Wall clock time and date at job start Sat Apr 11 2020 06:00:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42904 * 1 3 3 C 1.35344 * 117.00055 * 2 1 4 4 N 1.30554 * 125.44602 * 180.32173 * 3 2 1 5 5 C 1.36331 * 108.38222 * 180.15079 * 4 3 2 6 6 C 1.47370 * 126.41496 * 179.85828 * 5 4 3 7 7 O 1.21617 * 120.00275 * 179.68728 * 6 5 4 8 8 N 1.34781 * 119.99685 * 359.69254 * 6 5 4 9 9 C 1.46497 * 120.00055 * 179.97438 * 8 6 5 10 10 C 1.52993 * 109.47162 * 180.02562 * 9 8 6 11 11 H 1.09002 * 109.47076 * 304.99867 * 10 9 8 12 12 C 1.53004 * 109.47412 * 64.99947 * 10 9 8 13 13 C 1.53006 * 109.47268 * 185.00067 * 10 9 8 14 14 N 1.46898 * 109.47138 * 174.99901 * 13 10 9 15 15 C 1.46906 * 110.99888 * 180.02562 * 14 13 10 16 16 C 1.50699 * 109.47140 * 179.97438 * 15 14 13 17 17 O 1.21289 * 119.99678 * 0.02562 * 16 15 14 18 18 N 1.34777 * 119.99614 * 180.02562 * 16 15 14 19 19 C 1.37097 * 119.99518 * 180.02562 * 18 16 15 20 20 H 1.07996 * 120.00466 * 359.97438 * 19 18 16 21 21 C 1.38949 * 120.00085 * 179.97438 * 19 18 16 22 22 N 1.31416 * 119.99807 * 359.97438 * 21 19 18 23 23 Si 1.86803 * 120.00303 * 179.97438 * 21 19 18 24 24 H 1.48500 * 109.46922 * 90.00327 * 23 21 19 25 25 H 1.48500 * 109.47032 * 210.00074 * 23 21 19 26 26 H 1.48489 * 109.47076 * 330.00276 * 23 21 19 27 27 C 1.35920 * 107.17547 * 359.60090 * 5 4 3 28 28 O 1.34206 * 125.44714 * 0.02562 * 3 2 1 29 29 H 1.08998 * 109.47256 * 59.99490 * 1 2 3 30 30 H 1.08998 * 109.46994 * 180.02562 * 1 2 3 31 31 H 1.09004 * 109.46785 * 299.99976 * 1 2 3 32 32 H 0.96998 * 120.00074 * 0.02562 * 8 6 5 33 33 H 1.09005 * 109.46785 * 59.99797 * 9 8 6 34 34 H 1.09001 * 109.46833 * 299.99849 * 9 8 6 35 35 H 1.09001 * 109.47106 * 179.97438 * 12 10 9 36 36 H 1.09000 * 109.46646 * 300.00184 * 12 10 9 37 37 H 1.08997 * 109.46495 * 60.00353 * 12 10 9 38 38 H 1.08997 * 109.46770 * 54.99847 * 13 10 9 39 39 H 1.08995 * 109.47019 * 295.00060 * 13 10 9 40 40 H 1.00901 * 111.00121 * 56.04666 * 14 13 10 41 41 H 1.09004 * 109.47040 * 299.99934 * 15 14 13 42 42 H 1.09000 * 109.47033 * 59.99886 * 15 14 13 43 43 H 0.96996 * 120.00269 * 359.97438 * 18 16 15 44 44 H 0.97002 * 120.00022 * 179.97438 * 22 21 19 45 45 H 1.07997 * 126.45605 * 180.26246 * 27 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0435 1.2059 0.0000 4 7 3.3349 1.3977 -0.0060 5 6 3.5701 2.7405 -0.0003 6 6 4.8893 3.3976 -0.0011 7 8 4.9640 4.6114 -0.0013 8 7 6.0129 2.6531 -0.0017 9 6 7.3242 3.3062 -0.0030 10 6 8.4237 2.2424 -0.0041 11 1 8.2758 1.5662 0.8379 12 6 8.3651 1.4495 -1.3113 13 6 9.7897 2.9205 0.1202 14 7 10.8358 1.8962 0.2397 15 6 12.1640 2.5120 0.3619 16 6 13.2088 1.4328 0.4826 17 8 12.8795 0.2655 0.4678 18 7 14.5092 1.7647 0.6071 19 6 15.4597 0.7829 0.7164 20 1 15.1666 -0.2565 0.7032 21 6 16.8004 1.1250 0.8441 22 7 17.1572 2.3897 0.8596 23 14 18.0956 -0.2128 0.9939 24 1 18.5772 -0.5891 -0.3595 25 1 19.2351 0.2898 1.8027 26 1 17.5042 -1.4023 1.6573 27 6 2.3603 3.3600 0.0003 28 8 1.4227 2.3958 0.0005 29 1 -0.3634 0.5139 -0.8899 30 1 -0.3633 -1.0276 0.0005 31 1 -0.3633 0.5139 0.8900 32 1 5.9532 1.6850 -0.0020 33 1 7.4210 3.9286 0.8866 34 1 7.4196 3.9277 -0.8934 35 1 9.1488 0.6919 -1.3122 36 1 7.3920 0.9664 -1.3998 37 1 8.5131 2.1258 -2.1533 38 1 9.8005 3.5559 1.0058 39 1 9.9755 3.5282 -0.7653 40 1 10.8045 1.2548 -0.5387 41 1 12.3666 3.1171 -0.5218 42 1 12.1910 3.1443 1.2493 43 1 14.7725 2.6982 0.6185 44 1 18.0931 2.6285 0.9492 45 1 2.1850 4.4256 0.0003 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001753626949.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:00:35 Heat of formation + Delta-G solvation = -114.025114 kcal Electronic energy + Delta-G solvation = -27771.585898 eV Core-core repulsion = 23404.305701 eV Total energy + Delta-G solvation = -4367.280197 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 340.163 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -44.56190 -40.78037 -40.15634 -39.78091 -38.33268 -36.21697 -36.07423 -35.63295 -33.42039 -33.09664 -31.22096 -28.81726 -28.32160 -27.98256 -26.68401 -25.31823 -24.09645 -23.32732 -21.79521 -21.37622 -21.01376 -20.03784 -19.84270 -18.60393 -18.40883 -17.88622 -17.44706 -17.20347 -16.88811 -16.61613 -16.40736 -16.36297 -16.04489 -15.94756 -15.50590 -15.35478 -15.10243 -14.68482 -14.47318 -14.31882 -13.93480 -13.58902 -13.44765 -13.34229 -13.10698 -13.06938 -12.96386 -12.78252 -12.41120 -12.13669 -12.11421 -12.07401 -11.95398 -11.84249 -11.74814 -11.49692 -11.41977 -10.33519 -10.21424 -10.00566 -9.76132 -9.29621 -8.45775 -5.94594 0.00177 0.86456 0.87959 1.38869 1.42608 1.55530 1.68723 2.05619 2.06513 2.15691 2.30519 2.95863 3.21606 3.34420 3.54910 3.73247 3.90483 3.93171 4.00035 4.11510 4.20781 4.24656 4.34941 4.41303 4.49213 4.54084 4.59049 4.60587 4.63999 4.65848 4.76813 4.80763 4.96003 5.01606 5.21974 5.33626 5.41076 5.41978 5.58182 5.90497 6.12256 6.25053 6.43904 6.53460 6.61238 7.02122 7.13517 7.57323 8.12677 8.71609 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.028017 B = 0.001427 C = 0.001370 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 999.147744 B =19611.155991 C =20430.235252 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.014 3.986 2 O -0.258 6.258 3 C 0.381 3.619 4 N -0.484 5.484 5 C -0.079 4.079 6 C 0.603 3.397 7 O -0.563 6.563 8 N -0.702 5.702 9 C 0.131 3.869 10 C -0.091 4.091 11 H 0.082 0.918 12 C -0.150 4.150 13 C 0.068 3.932 14 N -0.683 5.683 15 C 0.064 3.936 16 C 0.437 3.563 17 O -0.624 6.624 18 N -0.573 5.573 19 C -0.336 4.336 20 H 0.079 0.921 21 C -0.012 4.012 22 N -0.920 5.920 23 Si 0.993 3.007 24 H -0.270 1.270 25 H -0.271 1.271 26 H -0.274 1.274 27 C 0.029 3.971 28 O -0.216 6.216 29 H 0.077 0.923 30 H 0.144 0.856 31 H 0.077 0.923 32 H 0.415 0.585 33 H 0.073 0.927 34 H 0.074 0.926 35 H 0.053 0.947 36 H 0.064 0.936 37 H 0.061 0.939 38 H 0.082 0.918 39 H 0.045 0.955 40 H 0.345 0.655 41 H 0.067 0.933 42 H 0.105 0.895 43 H 0.397 0.603 44 H 0.278 0.722 45 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -35.271 3.736 -3.545 35.645 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.080 4.080 2 O -0.166 6.166 3 C 0.135 3.865 4 N -0.231 5.231 5 C -0.197 4.197 6 C 0.389 3.611 7 O -0.443 6.443 8 N -0.352 5.352 9 C 0.007 3.993 10 C -0.110 4.110 11 H 0.100 0.900 12 C -0.208 4.208 13 C -0.061 4.061 14 N -0.317 5.317 15 C -0.068 4.068 16 C 0.224 3.776 17 O -0.510 6.510 18 N -0.210 5.210 19 C -0.465 4.465 20 H 0.097 0.903 21 C -0.212 4.212 22 N -0.561 5.561 23 Si 0.817 3.183 24 H -0.196 1.196 25 H -0.195 1.195 26 H -0.198 1.198 27 C -0.043 4.043 28 O -0.107 6.107 29 H 0.096 0.904 30 H 0.162 0.838 31 H 0.096 0.904 32 H 0.252 0.748 33 H 0.091 0.909 34 H 0.092 0.908 35 H 0.072 0.928 36 H 0.083 0.917 37 H 0.080 0.920 38 H 0.101 0.899 39 H 0.063 0.937 40 H 0.165 0.835 41 H 0.085 0.915 42 H 0.123 0.877 43 H 0.231 0.769 44 H 0.087 0.913 45 H 0.283 0.717 Dipole moment (debyes) X Y Z Total from point charges -34.870 3.088 -2.866 35.124 hybrid contribution 0.465 0.155 -0.745 0.892 sum -34.405 3.244 -3.611 34.745 Atomic orbital electron populations 1.23705 0.72572 1.07752 1.03951 1.86421 1.26180 1.15048 1.88912 1.23459 0.85514 0.80311 0.97236 1.71011 1.11096 1.16131 1.24864 1.21577 0.96047 0.88653 1.13378 1.16771 0.82563 0.85621 0.76119 1.90825 1.87226 1.13660 1.52568 1.45809 1.05269 1.11293 1.72878 1.21386 0.80121 0.94894 1.02893 1.21219 0.92964 0.96972 0.99819 0.89974 1.21876 1.02238 1.00213 0.96456 1.21952 0.89553 0.93028 1.01606 1.60078 1.01906 1.18671 1.51017 1.21540 0.87979 0.94167 1.03140 1.20911 0.83792 0.90616 0.82246 1.90486 1.81539 1.22001 1.56995 1.41929 1.05181 1.09459 1.64453 1.19682 0.87475 0.89987 1.49375 0.90335 1.26035 0.99472 0.99401 0.96273 1.69675 1.19135 1.17226 1.50063 0.84925 0.77192 0.77616 0.78584 1.19581 1.19525 1.19846 1.25606 0.84005 0.94806 0.99912 1.84439 1.39191 1.15564 1.71477 0.90398 0.83798 0.90438 0.74836 0.90857 0.90752 0.92781 0.91729 0.92021 0.89924 0.93687 0.83541 0.91487 0.87736 0.76945 0.91300 0.71677 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.04 10.73 113.37 1.22 1.26 16 2 O -0.26 -3.40 10.55 -64.12 -0.68 -4.08 16 3 C 0.38 6.28 8.98 130.43 1.17 7.45 16 4 N -0.48 -9.92 11.10 -419.39 -4.65 -14.57 16 5 C -0.08 -1.48 6.99 40.31 0.28 -1.20 16 6 C 0.60 13.08 7.81 86.65 0.68 13.75 16 7 O -0.56 -14.65 16.89 -4.08 -0.07 -14.72 16 8 N -0.70 -13.55 5.28 -466.42 -2.46 -16.02 16 9 C 0.13 2.41 5.06 86.38 0.44 2.85 16 10 C -0.09 -1.76 2.63 -10.79 -0.03 -1.79 16 11 H 0.08 1.77 8.14 -2.39 -0.02 1.75 16 12 C -0.15 -2.87 8.84 71.98 0.64 -2.23 16 13 C 0.07 1.51 5.14 86.31 0.44 1.95 16 14 N -0.68 -21.31 6.12 -517.92 -3.17 -24.48 16 15 C 0.06 2.20 6.17 85.56 0.53 2.73 16 16 C 0.44 21.03 7.82 87.66 0.69 21.72 16 17 O -0.62 -35.00 15.78 -3.06 -0.05 -35.05 16 18 N -0.57 -29.73 5.29 -306.99 -1.62 -31.35 16 19 C -0.34 -19.29 9.68 84.04 0.81 -18.47 16 20 H 0.08 4.81 7.16 -2.91 -0.02 4.79 16 21 C -0.01 -0.65 5.50 84.93 0.47 -0.18 16 22 N -0.92 -49.96 13.05 21.66 0.28 -49.68 16 23 Si 0.99 43.27 29.55 68.60 2.03 45.30 16 24 H -0.27 -11.39 7.11 99.48 0.71 -10.69 16 25 H -0.27 -11.14 7.11 99.48 0.71 -10.44 16 26 H -0.27 -12.01 7.11 99.48 0.71 -11.31 16 27 C 0.03 0.37 11.93 67.28 0.80 1.18 16 28 O -0.22 -2.74 10.20 18.83 0.19 -2.55 16 29 H 0.08 0.10 8.14 -2.39 -0.02 0.08 16 30 H 0.14 -0.27 8.14 -2.39 -0.02 -0.29 16 31 H 0.08 0.11 8.14 -2.38 -0.02 0.09 16 32 H 0.41 7.56 7.38 -92.71 -0.68 6.88 16 33 H 0.07 1.39 8.14 -2.38 -0.02 1.37 16 34 H 0.07 1.37 8.14 -2.39 -0.02 1.35 16 35 H 0.05 1.20 6.68 -2.39 -0.02 1.18 16 36 H 0.06 1.11 7.18 -2.39 -0.02 1.10 16 37 H 0.06 1.09 8.14 -2.39 -0.02 1.07 16 38 H 0.08 1.73 8.14 -2.39 -0.02 1.71 16 39 H 0.04 0.90 8.14 -2.39 -0.02 0.88 16 40 H 0.34 11.29 6.68 -89.69 -0.60 10.69 16 41 H 0.07 2.01 8.14 -2.38 -0.02 1.99 16 42 H 0.10 3.24 8.14 -2.39 -0.02 3.22 16 43 H 0.40 19.49 7.90 -92.71 -0.73 18.76 16 44 H 0.28 14.10 8.31 -92.71 -0.77 13.33 16 45 H 0.27 1.42 8.06 -2.91 -0.02 1.40 16 Total: -1.00 -76.24 391.32 -3.03 -79.27 By element: Atomic # 1 Polarization: 39.88 SS G_CDS: -0.96 Total: 38.92 kcal Atomic # 6 Polarization: 20.87 SS G_CDS: 8.13 Total: 29.01 kcal Atomic # 7 Polarization: -124.47 SS G_CDS: -11.63 Total: -136.10 kcal Atomic # 8 Polarization: -55.79 SS G_CDS: -0.60 Total: -56.40 kcal Atomic # 14 Polarization: 43.27 SS G_CDS: 2.03 Total: 45.30 kcal Total: -76.24 -3.03 -79.27 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001753626949.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -34.756 kcal (2) G-P(sol) polarization free energy of solvation -76.243 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -110.998 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.027 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.270 kcal (6) G-S(sol) free energy of system = (1) + (5) -114.025 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds