Wall clock time and date at job start Sat Apr 11 2020 06:00:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.09001 * 109.47554 * 2 1 4 4 C 1.50703 * 109.47339 * 240.00177 * 2 1 3 5 5 N 1.31075 * 126.65836 * 284.69096 * 4 2 1 6 6 N 1.28840 * 107.99090 * 179.89247 * 5 4 2 7 7 N 1.28740 * 109.39634 * 0.37794 * 6 5 4 8 8 N 1.29023 * 108.80685 * 359.76341 * 7 6 5 9 9 C 1.46498 * 126.43741 * 179.97438 * 8 7 6 10 10 N 1.46901 * 109.47005 * 120.00171 * 2 1 3 11 11 C 1.47476 * 111.00332 * 284.50546 * 10 2 1 12 12 C 1.53504 * 87.93656 * 221.29769 * 11 10 2 13 13 C 1.52997 * 114.17350 * 139.67127 * 12 11 10 14 14 N 1.46498 * 109.47041 * 91.15760 * 13 12 11 15 15 C 1.34781 * 119.99793 * 180.02562 * 14 13 12 16 16 O 1.21283 * 119.99869 * 359.97438 * 15 14 13 17 17 C 1.50697 * 119.99916 * 180.02562 * 15 14 13 18 18 S 1.81001 * 109.47212 * 179.97438 * 17 15 14 19 19 C 1.76197 * 100.00117 * 179.97438 * 18 17 15 20 20 H 1.08007 * 120.00251 * 0.02562 * 19 18 17 21 21 C 1.38803 * 120.00039 * 179.97438 * 19 18 17 22 22 N 1.31631 * 120.00041 * 180.02562 * 21 19 18 23 23 Si 1.86793 * 119.99904 * 0.02562 * 21 19 18 24 24 H 1.48504 * 109.47085 * 90.00132 * 23 21 19 25 25 H 1.48503 * 109.47253 * 209.99994 * 23 21 19 26 26 H 1.48502 * 109.47276 * 329.99919 * 23 21 19 27 27 C 1.47487 * 110.99983 * 188.53326 * 10 2 1 28 28 H 1.09002 * 109.47127 * 175.59790 * 1 2 3 29 29 H 1.09002 * 109.47048 * 55.59759 * 1 2 3 30 30 H 1.09000 * 109.47386 * 295.59406 * 1 2 3 31 31 H 1.09002 * 109.47292 * 270.02806 * 9 8 7 32 32 H 1.09005 * 109.47378 * 30.02712 * 9 8 7 33 33 H 1.09001 * 109.47527 * 150.02730 * 9 8 7 34 34 H 1.08996 * 113.47585 * 336.06845 * 11 10 2 35 35 H 1.09000 * 113.47305 * 106.52760 * 11 10 2 36 36 H 1.09007 * 114.16878 * 272.37863 * 12 11 10 37 37 H 1.09000 * 109.47495 * 211.16417 * 13 12 11 38 38 H 1.09006 * 109.46961 * 331.15649 * 13 12 11 39 39 H 0.96992 * 120.00273 * 0.02562 * 14 13 12 40 40 H 1.09000 * 109.47023 * 299.99369 * 17 15 14 41 41 H 1.08993 * 109.47533 * 59.99842 * 17 15 14 42 42 H 0.96999 * 119.99915 * 179.97438 * 22 21 19 43 43 H 1.09000 * 113.47890 * 253.47176 * 27 10 2 44 44 H 1.08996 * 113.47176 * 23.88029 * 27 10 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0323 -0.7104 -1.2305 5 7 2.0418 -2.0046 -1.4379 6 7 2.5452 -2.2169 -2.6047 7 7 2.8644 -1.0922 -3.1438 8 7 2.5637 -0.1395 -2.3274 9 6 2.7636 1.2943 -2.5519 10 7 2.0196 -0.6925 1.1994 11 6 1.8706 0.1551 2.3970 12 6 3.2565 -0.3300 2.8447 13 6 4.1327 0.7612 3.4630 14 7 3.9246 0.7913 4.9129 15 6 4.5962 1.6800 5.6717 16 8 5.3730 2.4544 5.1542 17 6 4.3826 1.7107 7.1631 18 16 5.4191 3.0017 7.8947 19 6 4.9816 2.8203 9.5918 20 1 4.2629 2.0700 9.8870 21 6 5.5612 3.6409 10.5495 22 7 5.2347 3.5051 11.8174 23 14 6.8046 4.9381 10.0390 24 1 6.0982 6.2088 9.7363 25 1 7.7707 5.1600 11.1447 26 1 7.5333 4.4767 8.8301 27 6 3.4796 -0.5378 1.3401 28 1 -0.3633 -1.0246 -0.0789 29 1 -0.3633 0.5806 -0.8479 30 1 -0.3634 0.4439 0.9268 31 1 3.7490 1.5852 -2.1879 32 1 2.6925 1.5086 -3.6183 33 1 1.9982 1.8562 -2.0166 34 1 1.8353 1.2212 2.1728 35 1 1.0645 -0.1643 3.0575 36 1 3.2404 -1.2526 3.4251 37 1 5.1807 0.5496 3.2506 38 1 3.8638 1.7279 3.0372 39 1 3.3036 0.1717 5.3267 40 1 3.3346 1.9217 7.3758 41 1 4.6522 0.7442 7.5887 42 1 5.6401 4.0783 12.4867 43 1 4.0370 -1.4445 1.1048 44 1 3.8737 0.3428 0.8329 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001753402275.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:00:26 Heat of formation + Delta-G solvation = 123.651123 kcal Electronic energy + Delta-G solvation = -26192.438566 eV Core-core repulsion = 22310.510407 eV Total energy + Delta-G solvation = -3881.928159 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.142 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -44.63571 -41.08106 -39.18604 -36.26795 -35.53437 -34.13123 -32.46819 -31.76439 -30.27676 -29.00352 -28.32571 -26.71980 -25.67584 -25.21653 -24.34087 -23.38954 -21.26074 -20.84534 -20.04828 -18.12901 -17.92383 -17.73754 -16.86192 -16.65632 -16.36789 -16.07841 -15.49998 -15.11417 -14.97892 -14.76184 -14.34397 -14.22906 -13.89456 -13.80614 -13.39986 -13.31644 -13.22967 -12.93357 -12.82415 -12.67381 -12.51931 -12.30176 -11.99748 -11.72885 -11.60586 -11.41653 -11.35115 -11.29459 -11.04677 -11.01669 -10.64148 -10.47667 -9.89393 -9.66343 -9.52242 -9.08346 -9.01785 -8.54123 -6.95615 -6.31785 -4.03911 0.72368 1.42723 1.83531 2.70368 2.90179 3.11481 3.19637 3.27801 3.30524 3.47293 3.57808 3.69129 3.89066 3.99270 4.17473 4.19567 4.27634 4.30082 4.50356 4.55190 4.59471 4.69814 4.72840 4.77593 4.90041 5.01795 5.07212 5.09386 5.13768 5.19023 5.23036 5.26321 5.32883 5.46660 5.55222 5.55853 5.67700 5.72405 5.77223 5.97387 6.31025 6.43533 7.52560 7.91214 8.19513 8.38810 8.41272 9.14260 10.77399 Molecular weight = 340.14amu Principal moments of inertia in cm(-1) A = 0.030347 B = 0.001728 C = 0.001694 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 922.454345 B =16201.543897 C =16520.312450 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C 0.133 3.867 3 H 0.074 0.926 4 C 0.187 3.813 5 N -0.273 5.273 6 N -0.077 5.077 7 N -0.096 5.096 8 N -0.309 5.309 9 C 0.074 3.926 10 N -0.448 5.448 11 C 0.004 3.996 12 C -0.122 4.122 13 C 0.133 3.867 14 N -0.735 5.735 15 C 0.531 3.469 16 O -0.521 6.521 17 C -0.124 4.124 18 S -0.143 6.143 19 C -0.522 4.522 20 H 0.088 0.912 21 C 0.095 3.905 22 N -0.880 5.880 23 Si 0.857 3.143 24 H -0.267 1.267 25 H -0.274 1.274 26 H -0.235 1.235 27 C 0.005 3.995 28 H 0.078 0.922 29 H 0.062 0.938 30 H 0.077 0.923 31 H 0.100 0.900 32 H 0.110 0.890 33 H 0.104 0.896 34 H 0.077 0.923 35 H 0.097 0.903 36 H 0.115 0.885 37 H 0.071 0.929 38 H 0.066 0.934 39 H 0.401 0.599 40 H 0.097 0.903 41 H 0.098 0.902 42 H 0.271 0.729 43 H 0.092 0.908 44 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.052 -5.104 -27.738 29.942 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C 0.020 3.980 3 H 0.091 0.909 4 C -0.092 4.092 5 N -0.122 5.122 6 N -0.071 5.071 7 N -0.081 5.081 8 N -0.112 5.112 9 C -0.067 4.067 10 N -0.171 5.171 11 C -0.125 4.125 12 C -0.142 4.142 13 C 0.008 3.992 14 N -0.390 5.390 15 C 0.317 3.683 16 O -0.396 6.396 17 C -0.275 4.275 18 S 0.083 5.917 19 C -0.669 4.669 20 H 0.106 0.894 21 C -0.113 4.113 22 N -0.516 5.516 23 Si 0.682 3.318 24 H -0.192 1.192 25 H -0.199 1.199 26 H -0.159 1.159 27 C -0.125 4.125 28 H 0.097 0.903 29 H 0.081 0.919 30 H 0.096 0.904 31 H 0.118 0.882 32 H 0.129 0.871 33 H 0.123 0.877 34 H 0.095 0.905 35 H 0.115 0.885 36 H 0.133 0.867 37 H 0.089 0.911 38 H 0.085 0.915 39 H 0.236 0.764 40 H 0.116 0.884 41 H 0.116 0.884 42 H 0.081 0.919 43 H 0.110 0.890 44 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -8.786 -5.577 -29.285 31.079 hybrid contribution -0.458 1.177 1.084 1.664 sum -9.244 -4.400 -28.201 30.002 Atomic orbital electron populations 1.21800 0.90846 1.04369 1.02943 1.20716 0.97766 0.94107 0.85370 0.90879 1.25837 1.00100 0.90569 0.92674 1.75098 1.16643 1.11298 1.09180 1.78703 1.11545 1.15299 1.01571 1.78916 1.18860 0.92393 1.17938 1.48477 1.40260 1.10433 1.11994 1.22458 1.05114 0.72663 1.06475 1.69166 1.07895 1.39774 1.00241 1.24047 0.98875 0.96832 0.92702 1.22968 0.95207 1.00059 0.95921 1.21222 0.99631 0.97612 0.80703 1.45932 1.46976 1.39012 1.07097 1.20302 0.79632 0.79633 0.88757 1.90700 1.35127 1.39447 1.74283 1.23277 1.05469 1.05451 0.93300 1.84783 1.56154 1.44481 1.06237 1.22313 1.30828 1.24506 0.89294 0.89351 1.24718 0.95958 0.96616 0.94042 1.69937 1.42492 1.38876 1.00294 0.86733 0.82155 0.82596 0.80343 1.19227 1.19931 1.15949 1.23847 0.90885 1.02291 0.95462 0.90281 0.91883 0.90375 0.88182 0.87108 0.87703 0.90475 0.88466 0.86653 0.91105 0.91535 0.76445 0.88449 0.88389 0.91923 0.88983 0.91201 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.64 9.34 37.15 0.35 -0.29 16 2 C 0.13 0.71 1.96 -68.87 -0.13 0.57 16 3 H 0.07 0.21 6.61 -51.93 -0.34 -0.13 16 4 C 0.19 1.49 6.34 -155.43 -0.99 0.51 16 5 N -0.27 -3.17 12.36 32.70 0.40 -2.77 16 6 N -0.08 -0.97 13.43 60.35 0.81 -0.16 16 7 N -0.10 -0.98 13.29 60.35 0.80 -0.18 16 8 N -0.31 -2.12 3.75 -65.02 -0.24 -2.36 16 9 C 0.07 0.11 11.04 59.85 0.66 0.77 16 10 N -0.45 -2.94 6.12 -237.99 -1.46 -4.40 16 11 C 0.00 0.02 6.59 -7.55 -0.05 -0.03 16 12 C -0.12 -0.75 4.09 -90.09 -0.37 -1.12 16 13 C 0.13 1.17 5.58 -4.04 -0.02 1.15 16 14 N -0.74 -7.97 5.56 -60.29 -0.33 -8.31 16 15 C 0.53 8.68 7.85 -10.99 -0.09 8.59 16 16 O -0.52 -10.58 15.86 5.55 0.09 -10.49 16 17 C -0.12 -2.27 6.16 36.00 0.22 -2.05 16 18 S -0.14 -3.52 18.55 -107.50 -1.99 -5.51 16 19 C -0.52 -14.74 10.04 30.94 0.31 -14.43 16 20 H 0.09 2.60 8.03 -52.48 -0.42 2.18 16 21 C 0.10 2.75 5.50 -17.43 -0.10 2.65 16 22 N -0.88 -26.17 13.97 55.49 0.78 -25.39 16 23 Si 0.86 21.41 27.74 -169.99 -4.71 16.69 16 24 H -0.27 -6.58 7.11 56.52 0.40 -6.18 16 25 H -0.27 -6.61 7.11 56.52 0.40 -6.20 16 26 H -0.24 -5.87 6.74 56.52 0.38 -5.49 16 27 C 0.00 0.03 6.72 -7.54 -0.05 -0.02 16 28 H 0.08 0.51 8.14 -51.93 -0.42 0.08 16 29 H 0.06 0.20 8.14 -51.93 -0.42 -0.22 16 30 H 0.08 0.28 7.62 -51.93 -0.40 -0.12 16 31 H 0.10 0.03 8.14 -51.93 -0.42 -0.40 16 32 H 0.11 0.03 8.14 -51.93 -0.42 -0.39 16 33 H 0.10 -0.10 7.41 -51.93 -0.38 -0.48 16 34 H 0.08 0.33 7.41 -51.93 -0.38 -0.05 16 35 H 0.10 0.47 8.14 -51.93 -0.42 0.05 16 36 H 0.12 0.71 8.14 -51.93 -0.42 0.29 16 37 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 38 H 0.07 0.60 7.81 -51.93 -0.41 0.20 16 39 H 0.40 3.24 8.47 -40.82 -0.35 2.90 16 40 H 0.10 1.64 8.14 -51.92 -0.42 1.21 16 41 H 0.10 1.67 8.14 -51.92 -0.42 1.25 16 42 H 0.27 7.49 8.31 -40.82 -0.34 7.15 16 43 H 0.09 0.72 8.14 -51.93 -0.42 0.30 16 44 H 0.07 0.38 7.76 -51.93 -0.40 -0.03 16 LS Contribution 383.62 15.07 5.78 5.78 Total: -1.00 -37.80 383.62 -6.80 -44.60 By element: Atomic # 1 Polarization: 2.67 SS G_CDS: -6.47 Total: -3.80 kcal Atomic # 6 Polarization: -3.45 SS G_CDS: -0.25 Total: -3.70 kcal Atomic # 7 Polarization: -44.33 SS G_CDS: 0.76 Total: -43.57 kcal Atomic # 8 Polarization: -10.58 SS G_CDS: 0.09 Total: -10.49 kcal Atomic # 14 Polarization: 21.41 SS G_CDS: -4.71 Total: 16.69 kcal Atomic # 16 Polarization: -3.52 SS G_CDS: -1.99 Total: -5.51 kcal Total LS contribution 5.78 Total: 5.78 kcal Total: -37.80 -6.80 -44.60 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001753402275.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 168.251 kcal (2) G-P(sol) polarization free energy of solvation -37.797 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 130.454 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.803 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.600 kcal (6) G-S(sol) free energy of system = (1) + (5) 123.651 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds