 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 22 H -0.27 -6.22 7.11 56.52 0.40 -5.82 16 23 C -0.15 -0.96 7.42 -25.92 -0.19 -1.16 16 24 C 0.20 1.60 6.97 -155.43 -1.08 0.52 16 25 N -0.29 -3.31 12.36 32.70 0.40 -2.90 16 26 N -0.08 -0.98 13.43 60.35 0.81 -0.17 16 27 N -0.10 -1.06 13.29 60.35 0.80 -0.26 16 28 N -0.31 -2.25 3.75 -65.03 -0.24 -2.50 16 29 C 0.08 0.15 11.21 59.85 0.67 0.82 16 30 H 0.07 0.33 8.13 -51.93 -0.42 -0.09 16 31 H 0.06 0.19 8.14 -51.93 -0.42 -0.24 16 32 H 0.08 0.18 7.71 -51.93 -0.40 -0.22 16 33 H 0.36 2.07 8.30 -39.29 -0.33 1.74 16 34 H 0.07 0.62 8.14 -51.93 -0.42 0.19 16 35 H 0.09 0.91 8.14 -51.93 -0.42 0.49 16 36 H 0.40 3.95 8.73 -40.82 -0.36 3.60 16 37 H 0.09 1.65 8.14 -51.92 -0.42 1.23 16 38 H 0.09 1.64 8.14 -51.91 -0.42 1.22 16 39 H 0.27 7.51 8.31 -40.82 -0.34 7.17 16 40 H 0.10 0.61 8.12 -51.93 -0.42 0.19 16 41 H 0.08 0.45 8.14 -51.93 -0.42 0.03 16 42 H 0.10 -0.02 8.14 -51.93 -0.42 -0.44 16 43 H 0.11 0.13 8.14 -51.93 -0.42 -0.29 16 44 H 0.11 0.00 7.01 -51.93 -0.36 -0.36 16 LS Contribution 387.66 15.07 5.84 5.84 Total: -1.00 -38.15 387.66 -6.91 -45.06 By element: Atomic # 1 Polarization: 5.31 SS G_CDS: -6.33 Total: -1.03 kcal Atomic # 6 Polarization: -5.19 SS G_CDS: -0.87 Total: -6.06 kcal Atomic # 7 Polarization: -46.65 SS G_CDS: 1.59 Total: -45.06 kcal Atomic # 8 Polarization: -11.34 SS G_CDS: 0.09 Total: -11.25 kcal Atomic # 14 Polarization: 21.35 SS G_CDS: -5.02 Total: 16.33 kcal Atomic # 16 Polarization: -1.63 SS G_CDS: -2.21 Total: -3.84 kcal Total LS contribution 5.84 Total: 5.84 kcal Total: -38.15 -6.91 -45.06 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001752713105.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 150.007 kcal (2) G-P(sol) polarization free energy of solvation -38.152 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 111.856 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.912 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.063 kcal (6) G-S(sol) free energy of system = (1) + (5) 104.944 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds