Wall clock time and date at job start Sat Apr 11 2020 06:00:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42894 * 1 3 3 C 1.35360 * 116.99891 * 2 1 4 4 N 1.30548 * 125.44428 * 180.31616 * 3 2 1 5 5 C 1.36334 * 108.38227 * 180.15670 * 4 3 2 6 6 C 1.47364 * 126.41311 * 179.86545 * 5 4 3 7 7 O 1.21623 * 119.99732 * 179.68672 * 6 5 4 8 8 N 1.34769 * 120.00277 * 359.68244 * 6 5 4 9 9 C 1.46500 * 120.00237 * 180.02562 * 8 6 5 10 10 C 1.53006 * 109.46998 * 180.02562 * 9 8 6 11 11 H 1.09000 * 109.47314 * 55.00214 * 10 9 8 12 12 C 1.52996 * 109.47102 * 295.00080 * 10 9 8 13 13 C 1.52997 * 109.46646 * 175.00104 * 10 9 8 14 14 N 1.46910 * 109.46732 * 185.00048 * 13 10 9 15 15 C 1.46904 * 110.99860 * 179.97438 * 14 13 10 16 16 C 1.50696 * 109.47219 * 179.97438 * 15 14 13 17 17 O 1.21293 * 119.99771 * 0.02562 * 16 15 14 18 18 N 1.34770 * 120.00202 * 180.02562 * 16 15 14 19 19 C 1.37093 * 120.00329 * 180.02562 * 18 16 15 20 20 H 1.08010 * 119.99970 * 359.97438 * 19 18 16 21 21 C 1.38954 * 120.00582 * 179.97438 * 19 18 16 22 22 N 1.31413 * 119.99555 * 359.97438 * 21 19 18 23 23 Si 1.86796 * 120.00183 * 179.97438 * 21 19 18 24 24 H 1.48507 * 109.47073 * 60.00003 * 23 21 19 25 25 H 1.48504 * 109.46787 * 179.97438 * 23 21 19 26 26 H 1.48501 * 109.47280 * 299.99922 * 23 21 19 27 27 C 1.35914 * 107.17083 * 359.59961 * 5 4 3 28 28 O 1.34203 * 125.44298 * 0.02801 * 3 2 1 29 29 H 1.09008 * 109.47554 * 59.99735 * 1 2 3 30 30 H 1.09003 * 109.47620 * 179.97438 * 1 2 3 31 31 H 1.09000 * 109.47212 * 299.99732 * 1 2 3 32 32 H 0.97010 * 119.99854 * 0.02562 * 8 6 5 33 33 H 1.08993 * 109.47452 * 60.00368 * 9 8 6 34 34 H 1.09000 * 109.47175 * 300.00158 * 9 8 6 35 35 H 1.09006 * 109.46822 * 299.99923 * 12 10 9 36 36 H 1.08997 * 109.47474 * 60.00037 * 12 10 9 37 37 H 1.09002 * 109.46922 * 180.02562 * 12 10 9 38 38 H 1.09007 * 109.47194 * 304.99526 * 13 10 9 39 39 H 1.08992 * 109.47477 * 65.00207 * 13 10 9 40 40 H 1.00892 * 110.99840 * 56.04653 * 14 13 10 41 41 H 1.09000 * 109.47171 * 300.00091 * 15 14 13 42 42 H 1.09004 * 109.46646 * 59.99788 * 15 14 13 43 43 H 0.97000 * 119.99939 * 359.97438 * 18 16 15 44 44 H 0.96994 * 119.99924 * 179.97438 * 22 21 19 45 45 H 1.08002 * 126.45698 * 180.26588 * 27 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0434 1.2061 0.0000 4 7 3.3347 1.3978 -0.0059 5 6 3.5700 2.7407 -0.0001 6 6 4.8891 3.3977 -0.0009 7 8 4.9638 4.6116 -0.0011 8 7 6.0127 2.6534 -0.0014 9 6 7.3240 3.3065 -0.0016 10 6 8.4237 2.2426 -0.0028 11 1 8.2746 1.5669 -0.8450 12 6 8.3669 1.4491 1.3040 13 6 9.7892 2.9210 -0.1288 14 7 10.8354 1.8967 -0.2504 15 6 12.1633 2.5126 -0.3742 16 6 13.2081 1.4335 -0.4958 17 8 12.8789 0.2662 -0.4814 18 7 14.5083 1.7654 -0.6207 19 6 15.4588 0.7838 -0.7319 20 1 15.1657 -0.2557 -0.7191 21 6 16.7994 1.1260 -0.8613 22 7 17.1560 2.3907 -0.8774 23 14 18.0945 -0.2117 -1.0121 24 1 17.8169 -1.0359 -2.2158 25 1 19.4368 0.4110 -1.1378 26 1 18.0592 -1.0734 0.1968 27 6 2.3602 3.3600 0.0005 28 8 1.4225 2.3959 0.0005 29 1 -0.3634 0.5139 -0.8900 30 1 -0.3634 -1.0277 -0.0005 31 1 -0.3634 0.5138 0.8900 32 1 5.9530 1.6851 -0.0016 33 1 7.4205 3.9282 0.8884 34 1 7.4199 3.9287 -0.8915 35 1 8.5161 2.1249 2.1462 36 1 7.3940 0.9659 1.3938 37 1 9.1506 0.6915 1.3033 38 1 9.7988 3.5569 -1.0141 39 1 9.9764 3.5281 0.7568 40 1 10.6492 1.2802 -1.0270 41 1 12.1890 3.1454 -1.2612 42 1 12.3671 3.1172 0.5096 43 1 14.7716 2.6990 -0.6327 44 1 18.0917 2.6296 -0.9673 45 1 2.1848 4.4257 0.0004 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001753626948.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:00:31 Heat of formation + Delta-G solvation = -113.912190 kcal Electronic energy + Delta-G solvation = -27766.523900 eV Core-core repulsion = 23399.248600 eV Total energy + Delta-G solvation = -4367.275300 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 340.163 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -44.56324 -40.77598 -40.14056 -39.78004 -38.26945 -36.21734 -36.07514 -35.62373 -33.42343 -33.11141 -31.22121 -28.83755 -28.32023 -27.87330 -26.65812 -25.25898 -24.08255 -23.33453 -21.79813 -21.53305 -20.97283 -20.05277 -19.82534 -18.60419 -18.40389 -17.78020 -17.44827 -17.03986 -16.97163 -16.58021 -16.42840 -16.35845 -16.02154 -15.96741 -15.47199 -15.32453 -15.16830 -14.70844 -14.46940 -14.36147 -13.92304 -13.55106 -13.39326 -13.15411 -13.10664 -13.01215 -12.95262 -12.82398 -12.42001 -12.12254 -12.11618 -12.00962 -11.97997 -11.94099 -11.71163 -11.48645 -11.40930 -10.32522 -10.21567 -10.00128 -9.76273 -9.26700 -8.45234 -5.94051 0.00062 0.86320 0.87917 1.40952 1.42635 1.53647 1.68681 2.05626 2.07480 2.15575 2.30781 2.96096 3.22195 3.34390 3.54747 3.73178 3.87750 3.97297 4.06819 4.12433 4.20700 4.24624 4.35273 4.41353 4.50312 4.51961 4.60289 4.64136 4.65263 4.66174 4.78600 4.84882 4.98335 5.09418 5.22605 5.38706 5.41931 5.52772 5.58123 5.90776 6.12609 6.24886 6.44152 6.53391 6.61811 7.02025 7.13985 7.58075 8.13494 8.71940 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.028030 B = 0.001428 C = 0.001370 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 998.697542 B =19609.967049 C =20429.696846 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.014 3.986 2 O -0.258 6.258 3 C 0.381 3.619 4 N -0.484 5.484 5 C -0.079 4.079 6 C 0.603 3.397 7 O -0.563 6.563 8 N -0.702 5.702 9 C 0.130 3.870 10 C -0.089 4.089 11 H 0.080 0.920 12 C -0.137 4.137 13 C 0.068 3.932 14 N -0.678 5.678 15 C 0.065 3.935 16 C 0.437 3.563 17 O -0.623 6.623 18 N -0.573 5.573 19 C -0.336 4.336 20 H 0.079 0.921 21 C -0.012 4.012 22 N -0.920 5.920 23 Si 0.993 3.007 24 H -0.272 1.272 25 H -0.270 1.270 26 H -0.272 1.272 27 C 0.029 3.971 28 O -0.216 6.216 29 H 0.077 0.923 30 H 0.144 0.856 31 H 0.077 0.923 32 H 0.415 0.585 33 H 0.074 0.926 34 H 0.073 0.927 35 H 0.054 0.946 36 H 0.056 0.944 37 H 0.053 0.947 38 H 0.045 0.955 39 H 0.082 0.918 40 H 0.344 0.656 41 H 0.067 0.933 42 H 0.104 0.896 43 H 0.396 0.604 44 H 0.278 0.722 45 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -35.420 3.738 1.610 35.653 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.080 4.080 2 O -0.166 6.166 3 C 0.135 3.865 4 N -0.231 5.231 5 C -0.197 4.197 6 C 0.389 3.611 7 O -0.443 6.443 8 N -0.352 5.352 9 C 0.006 3.994 10 C -0.108 4.108 11 H 0.098 0.902 12 C -0.194 4.194 13 C -0.061 4.061 14 N -0.311 5.311 15 C -0.067 4.067 16 C 0.225 3.775 17 O -0.510 6.510 18 N -0.211 5.211 19 C -0.466 4.466 20 H 0.097 0.903 21 C -0.212 4.212 22 N -0.561 5.561 23 Si 0.816 3.184 24 H -0.197 1.197 25 H -0.195 1.195 26 H -0.198 1.198 27 C -0.043 4.043 28 O -0.107 6.107 29 H 0.096 0.904 30 H 0.162 0.838 31 H 0.096 0.904 32 H 0.252 0.748 33 H 0.092 0.908 34 H 0.091 0.909 35 H 0.073 0.927 36 H 0.075 0.925 37 H 0.072 0.928 38 H 0.063 0.937 39 H 0.100 0.900 40 H 0.162 0.838 41 H 0.085 0.915 42 H 0.122 0.878 43 H 0.230 0.770 44 H 0.087 0.913 45 H 0.283 0.717 Dipole moment (debyes) X Y Z Total from point charges -34.882 3.074 2.277 35.091 hybrid contribution 0.299 0.189 -0.960 1.023 sum -34.583 3.264 1.317 34.762 Atomic orbital electron populations 1.23704 0.72581 1.07754 1.03948 1.86423 1.26175 1.15042 1.88917 1.23461 0.85514 0.80313 0.97233 1.71010 1.11098 1.16130 1.24861 1.21574 0.96045 0.88653 1.13378 1.16770 0.82568 0.85623 0.76122 1.90827 1.87232 1.13662 1.52580 1.45808 1.05267 1.11299 1.72862 1.21401 0.80159 0.94934 1.02870 1.21213 0.92841 0.96783 0.99969 0.90192 1.21702 1.01369 1.00195 0.96129 1.21958 0.89467 0.92943 1.01735 1.60037 1.00125 1.20071 1.50844 1.21524 0.88335 0.94024 1.02833 1.20911 0.83878 0.90631 0.82094 1.90489 1.81602 1.21974 1.56903 1.41926 1.05238 1.09437 1.64472 1.19648 0.87523 0.90002 1.49402 0.90327 1.26031 0.99467 0.99390 0.96291 1.69666 1.19185 1.17238 1.50016 0.84993 0.76844 0.77609 0.78905 1.19695 1.19467 1.19766 1.25606 0.84007 0.94808 0.99910 1.84440 1.39185 1.15564 1.71478 0.90437 0.83796 0.90404 0.74824 0.90796 0.90878 0.92655 0.92513 0.92763 0.93730 0.89995 0.83768 0.91545 0.87832 0.76972 0.91308 0.71680 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.04 10.73 113.37 1.22 1.26 16 2 O -0.26 -3.39 10.55 -64.30 -0.68 -4.07 16 3 C 0.38 6.27 8.98 130.43 1.17 7.44 16 4 N -0.48 -9.90 11.10 -419.38 -4.65 -14.56 16 5 C -0.08 -1.48 6.99 40.31 0.28 -1.20 16 6 C 0.60 13.06 7.81 86.65 0.68 13.74 16 7 O -0.56 -14.65 16.89 -4.10 -0.07 -14.72 16 8 N -0.70 -13.52 5.28 -466.43 -2.46 -15.98 16 9 C 0.13 2.39 5.06 86.38 0.44 2.82 16 10 C -0.09 -1.71 2.57 -10.79 -0.03 -1.74 16 11 H 0.08 1.55 8.14 -2.39 -0.02 1.53 16 12 C -0.14 -2.89 8.95 71.98 0.64 -2.24 16 13 C 0.07 1.49 5.07 86.30 0.44 1.93 16 14 N -0.68 -20.72 5.58 -517.91 -2.89 -23.61 16 15 C 0.07 2.21 6.17 85.55 0.53 2.74 16 16 C 0.44 20.92 7.82 87.66 0.69 21.60 16 17 O -0.62 -34.74 15.78 -3.07 -0.05 -34.79 16 18 N -0.57 -29.68 5.29 -306.99 -1.62 -31.30 16 19 C -0.34 -19.29 9.68 84.04 0.81 -18.47 16 20 H 0.08 4.79 7.16 -2.91 -0.02 4.77 16 21 C -0.01 -0.65 5.50 84.93 0.47 -0.18 16 22 N -0.92 -49.97 13.05 21.66 0.28 -49.68 16 23 Si 0.99 43.24 29.55 68.60 2.03 45.27 16 24 H -0.27 -11.67 7.11 99.48 0.71 -10.97 16 25 H -0.27 -11.06 7.11 99.48 0.71 -10.35 16 26 H -0.27 -11.76 7.11 99.48 0.71 -11.05 16 27 C 0.03 0.37 11.93 67.28 0.80 1.17 16 28 O -0.22 -2.73 10.20 18.83 0.19 -2.54 16 29 H 0.08 0.11 8.14 -2.38 -0.02 0.09 16 30 H 0.14 -0.27 8.14 -2.39 -0.02 -0.29 16 31 H 0.08 0.11 8.14 -2.39 -0.02 0.09 16 32 H 0.41 7.54 7.38 -92.70 -0.68 6.86 16 33 H 0.07 1.39 8.14 -2.39 -0.02 1.37 16 34 H 0.07 1.35 8.14 -2.39 -0.02 1.33 16 35 H 0.05 1.14 8.14 -2.38 -0.02 1.12 16 36 H 0.06 1.07 7.18 -2.39 -0.02 1.05 16 37 H 0.05 1.42 7.75 -2.39 -0.02 1.40 16 38 H 0.04 0.88 8.14 -2.38 -0.02 0.86 16 39 H 0.08 1.71 8.14 -2.39 -0.02 1.69 16 40 H 0.34 11.07 8.43 -89.70 -0.76 10.31 16 41 H 0.07 1.98 8.14 -2.39 -0.02 1.96 16 42 H 0.10 3.19 8.14 -2.39 -0.02 3.17 16 43 H 0.40 19.45 7.90 -92.71 -0.73 18.72 16 44 H 0.28 14.14 8.31 -92.71 -0.77 13.37 16 45 H 0.27 1.42 8.06 -2.91 -0.02 1.39 16 Total: -1.00 -75.79 393.58 -2.90 -78.70 By element: Atomic # 1 Polarization: 39.53 SS G_CDS: -1.12 Total: 38.42 kcal Atomic # 6 Polarization: 20.74 SS G_CDS: 8.14 Total: 28.87 kcal Atomic # 7 Polarization: -123.78 SS G_CDS: -11.35 Total: -135.13 kcal Atomic # 8 Polarization: -55.52 SS G_CDS: -0.60 Total: -56.13 kcal Atomic # 14 Polarization: 43.24 SS G_CDS: 2.03 Total: 45.27 kcal Total: -75.79 -2.90 -78.70 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001753626948.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -35.215 kcal (2) G-P(sol) polarization free energy of solvation -75.793 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -111.008 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.904 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.697 kcal (6) G-S(sol) free energy of system = (1) + (5) -113.912 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds