Wall clock time and date at job start Sat Apr 11 2020 06:00:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08998 * 109.47501 * 2 1 4 4 C 1.50702 * 109.47184 * 120.00094 * 2 1 3 5 5 N 1.31066 * 126.66013 * 74.97101 * 4 2 1 6 6 N 1.28844 * 107.99182 * 180.02562 * 5 4 2 7 7 N 1.28733 * 109.39482 * 0.02562 * 6 5 4 8 8 N 1.29021 * 108.81448 * 359.97438 * 7 6 5 9 9 C 1.46501 * 126.44361 * 180.02562 * 8 7 6 10 10 N 1.46897 * 109.47044 * 240.00088 * 2 1 3 11 11 C 1.47476 * 111.00199 * 155.97455 * 10 2 1 12 12 C 1.53514 * 87.93342 * 221.29587 * 11 10 2 13 13 C 1.52996 * 114.16938 * 139.66875 * 12 11 10 14 14 N 1.46506 * 109.47350 * 91.16119 * 13 12 11 15 15 C 1.34773 * 120.00092 * 179.97438 * 14 13 12 16 16 O 1.21277 * 120.00255 * 0.02562 * 15 14 13 17 17 C 1.50705 * 119.99700 * 179.97438 * 15 14 13 18 18 S 1.80999 * 109.46854 * 180.02562 * 17 15 14 19 19 C 1.76196 * 100.00109 * 180.02562 * 18 17 15 20 20 H 1.07999 * 119.99671 * 0.02562 * 19 18 17 21 21 C 1.38795 * 120.00240 * 180.02562 * 19 18 17 22 22 N 1.31627 * 120.00174 * 0.02562 * 21 19 18 23 23 Si 1.86804 * 119.99971 * 179.97438 * 21 19 18 24 24 H 1.48504 * 109.46809 * 60.00562 * 23 21 19 25 25 H 1.48501 * 109.46868 * 180.02562 * 23 21 19 26 26 H 1.48498 * 109.47411 * 300.00087 * 23 21 19 27 27 C 1.47474 * 111.00308 * 60.00176 * 10 2 1 28 28 H 1.08993 * 109.46869 * 59.99676 * 1 2 3 29 29 H 1.08996 * 109.46817 * 180.02562 * 1 2 3 30 30 H 1.09003 * 109.46724 * 300.00325 * 1 2 3 31 31 H 1.09000 * 109.46766 * 270.00339 * 9 8 7 32 32 H 1.09001 * 109.46794 * 30.00147 * 9 8 7 33 33 H 1.08999 * 109.46828 * 149.99993 * 9 8 7 34 34 H 1.09001 * 113.47690 * 336.06176 * 11 10 2 35 35 H 1.09001 * 113.48246 * 106.52789 * 11 10 2 36 36 H 1.08999 * 114.16769 * 272.37594 * 12 11 10 37 37 H 1.09006 * 109.47093 * 211.15467 * 13 12 11 38 38 H 1.09001 * 109.47486 * 331.15830 * 13 12 11 39 39 H 0.97003 * 119.99198 * 359.97438 * 14 13 12 40 40 H 1.08997 * 109.47104 * 300.00281 * 17 15 14 41 41 H 1.09005 * 109.46928 * 60.00728 * 17 15 14 42 42 H 0.97001 * 120.00373 * 179.97438 * 22 21 19 43 43 H 1.08999 * 113.47947 * 253.47144 * 27 10 2 44 44 H 1.09000 * 113.47365 * 23.87522 * 27 10 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0324 -0.7104 1.2305 5 7 2.0362 -2.0042 1.4404 6 7 2.5434 -2.2168 2.6055 7 7 2.8627 -1.0922 3.1445 8 7 2.5634 -0.1394 2.3276 9 6 2.7640 1.2944 2.5519 10 7 2.0196 -0.6925 -1.1994 11 6 3.3814 -0.2466 -1.5483 12 6 2.9446 -0.2470 -3.0199 13 6 3.4766 0.9359 -3.8316 14 7 4.7553 0.5707 -4.4463 15 6 5.4135 1.4625 -5.2130 16 8 4.9474 2.5675 -5.3938 17 6 6.7291 1.0870 -5.8448 18 16 7.3584 2.4863 -6.8051 19 6 8.8578 1.7898 -7.4142 20 1 9.1273 0.7768 -7.1543 21 6 9.6927 2.5430 -8.2279 22 7 9.3645 3.7779 -8.5443 23 14 11.2827 1.8048 -8.8731 24 1 10.9750 0.6029 -9.6893 25 1 11.9887 2.8062 -9.7122 26 1 12.1487 1.4186 -7.7302 27 6 1.5469 -0.0237 -2.4259 28 1 -0.3633 0.5139 -0.8899 29 1 -0.3633 -1.0276 0.0005 30 1 -0.3633 0.5139 0.8900 31 1 1.8777 1.7152 3.0268 32 1 3.6284 1.4434 3.1989 33 1 2.9350 1.7910 1.5968 34 1 3.6243 0.7455 -1.1677 35 1 4.1511 -0.9850 -1.3236 36 1 3.0682 -1.2066 -3.5219 37 1 2.7594 1.1936 -4.6109 38 1 3.6213 1.7925 -3.1733 39 1 5.1282 -0.3130 -4.3013 40 1 7.4463 0.8299 -5.0653 41 1 6.5847 0.2300 -6.5028 42 1 9.9481 4.3044 -9.1127 43 1 0.7616 -0.5733 -2.9450 44 1 1.2991 1.0276 -2.2792 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001753402276.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:00:29 Heat of formation + Delta-G solvation = 123.642549 kcal Electronic energy + Delta-G solvation = -26162.029270 eV Core-core repulsion = 22280.100738 eV Total energy + Delta-G solvation = -3881.928531 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.142 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -44.56636 -41.06880 -39.06498 -36.20836 -35.47119 -34.04443 -32.45392 -31.69941 -30.15460 -28.94056 -28.31672 -26.63550 -25.56438 -25.21063 -24.24226 -23.32061 -21.19553 -20.76004 -19.98004 -18.08771 -17.86419 -17.68767 -16.82007 -16.61756 -16.20383 -15.96529 -15.60989 -14.88900 -14.84710 -14.81830 -14.32774 -14.28133 -13.94149 -13.50265 -13.37695 -13.25683 -13.18352 -12.92670 -12.64217 -12.60541 -12.36522 -12.28543 -11.91128 -11.67569 -11.53676 -11.41116 -11.27806 -11.07181 -11.05770 -10.94564 -10.78829 -10.42575 -9.85466 -9.59055 -9.42742 -9.09008 -8.95995 -8.27807 -6.53327 -6.24125 -3.95069 0.78927 1.48498 1.89989 2.96127 3.03397 3.14528 3.21955 3.25622 3.28480 3.33563 3.60683 3.75508 3.94789 3.99451 4.18212 4.18775 4.24664 4.27658 4.54912 4.61333 4.64707 4.76153 4.80362 4.93420 5.03150 5.08670 5.11055 5.13676 5.19622 5.22143 5.32620 5.33257 5.46541 5.54470 5.58901 5.66423 5.70754 5.83364 5.86164 6.10721 6.34607 6.53622 7.56911 7.63356 8.25878 8.32591 8.54400 9.21214 10.83206 Molecular weight = 340.14amu Principal moments of inertia in cm(-1) A = 0.020302 B = 0.001780 C = 0.001721 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1378.817401 B =15725.356308 C =16267.911361 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.132 3.868 3 H 0.075 0.925 4 C 0.191 3.809 5 N -0.273 5.273 6 N -0.078 5.078 7 N -0.097 5.097 8 N -0.310 5.310 9 C 0.076 3.924 10 N -0.450 5.450 11 C -0.003 4.003 12 C -0.123 4.123 13 C 0.133 3.867 14 N -0.738 5.738 15 C 0.532 3.468 16 O -0.519 6.519 17 C -0.154 4.154 18 S -0.061 6.061 19 C -0.536 4.536 20 H 0.072 0.928 21 C 0.074 3.926 22 N -0.868 5.868 23 Si 0.919 3.081 24 H -0.274 1.274 25 H -0.283 1.283 26 H -0.274 1.274 27 C 0.011 3.989 28 H 0.078 0.922 29 H 0.079 0.921 30 H 0.064 0.936 31 H 0.100 0.900 32 H 0.110 0.890 33 H 0.103 0.897 34 H 0.073 0.927 35 H 0.089 0.911 36 H 0.114 0.886 37 H 0.072 0.928 38 H 0.065 0.935 39 H 0.400 0.600 40 H 0.089 0.911 41 H 0.090 0.910 42 H 0.269 0.731 43 H 0.098 0.902 44 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.722 -5.524 20.196 28.087 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C 0.020 3.980 3 H 0.092 0.908 4 C -0.088 4.088 5 N -0.122 5.122 6 N -0.072 5.072 7 N -0.082 5.082 8 N -0.112 5.112 9 C -0.066 4.066 10 N -0.173 5.173 11 C -0.132 4.132 12 C -0.142 4.142 13 C 0.008 3.992 14 N -0.393 5.393 15 C 0.318 3.682 16 O -0.393 6.393 17 C -0.305 4.305 18 S 0.166 5.834 19 C -0.684 4.684 20 H 0.090 0.910 21 C -0.136 4.136 22 N -0.503 5.503 23 Si 0.745 3.255 24 H -0.199 1.199 25 H -0.208 1.208 26 H -0.199 1.199 27 C -0.118 4.118 28 H 0.096 0.904 29 H 0.098 0.902 30 H 0.083 0.917 31 H 0.118 0.882 32 H 0.129 0.871 33 H 0.122 0.878 34 H 0.091 0.909 35 H 0.108 0.892 36 H 0.132 0.868 37 H 0.091 0.909 38 H 0.084 0.916 39 H 0.233 0.767 40 H 0.108 0.892 41 H 0.108 0.892 42 H 0.079 0.921 43 H 0.116 0.884 44 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -19.354 -5.368 20.757 28.883 hybrid contribution 1.871 -0.344 -0.390 1.942 sum -17.483 -5.712 20.367 27.442 Atomic orbital electron populations 1.21882 0.90968 1.04567 1.02984 1.20671 0.97364 0.94081 0.85927 0.90773 1.25786 0.99962 0.90522 0.92501 1.75083 1.16644 1.11352 1.09119 1.78695 1.11517 1.15294 1.01699 1.78908 1.19001 0.92386 1.17921 1.48469 1.40395 1.10410 1.11961 1.22444 1.05860 0.72706 1.05576 1.69080 1.04661 1.44182 0.99376 1.24099 0.93247 1.00494 0.95327 1.22968 0.96059 1.00435 0.94724 1.21218 0.85783 0.95667 0.96523 1.45989 1.22971 1.17626 1.52733 1.20320 0.85802 0.84402 0.77654 1.90700 1.67853 1.21252 1.59492 1.23535 0.96188 1.07155 1.03584 1.85370 1.24671 1.13632 1.59735 1.22824 1.07013 1.02358 1.36248 0.90957 1.24992 0.98430 0.94742 0.95411 1.70003 1.37461 1.08136 1.34706 0.86223 0.81664 0.78783 0.78832 1.19901 1.20806 1.19941 1.23841 0.97993 0.99104 0.90826 0.90351 0.90181 0.91744 0.88203 0.87139 0.87830 0.90919 0.89239 0.86764 0.90943 0.91646 0.76655 0.89240 0.89151 0.92116 0.88395 0.90351 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.64 9.07 37.16 0.34 -0.31 16 2 C 0.13 0.74 2.11 -68.86 -0.15 0.59 16 3 H 0.07 0.24 6.23 -51.93 -0.32 -0.09 16 4 C 0.19 1.63 6.82 -155.43 -1.06 0.57 16 5 N -0.27 -3.33 12.36 32.70 0.40 -2.93 16 6 N -0.08 -1.03 13.43 60.35 0.81 -0.22 16 7 N -0.10 -1.06 13.29 60.35 0.80 -0.25 16 8 N -0.31 -2.32 3.75 -65.03 -0.24 -2.56 16 9 C 0.08 0.16 11.21 59.85 0.67 0.83 16 10 N -0.45 -3.08 6.13 -238.03 -1.46 -4.54 16 11 C 0.00 -0.02 7.14 -7.56 -0.05 -0.07 16 12 C -0.12 -0.79 4.09 -90.09 -0.37 -1.16 16 13 C 0.13 1.23 5.58 -4.04 -0.02 1.21 16 14 N -0.74 -8.69 5.56 -60.29 -0.33 -9.03 16 15 C 0.53 9.31 7.85 -10.98 -0.09 9.22 16 16 O -0.52 -11.16 15.86 5.56 0.09 -11.08 16 17 C -0.15 -2.99 6.16 36.01 0.22 -2.77 16 18 S -0.06 -1.61 20.57 -107.50 -2.21 -3.82 16 19 C -0.54 -15.07 9.50 30.94 0.29 -14.78 16 20 H 0.07 1.92 7.80 -52.49 -0.41 1.51 16 21 C 0.07 2.08 5.49 -17.43 -0.10 1.98 16 22 N -0.87 -25.87 13.22 55.49 0.73 -25.13 16 23 Si 0.92 21.19 29.55 -169.99 -5.02 16.16 16 24 H -0.27 -6.16 7.11 56.52 0.40 -5.76 16 25 H -0.28 -6.41 7.11 56.52 0.40 -6.01 16 26 H -0.27 -6.17 7.11 56.52 0.40 -5.77 16 27 C 0.01 0.06 6.02 -7.56 -0.05 0.01 16 28 H 0.08 0.23 7.03 -51.93 -0.37 -0.13 16 29 H 0.08 0.50 8.14 -51.93 -0.42 0.07 16 30 H 0.06 0.22 8.14 -51.93 -0.42 -0.20 16 31 H 0.10 0.01 8.14 -51.93 -0.42 -0.41 16 32 H 0.11 0.14 8.14 -51.93 -0.42 -0.28 16 33 H 0.10 0.01 7.01 -51.93 -0.36 -0.36 16 34 H 0.07 0.42 7.27 -51.93 -0.38 0.04 16 35 H 0.09 0.71 8.14 -51.93 -0.42 0.29 16 36 H 0.11 0.74 8.14 -51.93 -0.42 0.32 16 37 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 38 H 0.07 0.64 7.81 -51.93 -0.41 0.23 16 39 H 0.40 3.67 8.47 -40.82 -0.35 3.32 16 40 H 0.09 1.60 8.14 -51.92 -0.42 1.18 16 41 H 0.09 1.62 8.14 -51.91 -0.42 1.20 16 42 H 0.27 7.47 8.31 -40.82 -0.34 7.13 16 43 H 0.10 0.46 8.14 -51.93 -0.42 0.04 16 44 H 0.08 0.30 7.62 -51.93 -0.40 -0.10 16 LS Contribution 385.07 15.07 5.80 5.80 Total: -1.00 -38.40 385.07 -7.34 -45.73 By element: Atomic # 1 Polarization: 2.88 SS G_CDS: -6.35 Total: -3.47 kcal Atomic # 6 Polarization: -4.32 SS G_CDS: -0.35 Total: -4.67 kcal Atomic # 7 Polarization: -45.37 SS G_CDS: 0.71 Total: -44.66 kcal Atomic # 8 Polarization: -11.16 SS G_CDS: 0.09 Total: -11.08 kcal Atomic # 14 Polarization: 21.19 SS G_CDS: -5.02 Total: 16.16 kcal Atomic # 16 Polarization: -1.61 SS G_CDS: -2.21 Total: -3.82 kcal Total LS contribution 5.80 Total: 5.80 kcal Total: -38.40 -7.34 -45.73 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001753402276.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 169.375 kcal (2) G-P(sol) polarization free energy of solvation -38.397 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 130.978 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.335 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.732 kcal (6) G-S(sol) free energy of system = (1) + (5) 123.643 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds