Wall clock time and date at job start Sat Apr 11 2020 06:00:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.09001 * 109.47554 * 2 1 4 4 C 1.50703 * 109.47339 * 240.00177 * 2 1 3 5 5 N 1.31075 * 126.65836 * 284.69096 * 4 2 1 6 6 N 1.28840 * 107.99090 * 179.89247 * 5 4 2 7 7 N 1.28740 * 109.39634 * 0.37794 * 6 5 4 8 8 N 1.29023 * 108.80685 * 359.76341 * 7 6 5 9 9 C 1.46498 * 126.43741 * 179.97438 * 8 7 6 10 10 N 1.46901 * 109.47005 * 120.00171 * 2 1 3 11 11 C 1.47476 * 111.00332 * 284.50546 * 10 2 1 12 12 C 1.53504 * 87.93656 * 221.29769 * 11 10 2 13 13 C 1.52997 * 114.17350 * 139.67127 * 12 11 10 14 14 N 1.46498 * 109.47041 * 91.15760 * 13 12 11 15 15 C 1.34781 * 119.99793 * 180.02562 * 14 13 12 16 16 O 1.21283 * 119.99869 * 359.97438 * 15 14 13 17 17 C 1.50697 * 119.99916 * 180.02562 * 15 14 13 18 18 S 1.81001 * 109.47212 * 179.97438 * 17 15 14 19 19 C 1.76197 * 100.00117 * 179.97438 * 18 17 15 20 20 H 1.08007 * 120.00251 * 0.02562 * 19 18 17 21 21 C 1.38803 * 120.00039 * 179.97438 * 19 18 17 22 22 N 1.31631 * 120.00041 * 180.02562 * 21 19 18 23 23 Si 1.86793 * 119.99904 * 0.02562 * 21 19 18 24 24 H 1.48504 * 109.47085 * 90.00132 * 23 21 19 25 25 H 1.48503 * 109.47253 * 209.99994 * 23 21 19 26 26 H 1.48502 * 109.47276 * 329.99919 * 23 21 19 27 27 C 1.47487 * 110.99983 * 188.53326 * 10 2 1 28 28 H 1.09002 * 109.47127 * 175.59790 * 1 2 3 29 29 H 1.09002 * 109.47048 * 55.59759 * 1 2 3 30 30 H 1.09000 * 109.47386 * 295.59406 * 1 2 3 31 31 H 1.09002 * 109.47292 * 270.02806 * 9 8 7 32 32 H 1.09005 * 109.47378 * 30.02712 * 9 8 7 33 33 H 1.09001 * 109.47527 * 150.02730 * 9 8 7 34 34 H 1.08996 * 113.47585 * 336.06845 * 11 10 2 35 35 H 1.09000 * 113.47305 * 106.52760 * 11 10 2 36 36 H 1.09007 * 114.16878 * 272.37863 * 12 11 10 37 37 H 1.09000 * 109.47495 * 211.16417 * 13 12 11 38 38 H 1.09006 * 109.46961 * 331.15649 * 13 12 11 39 39 H 0.96992 * 120.00273 * 0.02562 * 14 13 12 40 40 H 1.09000 * 109.47023 * 299.99369 * 17 15 14 41 41 H 1.08993 * 109.47533 * 59.99842 * 17 15 14 42 42 H 0.96999 * 119.99915 * 179.97438 * 22 21 19 43 43 H 1.09000 * 113.47890 * 253.47176 * 27 10 2 44 44 H 1.08996 * 113.47176 * 23.88029 * 27 10 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0323 -0.7104 -1.2305 5 7 2.0418 -2.0046 -1.4379 6 7 2.5452 -2.2169 -2.6047 7 7 2.8644 -1.0922 -3.1438 8 7 2.5637 -0.1395 -2.3274 9 6 2.7636 1.2943 -2.5519 10 7 2.0196 -0.6925 1.1994 11 6 1.8706 0.1551 2.3970 12 6 3.2565 -0.3300 2.8447 13 6 4.1327 0.7612 3.4630 14 7 3.9246 0.7913 4.9129 15 6 4.5962 1.6800 5.6717 16 8 5.3730 2.4544 5.1542 17 6 4.3826 1.7107 7.1631 18 16 5.4191 3.0017 7.8947 19 6 4.9816 2.8203 9.5918 20 1 4.2629 2.0700 9.8870 21 6 5.5612 3.6409 10.5495 22 7 5.2347 3.5051 11.8174 23 14 6.8046 4.9381 10.0390 24 1 6.0982 6.2088 9.7363 25 1 7.7707 5.1600 11.1447 26 1 7.5333 4.4767 8.8301 27 6 3.4796 -0.5378 1.3401 28 1 -0.3633 -1.0246 -0.0789 29 1 -0.3633 0.5806 -0.8479 30 1 -0.3634 0.4439 0.9268 31 1 3.7490 1.5852 -2.1879 32 1 2.6925 1.5086 -3.6183 33 1 1.9982 1.8562 -2.0166 34 1 1.8353 1.2212 2.1728 35 1 1.0645 -0.1643 3.0575 36 1 3.2404 -1.2526 3.4251 37 1 5.1807 0.5496 3.2506 38 1 3.8638 1.7279 3.0372 39 1 3.3036 0.1717 5.3267 40 1 3.3346 1.9217 7.3758 41 1 4.6522 0.7442 7.5887 42 1 5.6401 4.0783 12.4867 43 1 4.0370 -1.4445 1.1048 44 1 3.8737 0.3428 0.8329 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001753402275.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:00:25 Heat of formation + Delta-G solvation = 92.085978 kcal Electronic energy + Delta-G solvation = -26193.807334 eV Core-core repulsion = 22310.510407 eV Total energy + Delta-G solvation = -3883.296927 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.142 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -45.27682 -41.60472 -40.39343 -36.81506 -36.26648 -34.97654 -34.65007 -32.42962 -31.38947 -29.33656 -29.16964 -27.83156 -27.17347 -25.81070 -25.01835 -23.96590 -21.88665 -21.77687 -20.76301 -19.80809 -18.54324 -18.34344 -17.85182 -17.60131 -17.11256 -17.06465 -16.71832 -16.53695 -15.97025 -15.69270 -15.11591 -14.91760 -14.78886 -14.62840 -14.57717 -14.43106 -13.88926 -13.65988 -13.48154 -13.34248 -13.30813 -13.19976 -13.00562 -12.85666 -12.79799 -12.66294 -12.28587 -12.16558 -11.98821 -11.87954 -11.83618 -11.54712 -11.15296 -11.09047 -10.95647 -10.51064 -10.12142 -9.94487 -8.96963 -8.49733 -6.20175 0.13315 1.01962 1.03316 1.11940 1.32707 1.48561 1.58402 1.60833 2.24243 2.28249 2.69421 2.73536 2.79124 2.88578 3.30338 3.36848 3.62424 3.75351 3.86919 3.93636 4.14002 4.16409 4.20493 4.23565 4.26905 4.27539 4.32989 4.50884 4.52159 4.55455 4.65113 4.72915 4.74976 4.78726 4.84444 4.86831 5.08546 5.12937 5.19977 5.29235 5.47463 5.72446 5.90815 6.13565 6.51220 6.95565 7.23647 7.50874 8.62530 Molecular weight = 340.14amu Principal moments of inertia in cm(-1) A = 0.030347 B = 0.001728 C = 0.001694 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 922.454345 B =16201.543897 C =16520.312450 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C 0.133 3.867 3 H 0.108 0.892 4 C 0.192 3.808 5 N -0.311 5.311 6 N -0.117 5.117 7 N -0.110 5.110 8 N -0.297 5.297 9 C 0.057 3.943 10 N -0.468 5.468 11 C 0.012 3.988 12 C -0.112 4.112 13 C 0.135 3.865 14 N -0.709 5.709 15 C 0.536 3.464 16 O -0.564 6.564 17 C -0.113 4.113 18 S -0.177 6.177 19 C -0.529 4.529 20 H 0.062 0.938 21 C 0.044 3.956 22 N -0.917 5.917 23 Si 0.915 3.085 24 H -0.261 1.261 25 H -0.262 1.262 26 H -0.236 1.236 27 C 0.006 3.994 28 H 0.053 0.947 29 H 0.078 0.922 30 H 0.092 0.908 31 H 0.116 0.884 32 H 0.122 0.878 33 H 0.136 0.864 34 H 0.095 0.905 35 H 0.104 0.896 36 H 0.116 0.884 37 H 0.060 0.940 38 H 0.072 0.928 39 H 0.418 0.582 40 H 0.115 0.885 41 H 0.112 0.888 42 H 0.276 0.724 43 H 0.072 0.928 44 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.715 -3.641 -28.969 31.101 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C 0.021 3.979 3 H 0.126 0.874 4 C -0.086 4.086 5 N -0.161 5.161 6 N -0.111 5.111 7 N -0.096 5.096 8 N -0.100 5.100 9 C -0.082 4.082 10 N -0.191 5.191 11 C -0.116 4.116 12 C -0.131 4.131 13 C 0.011 3.989 14 N -0.363 5.363 15 C 0.321 3.679 16 O -0.443 6.443 17 C -0.263 4.263 18 S 0.050 5.950 19 C -0.676 4.676 20 H 0.081 0.919 21 C -0.161 4.161 22 N -0.555 5.555 23 Si 0.737 3.263 24 H -0.186 1.186 25 H -0.186 1.186 26 H -0.160 1.160 27 C -0.124 4.124 28 H 0.072 0.928 29 H 0.097 0.903 30 H 0.111 0.889 31 H 0.135 0.865 32 H 0.141 0.859 33 H 0.154 0.846 34 H 0.113 0.887 35 H 0.122 0.878 36 H 0.134 0.866 37 H 0.078 0.922 38 H 0.090 0.910 39 H 0.255 0.745 40 H 0.134 0.866 41 H 0.130 0.870 42 H 0.086 0.914 43 H 0.090 0.910 44 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges -9.486 -4.144 -30.532 32.239 hybrid contribution -0.357 0.657 1.382 1.572 sum -9.844 -3.487 -29.150 30.964 Atomic orbital electron populations 1.21799 0.90193 1.03259 1.04415 1.20969 0.98177 0.95130 0.83629 0.87425 1.26257 0.99106 0.89820 0.93466 1.74985 1.17921 1.13778 1.09375 1.78658 1.13319 1.16647 1.02471 1.78799 1.19206 0.92781 1.18819 1.48826 1.38573 1.11653 1.10975 1.23041 1.07217 0.69799 1.08106 1.69150 1.07755 1.40992 1.01247 1.24076 0.98027 0.97581 0.91953 1.22826 0.95570 0.99205 0.95531 1.21343 0.99707 0.98870 0.78952 1.45707 1.45466 1.37273 1.07872 1.19900 0.79788 0.80214 0.87975 1.90692 1.37339 1.41601 1.74647 1.23283 1.04918 1.03431 0.94717 1.84689 1.58419 1.47853 1.04082 1.22477 1.29971 1.23588 0.91585 0.91945 1.25582 0.97789 0.98662 0.94094 1.70020 1.43946 1.40193 1.01370 0.85856 0.80139 0.80109 0.80198 1.18591 1.18593 1.16017 1.23826 0.90994 1.01990 0.95564 0.92752 0.90345 0.88896 0.86532 0.85950 0.84568 0.88743 0.87793 0.86568 0.92206 0.90955 0.74490 0.86648 0.87010 0.91431 0.90972 0.89799 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.88 9.34 71.98 0.67 -0.21 16 2 C 0.13 1.03 1.96 44.17 0.09 1.12 16 3 H 0.11 0.10 6.61 -2.39 -0.02 0.09 16 4 C 0.19 2.80 6.34 138.14 0.88 3.67 16 5 N -0.31 -7.30 12.36 -50.45 -0.62 -7.92 16 6 N -0.12 -3.03 13.43 37.01 0.50 -2.53 16 7 N -0.11 -2.23 13.29 37.02 0.49 -1.74 16 8 N -0.30 -3.58 3.75 -359.64 -1.35 -4.93 16 9 C 0.06 -0.02 11.04 127.77 1.41 1.40 16 10 N -0.47 -5.02 6.12 -906.85 -5.55 -10.56 16 11 C 0.01 0.08 6.59 83.57 0.55 0.63 16 12 C -0.11 -1.07 4.09 -10.45 -0.04 -1.11 16 13 C 0.14 1.99 5.58 86.38 0.48 2.47 16 14 N -0.71 -13.28 5.56 -463.06 -2.57 -15.85 16 15 C 0.54 16.36 7.85 87.66 0.69 17.05 16 16 O -0.56 -22.06 15.86 -3.04 -0.05 -22.11 16 17 C -0.11 -3.91 6.16 71.23 0.44 -3.48 16 18 S -0.18 -8.60 18.55 -56.49 -1.05 -9.64 16 19 C -0.53 -30.04 10.04 67.96 0.68 -29.35 16 20 H 0.06 3.74 8.03 -2.91 -0.02 3.72 16 21 C 0.04 2.54 5.50 84.86 0.47 3.00 16 22 N -0.92 -55.05 13.97 21.65 0.30 -54.75 16 23 Si 0.91 44.05 27.74 68.60 1.90 45.95 16 24 H -0.26 -12.21 7.11 99.48 0.71 -11.50 16 25 H -0.26 -11.88 7.11 99.48 0.71 -11.17 16 26 H -0.24 -11.32 6.74 99.48 0.67 -10.65 16 27 C 0.01 0.06 6.72 83.58 0.56 0.62 16 28 H 0.05 0.64 8.14 -2.39 -0.02 0.62 16 29 H 0.08 0.26 8.14 -2.39 -0.02 0.24 16 30 H 0.09 0.33 7.62 -2.39 -0.02 0.31 16 31 H 0.12 -0.34 8.14 -2.39 -0.02 -0.36 16 32 H 0.12 -0.27 8.14 -2.38 -0.02 -0.29 16 33 H 0.14 -0.88 7.41 -2.39 -0.02 -0.90 16 34 H 0.09 0.34 7.41 -2.39 -0.02 0.33 16 35 H 0.10 0.62 8.14 -2.39 -0.02 0.60 16 36 H 0.12 1.14 8.14 -2.38 -0.02 1.12 16 37 H 0.06 1.07 8.14 -2.39 -0.02 1.05 16 38 H 0.07 1.06 7.81 -2.38 -0.02 1.04 16 39 H 0.42 5.29 8.47 -92.71 -0.79 4.50 16 40 H 0.12 3.62 8.14 -2.39 -0.02 3.60 16 41 H 0.11 3.60 8.14 -2.40 -0.02 3.58 16 42 H 0.28 15.34 8.31 -92.71 -0.77 14.57 16 43 H 0.07 1.08 8.14 -2.39 -0.02 1.06 16 44 H 0.08 0.65 7.76 -2.39 -0.02 0.63 16 Total: -1.00 -85.18 383.62 -0.92 -86.09 By element: Atomic # 1 Polarization: 1.97 SS G_CDS: 0.20 Total: 2.17 kcal Atomic # 6 Polarization: -11.06 SS G_CDS: 6.87 Total: -4.19 kcal Atomic # 7 Polarization: -89.48 SS G_CDS: -8.80 Total: -98.28 kcal Atomic # 8 Polarization: -22.06 SS G_CDS: -0.05 Total: -22.11 kcal Atomic # 14 Polarization: 44.05 SS G_CDS: 1.90 Total: 45.95 kcal Atomic # 16 Polarization: -8.60 SS G_CDS: -1.05 Total: -9.64 kcal Total: -85.18 -0.92 -86.09 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001753402275.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 178.181 kcal (2) G-P(sol) polarization free energy of solvation -85.178 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 93.002 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.917 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -86.095 kcal (6) G-S(sol) free energy of system = (1) + (5) 92.086 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds