Wall clock time and date at job start Sat Apr 11 2020 06:00:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42894 * 1 3 3 C 1.35360 * 116.99891 * 2 1 4 4 N 1.30548 * 125.44428 * 180.31616 * 3 2 1 5 5 C 1.36334 * 108.38227 * 180.15670 * 4 3 2 6 6 C 1.47364 * 126.41311 * 179.86545 * 5 4 3 7 7 O 1.21623 * 119.99732 * 179.68672 * 6 5 4 8 8 N 1.34769 * 120.00277 * 359.68244 * 6 5 4 9 9 C 1.46500 * 120.00237 * 180.02562 * 8 6 5 10 10 C 1.53006 * 109.46998 * 180.02562 * 9 8 6 11 11 H 1.09000 * 109.47314 * 55.00214 * 10 9 8 12 12 C 1.52996 * 109.47102 * 295.00080 * 10 9 8 13 13 C 1.52997 * 109.46646 * 175.00104 * 10 9 8 14 14 N 1.46910 * 109.46732 * 185.00048 * 13 10 9 15 15 C 1.46904 * 110.99860 * 179.97438 * 14 13 10 16 16 C 1.50696 * 109.47219 * 179.97438 * 15 14 13 17 17 O 1.21293 * 119.99771 * 0.02562 * 16 15 14 18 18 N 1.34770 * 120.00202 * 180.02562 * 16 15 14 19 19 C 1.37093 * 120.00329 * 180.02562 * 18 16 15 20 20 H 1.08010 * 119.99970 * 359.97438 * 19 18 16 21 21 C 1.38954 * 120.00582 * 179.97438 * 19 18 16 22 22 N 1.31413 * 119.99555 * 359.97438 * 21 19 18 23 23 Si 1.86796 * 120.00183 * 179.97438 * 21 19 18 24 24 H 1.48507 * 109.47073 * 60.00003 * 23 21 19 25 25 H 1.48504 * 109.46787 * 179.97438 * 23 21 19 26 26 H 1.48501 * 109.47280 * 299.99922 * 23 21 19 27 27 C 1.35914 * 107.17083 * 359.59961 * 5 4 3 28 28 O 1.34203 * 125.44298 * 0.02801 * 3 2 1 29 29 H 1.09008 * 109.47554 * 59.99735 * 1 2 3 30 30 H 1.09003 * 109.47620 * 179.97438 * 1 2 3 31 31 H 1.09000 * 109.47212 * 299.99732 * 1 2 3 32 32 H 0.97010 * 119.99854 * 0.02562 * 8 6 5 33 33 H 1.08993 * 109.47452 * 60.00368 * 9 8 6 34 34 H 1.09000 * 109.47175 * 300.00158 * 9 8 6 35 35 H 1.09006 * 109.46822 * 299.99923 * 12 10 9 36 36 H 1.08997 * 109.47474 * 60.00037 * 12 10 9 37 37 H 1.09002 * 109.46922 * 180.02562 * 12 10 9 38 38 H 1.09007 * 109.47194 * 304.99526 * 13 10 9 39 39 H 1.08992 * 109.47477 * 65.00207 * 13 10 9 40 40 H 1.00892 * 110.99840 * 56.04653 * 14 13 10 41 41 H 1.09000 * 109.47171 * 300.00091 * 15 14 13 42 42 H 1.09004 * 109.46646 * 59.99788 * 15 14 13 43 43 H 0.97000 * 119.99939 * 359.97438 * 18 16 15 44 44 H 0.96994 * 119.99924 * 179.97438 * 22 21 19 45 45 H 1.08002 * 126.45698 * 180.26588 * 27 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0434 1.2061 0.0000 4 7 3.3347 1.3978 -0.0059 5 6 3.5700 2.7407 -0.0001 6 6 4.8891 3.3977 -0.0009 7 8 4.9638 4.6116 -0.0011 8 7 6.0127 2.6534 -0.0014 9 6 7.3240 3.3065 -0.0016 10 6 8.4237 2.2426 -0.0028 11 1 8.2746 1.5669 -0.8450 12 6 8.3669 1.4491 1.3040 13 6 9.7892 2.9210 -0.1288 14 7 10.8354 1.8967 -0.2504 15 6 12.1633 2.5126 -0.3742 16 6 13.2081 1.4335 -0.4958 17 8 12.8789 0.2662 -0.4814 18 7 14.5083 1.7654 -0.6207 19 6 15.4588 0.7838 -0.7319 20 1 15.1657 -0.2557 -0.7191 21 6 16.7994 1.1260 -0.8613 22 7 17.1560 2.3907 -0.8774 23 14 18.0945 -0.2117 -1.0121 24 1 17.8169 -1.0359 -2.2158 25 1 19.4368 0.4110 -1.1378 26 1 18.0592 -1.0734 0.1968 27 6 2.3602 3.3600 0.0005 28 8 1.4225 2.3959 0.0005 29 1 -0.3634 0.5139 -0.8900 30 1 -0.3634 -1.0277 -0.0005 31 1 -0.3634 0.5138 0.8900 32 1 5.9530 1.6851 -0.0016 33 1 7.4205 3.9282 0.8884 34 1 7.4199 3.9287 -0.8915 35 1 8.5161 2.1249 2.1462 36 1 7.3940 0.9659 1.3938 37 1 9.1506 0.6915 1.3033 38 1 9.7988 3.5569 -1.0141 39 1 9.9764 3.5281 0.7568 40 1 10.6492 1.2802 -1.0270 41 1 12.1890 3.1454 -1.2612 42 1 12.3671 3.1172 0.5096 43 1 14.7716 2.6990 -0.6327 44 1 18.0917 2.6296 -0.9673 45 1 2.1848 4.4257 0.0004 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001753626948.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:00:32 Heat of formation + Delta-G solvation = -82.435128 kcal Electronic energy + Delta-G solvation = -27765.158952 eV Core-core repulsion = 23399.248600 eV Total energy + Delta-G solvation = -4365.910352 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 340.163 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -43.96261 -39.96220 -39.30857 -38.34024 -37.18453 -35.45401 -34.87398 -33.82953 -32.27520 -31.16722 -30.62569 -28.04110 -27.39625 -27.04646 -25.12497 -24.13728 -23.10557 -22.62619 -21.03524 -20.62077 -19.47974 -19.06906 -18.04745 -17.87674 -17.65762 -16.92933 -16.42013 -15.98706 -15.88997 -15.78210 -15.66077 -15.29007 -14.70527 -14.61349 -14.30129 -14.13121 -13.90083 -13.61813 -13.38289 -13.18381 -12.91326 -12.59245 -12.53427 -12.34778 -11.91013 -11.64737 -11.53937 -11.48866 -11.30073 -11.10518 -11.04244 -10.94351 -10.83005 -10.53738 -10.42144 -10.18742 -9.47400 -9.41338 -9.14721 -8.42885 -8.01740 -7.92929 -6.39117 -3.79913 0.61896 1.38481 1.55616 2.19737 2.78612 2.92677 3.22232 3.27684 3.32239 3.94074 3.97516 4.12823 4.23934 4.33570 4.36777 4.39380 4.60092 4.75701 4.78469 4.86074 4.97839 4.99050 5.19990 5.24955 5.28875 5.38271 5.49776 5.60846 5.73647 5.79483 5.91023 5.97646 6.02203 6.05344 6.08282 6.24571 6.30360 6.46836 6.92209 7.23943 7.24976 7.57454 7.69168 7.82476 8.08885 8.64182 9.20466 9.57258 10.08893 10.78601 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.028030 B = 0.001428 C = 0.001370 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 998.697542 B =19609.967049 C =20429.696846 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.023 3.977 2 O -0.243 6.243 3 C 0.383 3.617 4 N -0.456 5.456 5 C -0.048 4.048 6 C 0.603 3.397 7 O -0.535 6.535 8 N -0.705 5.705 9 C 0.123 3.877 10 C -0.100 4.100 11 H 0.078 0.922 12 C -0.141 4.141 13 C 0.066 3.934 14 N -0.666 5.666 15 C 0.051 3.949 16 C 0.441 3.559 17 O -0.583 6.583 18 N -0.564 5.564 19 C -0.300 4.300 20 H 0.102 0.898 21 C 0.023 3.977 22 N -0.902 5.902 23 Si 0.931 3.069 24 H -0.274 1.274 25 H -0.285 1.285 26 H -0.273 1.273 27 C 0.005 3.995 28 O -0.225 6.225 29 H 0.068 0.932 30 H 0.121 0.879 31 H 0.068 0.932 32 H 0.412 0.588 33 H 0.074 0.926 34 H 0.071 0.929 35 H 0.053 0.947 36 H 0.046 0.954 37 H 0.077 0.923 38 H 0.029 0.971 39 H 0.075 0.925 40 H 0.349 0.651 41 H 0.043 0.957 42 H 0.086 0.914 43 H 0.392 0.608 44 H 0.272 0.728 45 H 0.237 0.763 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -34.095 3.047 1.686 34.273 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 O -0.151 6.151 3 C 0.137 3.863 4 N -0.201 5.201 5 C -0.167 4.167 6 C 0.388 3.612 7 O -0.413 6.413 8 N -0.356 5.356 9 C -0.001 4.001 10 C -0.120 4.120 11 H 0.096 0.904 12 C -0.199 4.199 13 C -0.064 4.064 14 N -0.298 5.298 15 C -0.082 4.082 16 C 0.226 3.774 17 O -0.468 6.468 18 N -0.201 5.201 19 C -0.430 4.430 20 H 0.120 0.880 21 C -0.179 4.179 22 N -0.544 5.544 23 Si 0.758 3.242 24 H -0.199 1.199 25 H -0.210 1.210 26 H -0.199 1.199 27 C -0.068 4.068 28 O -0.116 6.116 29 H 0.087 0.913 30 H 0.139 0.861 31 H 0.087 0.913 32 H 0.248 0.752 33 H 0.092 0.908 34 H 0.089 0.911 35 H 0.072 0.928 36 H 0.065 0.935 37 H 0.096 0.904 38 H 0.048 0.952 39 H 0.093 0.907 40 H 0.168 0.832 41 H 0.061 0.939 42 H 0.104 0.896 43 H 0.225 0.775 44 H 0.082 0.918 45 H 0.253 0.747 Dipole moment (debyes) X Y Z Total from point charges -33.538 2.373 2.349 33.704 hybrid contribution 0.027 0.428 -0.997 1.086 sum -33.511 2.801 1.351 33.655 Atomic orbital electron populations 1.23335 0.74909 1.05863 1.03061 1.86409 1.23808 1.15726 1.89138 1.23382 0.85597 0.79587 0.97770 1.71112 1.09825 1.15587 1.23612 1.21680 0.95875 0.88426 1.10675 1.16611 0.81956 0.85909 0.76770 1.90852 1.86749 1.12674 1.51005 1.45823 1.05326 1.11168 1.73329 1.21498 0.80459 0.95315 1.02787 1.21348 0.93429 0.96857 1.00320 0.90353 1.21770 1.01722 1.00720 0.95661 1.21893 0.90110 0.93608 1.00764 1.60043 1.00075 1.18821 1.50871 1.21665 0.89394 0.96124 1.00999 1.19817 0.83477 0.89707 0.84361 1.90520 1.80922 1.19650 1.55675 1.41854 1.04699 1.09718 1.63783 1.19661 0.86040 0.90265 1.47015 0.87983 1.25256 0.98182 0.97116 0.97348 1.69605 1.18434 1.15998 1.50316 0.85918 0.79035 0.80189 0.79064 1.19944 1.20995 1.19889 1.24991 0.84890 0.93847 1.03049 1.84404 1.39528 1.15885 1.71805 0.91323 0.86130 0.91309 0.75158 0.90777 0.91066 0.92790 0.93494 0.90361 0.95240 0.90690 0.83207 0.93882 0.89591 0.77458 0.91845 0.74685 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.05 10.73 101.05 1.08 1.14 16 2 O -0.24 -1.72 10.55 -41.00 -0.43 -2.15 16 3 C 0.38 3.31 8.98 52.22 0.47 3.78 16 4 N -0.46 -4.74 11.10 -11.71 -0.13 -4.87 16 5 C -0.05 -0.47 6.99 -82.99 -0.58 -1.05 16 6 C 0.60 6.71 7.81 -12.55 -0.10 6.61 16 7 O -0.54 -7.16 16.89 5.26 0.09 -7.07 16 8 N -0.71 -7.02 5.28 -61.40 -0.32 -7.35 16 9 C 0.12 1.20 5.06 -4.04 -0.02 1.18 16 10 C -0.10 -1.02 2.57 -90.62 -0.23 -1.25 16 11 H 0.08 0.80 8.14 -51.93 -0.42 0.37 16 12 C -0.14 -1.53 8.95 37.16 0.33 -1.20 16 13 C 0.07 0.78 5.07 -3.82 -0.02 0.77 16 14 N -0.67 -10.46 5.58 -115.05 -0.64 -11.11 16 15 C 0.05 0.89 6.17 -4.98 -0.03 0.86 16 16 C 0.44 10.46 7.82 -10.99 -0.09 10.37 16 17 O -0.58 -15.90 15.78 5.55 0.09 -15.81 16 18 N -0.56 -14.40 5.29 -10.96 -0.06 -14.46 16 19 C -0.30 -8.45 9.68 -14.93 -0.14 -8.59 16 20 H 0.10 3.00 7.16 -52.48 -0.38 2.63 16 21 C 0.02 0.61 5.50 -17.47 -0.10 0.51 16 22 N -0.90 -24.69 13.05 55.50 0.72 -23.97 16 23 Si 0.93 21.20 29.55 -169.99 -5.02 16.17 16 24 H -0.27 -6.19 7.11 56.52 0.40 -5.79 16 25 H -0.28 -6.32 7.11 56.52 0.40 -5.91 16 26 H -0.27 -6.20 7.11 56.52 0.40 -5.80 16 27 C 0.00 0.03 11.93 29.90 0.36 0.39 16 28 O -0.23 -1.61 10.20 -17.77 -0.18 -1.79 16 29 H 0.07 0.11 8.14 -51.92 -0.42 -0.31 16 30 H 0.12 0.01 8.14 -51.93 -0.42 -0.41 16 31 H 0.07 0.11 8.14 -51.93 -0.42 -0.32 16 32 H 0.41 3.83 7.38 -40.82 -0.30 3.53 16 33 H 0.07 0.75 8.14 -51.93 -0.42 0.32 16 34 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 35 H 0.05 0.58 8.14 -51.93 -0.42 0.16 16 36 H 0.05 0.45 7.18 -51.93 -0.37 0.08 16 37 H 0.08 1.03 7.75 -51.93 -0.40 0.62 16 38 H 0.03 0.33 8.14 -51.93 -0.42 -0.10 16 39 H 0.07 0.86 8.14 -51.93 -0.42 0.44 16 40 H 0.35 5.67 8.43 -39.30 -0.33 5.34 16 41 H 0.04 0.69 8.14 -51.93 -0.42 0.26 16 42 H 0.09 1.40 8.14 -51.93 -0.42 0.98 16 43 H 0.39 9.57 7.90 -40.82 -0.32 9.25 16 44 H 0.27 7.06 8.31 -40.82 -0.34 6.72 16 45 H 0.24 0.93 8.06 -52.49 -0.42 0.51 16 LS Contribution 393.58 15.07 5.93 5.93 Total: -1.00 -34.75 393.58 -5.34 -40.08 By element: Atomic # 1 Polarization: 19.18 SS G_CDS: -6.31 Total: 12.86 kcal Atomic # 6 Polarization: 12.58 SS G_CDS: 0.93 Total: 13.52 kcal Atomic # 7 Polarization: -61.33 SS G_CDS: -0.43 Total: -61.76 kcal Atomic # 8 Polarization: -26.38 SS G_CDS: -0.44 Total: -26.82 kcal Atomic # 14 Polarization: 21.20 SS G_CDS: -5.02 Total: 16.17 kcal Total LS contribution 5.93 Total: 5.93 kcal Total: -34.75 -5.34 -40.08 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001753626948.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -42.351 kcal (2) G-P(sol) polarization free energy of solvation -34.745 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -77.096 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.339 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.084 kcal (6) G-S(sol) free energy of system = (1) + (5) -82.435 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds