Wall clock time and date at job start Sat Apr 11 2020 06:00:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42904 * 1 3 3 C 1.35344 * 117.00055 * 2 1 4 4 N 1.30554 * 125.44602 * 180.32173 * 3 2 1 5 5 C 1.36331 * 108.38222 * 180.15079 * 4 3 2 6 6 C 1.47370 * 126.41496 * 179.85828 * 5 4 3 7 7 O 1.21617 * 120.00275 * 179.68728 * 6 5 4 8 8 N 1.34781 * 119.99685 * 359.69254 * 6 5 4 9 9 C 1.46497 * 120.00055 * 179.97438 * 8 6 5 10 10 C 1.52993 * 109.47162 * 180.02562 * 9 8 6 11 11 H 1.09002 * 109.47076 * 304.99867 * 10 9 8 12 12 C 1.53004 * 109.47412 * 64.99947 * 10 9 8 13 13 C 1.53006 * 109.47268 * 185.00067 * 10 9 8 14 14 N 1.46898 * 109.47138 * 174.99901 * 13 10 9 15 15 C 1.46906 * 110.99888 * 180.02562 * 14 13 10 16 16 C 1.50699 * 109.47140 * 179.97438 * 15 14 13 17 17 O 1.21289 * 119.99678 * 0.02562 * 16 15 14 18 18 N 1.34777 * 119.99614 * 180.02562 * 16 15 14 19 19 C 1.37097 * 119.99518 * 180.02562 * 18 16 15 20 20 H 1.07996 * 120.00466 * 359.97438 * 19 18 16 21 21 C 1.38949 * 120.00085 * 179.97438 * 19 18 16 22 22 N 1.31416 * 119.99807 * 359.97438 * 21 19 18 23 23 Si 1.86803 * 120.00303 * 179.97438 * 21 19 18 24 24 H 1.48500 * 109.46922 * 90.00327 * 23 21 19 25 25 H 1.48500 * 109.47032 * 210.00074 * 23 21 19 26 26 H 1.48489 * 109.47076 * 330.00276 * 23 21 19 27 27 C 1.35920 * 107.17547 * 359.60090 * 5 4 3 28 28 O 1.34206 * 125.44714 * 0.02562 * 3 2 1 29 29 H 1.08998 * 109.47256 * 59.99490 * 1 2 3 30 30 H 1.08998 * 109.46994 * 180.02562 * 1 2 3 31 31 H 1.09004 * 109.46785 * 299.99976 * 1 2 3 32 32 H 0.96998 * 120.00074 * 0.02562 * 8 6 5 33 33 H 1.09005 * 109.46785 * 59.99797 * 9 8 6 34 34 H 1.09001 * 109.46833 * 299.99849 * 9 8 6 35 35 H 1.09001 * 109.47106 * 179.97438 * 12 10 9 36 36 H 1.09000 * 109.46646 * 300.00184 * 12 10 9 37 37 H 1.08997 * 109.46495 * 60.00353 * 12 10 9 38 38 H 1.08997 * 109.46770 * 54.99847 * 13 10 9 39 39 H 1.08995 * 109.47019 * 295.00060 * 13 10 9 40 40 H 1.00901 * 111.00121 * 56.04666 * 14 13 10 41 41 H 1.09004 * 109.47040 * 299.99934 * 15 14 13 42 42 H 1.09000 * 109.47033 * 59.99886 * 15 14 13 43 43 H 0.96996 * 120.00269 * 359.97438 * 18 16 15 44 44 H 0.97002 * 120.00022 * 179.97438 * 22 21 19 45 45 H 1.07997 * 126.45605 * 180.26246 * 27 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0435 1.2059 0.0000 4 7 3.3349 1.3977 -0.0060 5 6 3.5701 2.7405 -0.0003 6 6 4.8893 3.3976 -0.0011 7 8 4.9640 4.6114 -0.0013 8 7 6.0129 2.6531 -0.0017 9 6 7.3242 3.3062 -0.0030 10 6 8.4237 2.2424 -0.0041 11 1 8.2758 1.5662 0.8379 12 6 8.3651 1.4495 -1.3113 13 6 9.7897 2.9205 0.1202 14 7 10.8358 1.8962 0.2397 15 6 12.1640 2.5120 0.3619 16 6 13.2088 1.4328 0.4826 17 8 12.8795 0.2655 0.4678 18 7 14.5092 1.7647 0.6071 19 6 15.4597 0.7829 0.7164 20 1 15.1666 -0.2565 0.7032 21 6 16.8004 1.1250 0.8441 22 7 17.1572 2.3897 0.8596 23 14 18.0956 -0.2128 0.9939 24 1 18.5772 -0.5891 -0.3595 25 1 19.2351 0.2898 1.8027 26 1 17.5042 -1.4023 1.6573 27 6 2.3603 3.3600 0.0003 28 8 1.4227 2.3958 0.0005 29 1 -0.3634 0.5139 -0.8899 30 1 -0.3633 -1.0276 0.0005 31 1 -0.3633 0.5139 0.8900 32 1 5.9532 1.6850 -0.0020 33 1 7.4210 3.9286 0.8866 34 1 7.4196 3.9277 -0.8934 35 1 9.1488 0.6919 -1.3122 36 1 7.3920 0.9664 -1.3998 37 1 8.5131 2.1258 -2.1533 38 1 9.8005 3.5559 1.0058 39 1 9.9755 3.5282 -0.7653 40 1 10.8045 1.2548 -0.5387 41 1 12.3666 3.1171 -0.5218 42 1 12.1910 3.1443 1.2493 43 1 14.7725 2.6982 0.6185 44 1 18.0931 2.6285 0.9492 45 1 2.1850 4.4256 0.0003 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001753626949.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:00:35 Heat of formation + Delta-G solvation = -82.171882 kcal Electronic energy + Delta-G solvation = -27770.204638 eV Core-core repulsion = 23404.305701 eV Total energy + Delta-G solvation = -4365.898937 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 340.163 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -43.96126 -39.96680 -39.31031 -38.36235 -37.23624 -35.45319 -34.87742 -33.83456 -32.25454 -31.16472 -30.62525 -28.04180 -27.38598 -27.18349 -25.18720 -24.14890 -23.12953 -22.62595 -21.04738 -20.47698 -19.46240 -19.09764 -18.04698 -17.88881 -17.65808 -16.92949 -16.58877 -15.96033 -15.90413 -15.79810 -15.63802 -15.37761 -14.72898 -14.50336 -14.28915 -14.14299 -13.92258 -13.67921 -13.39306 -12.94500 -12.91236 -12.79671 -12.59625 -12.53900 -12.03539 -11.56984 -11.53042 -11.51598 -11.30086 -11.17153 -11.04955 -10.92611 -10.85246 -10.54904 -10.37340 -10.19312 -9.48492 -9.41423 -9.14655 -8.43092 -8.02649 -7.93100 -6.39271 -3.80030 0.61996 1.38599 1.55680 2.19753 2.78583 2.92730 3.19815 3.28333 3.34573 3.93860 3.97527 4.13076 4.24024 4.34186 4.36836 4.39463 4.60019 4.75738 4.77354 4.82819 4.92698 4.98640 5.16565 5.24331 5.28226 5.40746 5.45726 5.56709 5.64305 5.79056 5.83042 5.89869 6.02011 6.05042 6.08048 6.17537 6.24605 6.30850 6.92262 7.24534 7.24948 7.57621 7.70079 7.82459 8.09048 8.64072 9.20448 9.57164 10.08715 10.78498 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.028017 B = 0.001427 C = 0.001370 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 999.147744 B =19611.155991 C =20430.235252 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.023 3.977 2 O -0.243 6.243 3 C 0.383 3.617 4 N -0.456 5.456 5 C -0.048 4.048 6 C 0.603 3.397 7 O -0.535 6.535 8 N -0.706 5.706 9 C 0.124 3.876 10 C -0.102 4.102 11 H 0.091 0.909 12 C -0.154 4.154 13 C 0.067 3.933 14 N -0.668 5.668 15 C 0.050 3.950 16 C 0.441 3.559 17 O -0.583 6.583 18 N -0.564 5.564 19 C -0.300 4.300 20 H 0.103 0.897 21 C 0.022 3.978 22 N -0.902 5.902 23 Si 0.930 3.070 24 H -0.278 1.278 25 H -0.284 1.284 26 H -0.270 1.270 27 C 0.005 3.995 28 O -0.225 6.225 29 H 0.068 0.932 30 H 0.121 0.879 31 H 0.068 0.932 32 H 0.412 0.588 33 H 0.074 0.926 34 H 0.072 0.928 35 H 0.067 0.933 36 H 0.056 0.944 37 H 0.054 0.946 38 H 0.074 0.926 39 H 0.030 0.970 40 H 0.349 0.651 41 H 0.043 0.957 42 H 0.086 0.914 43 H 0.392 0.608 44 H 0.271 0.729 45 H 0.237 0.763 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -34.045 3.048 -3.365 34.346 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 O -0.151 6.151 3 C 0.137 3.863 4 N -0.201 5.201 5 C -0.167 4.167 6 C 0.388 3.612 7 O -0.413 6.413 8 N -0.357 5.357 9 C 0.000 4.000 10 C -0.121 4.121 11 H 0.109 0.891 12 C -0.211 4.211 13 C -0.063 4.063 14 N -0.302 5.302 15 C -0.082 4.082 16 C 0.226 3.774 17 O -0.468 6.468 18 N -0.201 5.201 19 C -0.429 4.429 20 H 0.121 0.879 21 C -0.179 4.179 22 N -0.543 5.543 23 Si 0.757 3.243 24 H -0.205 1.205 25 H -0.209 1.209 26 H -0.194 1.194 27 C -0.068 4.068 28 O -0.116 6.116 29 H 0.087 0.913 30 H 0.139 0.861 31 H 0.087 0.913 32 H 0.248 0.752 33 H 0.092 0.908 34 H 0.090 0.910 35 H 0.086 0.914 36 H 0.075 0.925 37 H 0.073 0.927 38 H 0.093 0.907 39 H 0.049 0.951 40 H 0.170 0.830 41 H 0.061 0.939 42 H 0.104 0.896 43 H 0.226 0.774 44 H 0.081 0.919 45 H 0.253 0.747 Dipole moment (debyes) X Y Z Total from point charges -33.626 2.388 -2.684 33.818 hybrid contribution 0.218 0.391 -0.797 0.914 sum -33.408 2.779 -3.482 33.704 Atomic orbital electron populations 1.23336 0.74902 1.05862 1.03062 1.86407 1.23811 1.15732 1.89132 1.23380 0.85597 0.79585 0.97770 1.71113 1.09823 1.15585 1.23618 1.21682 0.95875 0.88427 1.10677 1.16611 0.81952 0.85906 0.76762 1.90851 1.86743 1.12676 1.50986 1.45824 1.05330 1.11161 1.73358 1.21479 0.80403 0.95266 1.02822 1.21372 0.93621 0.97144 1.00007 0.89106 1.21913 1.02304 1.00473 0.96413 1.21874 0.90201 0.93711 1.00557 1.60080 1.01968 1.17382 1.50767 1.21672 0.89056 0.96255 1.01254 1.19822 0.83379 0.89703 0.84462 1.90519 1.80854 1.19670 1.55722 1.41862 1.04663 1.09732 1.63814 1.19710 0.85993 0.90285 1.46924 0.87922 1.25258 0.98193 0.97119 0.97360 1.69616 1.18327 1.15988 1.50413 0.85856 0.79691 0.80463 0.78269 1.20450 1.20936 1.19410 1.24992 0.84890 0.93846 1.03050 1.84403 1.39535 1.15886 1.71802 0.91322 0.86131 0.91307 0.75169 0.90778 0.90983 0.91356 0.92535 0.92659 0.90727 0.95144 0.83019 0.93857 0.89553 0.77449 0.91899 0.74685 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.05 10.73 101.05 1.08 1.14 16 2 O -0.24 -1.71 10.55 -40.95 -0.43 -2.15 16 3 C 0.38 3.31 8.98 52.22 0.47 3.78 16 4 N -0.46 -4.73 11.10 -11.71 -0.13 -4.86 16 5 C -0.05 -0.47 6.99 -82.98 -0.58 -1.05 16 6 C 0.60 6.68 7.81 -12.54 -0.10 6.58 16 7 O -0.54 -7.14 16.89 5.26 0.09 -7.05 16 8 N -0.71 -6.99 5.28 -61.40 -0.32 -7.31 16 9 C 0.12 1.21 5.06 -4.05 -0.02 1.18 16 10 C -0.10 -1.04 2.63 -90.62 -0.24 -1.28 16 11 H 0.09 1.00 8.14 -51.93 -0.42 0.58 16 12 C -0.15 -1.52 8.84 37.16 0.33 -1.19 16 13 C 0.07 0.80 5.14 -3.82 -0.02 0.78 16 14 N -0.67 -10.72 6.12 -115.05 -0.70 -11.43 16 15 C 0.05 0.89 6.17 -4.97 -0.03 0.86 16 16 C 0.44 10.53 7.82 -10.99 -0.09 10.44 16 17 O -0.58 -16.00 15.78 5.55 0.09 -15.91 16 18 N -0.56 -14.44 5.29 -10.97 -0.06 -14.50 16 19 C -0.30 -8.44 9.68 -14.93 -0.14 -8.59 16 20 H 0.10 3.03 7.16 -52.49 -0.38 2.66 16 21 C 0.02 0.60 5.50 -17.47 -0.10 0.50 16 22 N -0.90 -24.71 13.05 55.50 0.72 -23.99 16 23 Si 0.93 21.21 29.55 -169.99 -5.02 16.19 16 24 H -0.28 -6.26 7.11 56.52 0.40 -5.86 16 25 H -0.28 -6.33 7.11 56.52 0.40 -5.93 16 26 H -0.27 -6.15 7.11 56.52 0.40 -5.74 16 27 C 0.00 0.03 11.93 29.90 0.36 0.39 16 28 O -0.23 -1.61 10.20 -17.77 -0.18 -1.79 16 29 H 0.07 0.11 8.14 -51.93 -0.42 -0.32 16 30 H 0.12 0.01 8.14 -51.93 -0.42 -0.41 16 31 H 0.07 0.11 8.14 -51.93 -0.42 -0.31 16 32 H 0.41 3.80 7.38 -40.82 -0.30 3.50 16 33 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 34 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 35 H 0.07 0.76 6.68 -51.93 -0.35 0.41 16 36 H 0.06 0.51 7.18 -51.93 -0.37 0.13 16 37 H 0.05 0.52 8.14 -51.93 -0.42 0.10 16 38 H 0.07 0.86 8.14 -51.93 -0.42 0.44 16 39 H 0.03 0.34 8.14 -51.93 -0.42 -0.08 16 40 H 0.35 5.76 6.68 -39.29 -0.26 5.50 16 41 H 0.04 0.70 8.14 -51.93 -0.42 0.27 16 42 H 0.09 1.42 8.14 -51.93 -0.42 1.00 16 43 H 0.39 9.59 7.90 -40.82 -0.32 9.27 16 44 H 0.27 7.03 8.31 -40.82 -0.34 6.69 16 45 H 0.24 0.93 8.06 -52.49 -0.42 0.51 16 LS Contribution 391.32 15.07 5.90 5.90 Total: -1.00 -35.02 391.32 -5.32 -40.34 By element: Atomic # 1 Polarization: 19.19 SS G_CDS: -6.19 Total: 13.00 kcal Atomic # 6 Polarization: 12.63 SS G_CDS: 0.92 Total: 13.55 kcal Atomic # 7 Polarization: -61.60 SS G_CDS: -0.49 Total: -62.09 kcal Atomic # 8 Polarization: -26.45 SS G_CDS: -0.44 Total: -26.89 kcal Atomic # 14 Polarization: 21.21 SS G_CDS: -5.02 Total: 16.19 kcal Total LS contribution 5.90 Total: 5.90 kcal Total: -35.02 -5.32 -40.34 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001753626949.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -41.828 kcal (2) G-P(sol) polarization free energy of solvation -35.023 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -76.851 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.321 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.344 kcal (6) G-S(sol) free energy of system = (1) + (5) -82.172 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds