Wall clock time and date at job start Sat Apr 11 2020 06:00:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.09007 * 109.46704 * 2 1 4 4 N 1.46491 * 109.47138 * 120.00113 * 2 1 3 5 5 C 1.36940 * 120.00231 * 274.99861 * 4 2 1 6 6 H 1.07998 * 119.99906 * 359.97438 * 5 4 2 7 7 C 1.38810 * 119.99913 * 180.02562 * 5 4 2 8 8 N 1.31621 * 119.99697 * 179.97438 * 7 5 4 9 9 Si 1.86799 * 120.00285 * 0.02562 * 7 5 4 10 10 H 1.48497 * 109.47247 * 89.99710 * 9 7 5 11 11 H 1.48500 * 109.47048 * 209.99870 * 9 7 5 12 12 H 1.48500 * 109.46870 * 329.99809 * 9 7 5 13 13 C 1.52997 * 109.46842 * 240.00505 * 2 1 3 14 14 H 1.08997 * 109.55821 * 64.87237 * 13 2 1 15 15 C 1.53300 * 109.51089 * 184.99826 * 13 2 1 16 16 N 1.47148 * 108.41473 * 172.24371 * 15 13 2 17 17 C 1.34778 * 120.98259 * 129.42375 * 16 15 13 18 18 O 1.21278 * 119.99716 * 0.02562 * 17 16 15 19 19 C 1.50703 * 119.99874 * 179.97438 * 17 16 15 20 20 N 1.46507 * 109.46913 * 179.97438 * 19 17 16 21 21 C 1.34764 * 124.17595 * 90.00103 * 20 19 17 22 22 O 1.21244 * 127.15812 * 359.93368 * 21 20 19 23 23 C 1.51581 * 105.68855 * 179.97438 * 21 20 19 24 24 N 1.47314 * 103.58898 * 0.02562 * 23 21 20 25 25 C 1.33787 * 124.17639 * 269.70430 * 20 19 17 26 26 O 1.21532 * 123.77534 * 0.03715 * 25 20 19 27 27 C 1.47156 * 118.03649 * 309.44697 * 16 15 13 28 28 C 1.53286 * 108.38530 * 50.53434 * 27 16 15 29 29 O 1.42961 * 109.22305 * 307.70098 * 28 27 16 30 30 H 1.09002 * 109.47084 * 299.99355 * 1 2 3 31 31 H 1.08996 * 109.47144 * 59.99713 * 1 2 3 32 32 H 1.08997 * 109.46587 * 180.02562 * 1 2 3 33 33 H 0.97001 * 119.99975 * 95.00354 * 4 2 1 34 34 H 0.97000 * 119.99830 * 179.97438 * 8 7 5 35 35 H 1.09002 * 109.68260 * 52.49979 * 15 13 2 36 36 H 1.08999 * 109.68056 * 291.98411 * 15 13 2 37 37 H 1.08993 * 109.47438 * 300.00006 * 19 17 16 38 38 H 1.08998 * 109.46742 * 60.00431 * 19 17 16 39 39 H 1.09000 * 110.59929 * 118.52410 * 23 21 20 40 40 H 1.09002 * 110.60059 * 241.32682 * 23 21 20 41 41 H 0.97006 * 126.68983 * 179.97438 * 24 23 21 42 42 H 1.08998 * 109.67987 * 170.26585 * 27 16 15 43 43 H 1.09005 * 109.67921 * 290.80906 * 27 16 15 44 44 H 1.09003 * 109.51258 * 67.62584 * 28 27 16 45 45 H 1.09002 * 109.51282 * 187.72484 * 28 27 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0278 0.0000 4 7 2.0183 -0.6906 1.1961 5 6 2.1492 -0.0075 2.3757 6 1 1.8927 1.0405 2.4241 7 6 2.6124 -0.6618 3.5089 8 7 2.7386 -0.0051 4.6426 9 14 3.0580 -2.4739 3.4246 10 1 4.4907 -2.6150 3.0606 11 1 2.8189 -3.1045 4.7477 12 1 2.2184 -3.1429 2.3985 13 6 2.0400 -0.7211 -1.2493 14 1 1.7504 -0.1604 -2.1380 15 6 3.5678 -0.8317 -1.1889 16 7 4.0162 -1.6869 -2.2992 17 6 4.9967 -1.2852 -3.1322 18 8 5.5235 -0.2046 -2.9720 19 6 5.4390 -2.1792 -4.2619 20 7 6.5081 -1.5201 -5.0162 21 6 7.8205 -1.6477 -4.7379 22 8 8.3203 -2.3038 -3.8492 23 6 8.5420 -0.7997 -5.7666 24 7 7.4497 -0.2398 -6.5811 25 6 6.3024 -0.7218 -6.0699 26 8 5.2019 -0.4581 -6.5132 27 6 3.3622 -2.9935 -2.4736 28 6 1.8444 -2.7786 -2.4717 29 8 1.4759 -2.0343 -1.3081 30 1 -0.3633 0.5137 0.8901 31 1 -0.3633 0.5139 -0.8899 32 1 -0.3632 -1.0277 0.0005 33 1 2.2491 -1.6317 1.1525 34 1 3.0619 -0.4624 5.4345 35 1 3.8665 -1.2760 -0.2395 36 1 4.0116 0.1591 -1.2863 37 1 5.8075 -3.1215 -3.8566 38 1 4.5947 -2.3735 -4.9233 39 1 9.1045 -0.0028 -5.2802 40 1 9.2020 -1.4161 -6.3770 41 1 7.5402 0.3571 -7.3404 42 1 3.6695 -3.4342 -3.4220 43 1 3.6402 -3.6556 -1.6535 44 1 1.5540 -2.2253 -3.3649 45 1 1.3399 -3.7447 -2.4618 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001755447658.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:00:42 Heat of formation + Delta-G solvation = -81.799045 kcal Electronic energy + Delta-G solvation = -30929.515840 eV Core-core repulsion = 26563.633070 eV Total energy + Delta-G solvation = -4365.882769 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 340.163 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -42.74429 -40.37934 -38.93187 -38.52739 -36.46037 -35.72423 -35.04338 -34.71355 -32.31526 -30.67070 -29.57442 -28.91770 -28.11241 -27.16113 -24.23085 -23.40213 -23.30552 -22.65153 -21.22358 -19.83723 -19.38766 -18.43274 -18.14231 -17.69645 -17.21593 -16.88295 -16.54410 -16.11390 -15.73726 -15.63492 -15.37126 -15.00853 -14.78322 -14.54250 -14.39815 -14.33561 -14.10887 -13.68085 -13.61669 -13.43494 -12.91778 -12.52486 -12.46788 -12.26202 -11.99744 -11.66421 -11.38886 -11.34025 -10.94703 -10.85850 -10.80592 -10.67229 -10.59883 -10.32314 -10.07130 -9.98260 -9.96804 -9.67092 -9.54442 -8.94258 -8.56863 -7.23639 -5.74038 -3.09226 1.26112 1.63907 2.35862 2.49775 2.71651 2.87938 3.40687 3.45343 3.48146 3.56847 3.80459 4.10758 4.28183 4.53006 4.62551 4.63171 4.65216 4.66329 4.77272 4.95301 4.97914 5.11522 5.18011 5.21651 5.31095 5.53216 5.55700 5.60059 5.65531 5.84615 6.12662 6.17107 6.29725 6.31255 6.36306 6.49917 6.58879 6.73094 6.94998 7.06911 7.15490 7.29938 7.69726 7.90870 8.02328 8.45127 9.24068 9.96156 10.16868 11.44302 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.015339 B = 0.003109 C = 0.002887 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1824.934971 B = 9005.018245 C = 9697.599178 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.189 3.811 3 H 0.069 0.931 4 N -0.743 5.743 5 C -0.242 4.242 6 H 0.091 0.909 7 C 0.006 3.994 8 N -0.934 5.934 9 Si 0.879 3.121 10 H -0.285 1.285 11 H -0.292 1.292 12 H -0.273 1.273 13 C 0.074 3.926 14 H 0.062 0.938 15 C 0.086 3.914 16 N -0.610 5.610 17 C 0.503 3.497 18 O -0.527 6.527 19 C 0.102 3.898 20 N -0.563 5.563 21 C 0.525 3.475 22 O -0.463 6.463 23 C 0.066 3.934 24 N -0.727 5.727 25 C 0.708 3.292 26 O -0.540 6.540 27 C 0.067 3.933 28 C 0.047 3.953 29 O -0.363 6.363 30 H 0.058 0.942 31 H 0.036 0.964 32 H 0.055 0.945 33 H 0.366 0.634 34 H 0.259 0.741 35 H 0.093 0.907 36 H 0.101 0.899 37 H 0.126 0.874 38 H 0.127 0.873 39 H 0.126 0.874 40 H 0.125 0.875 41 H 0.442 0.558 42 H 0.089 0.911 43 H 0.085 0.915 44 H 0.054 0.946 45 H 0.105 0.895 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.307 -6.771 -26.961 29.013 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C 0.079 3.921 3 H 0.087 0.913 4 N -0.387 5.387 5 C -0.372 4.372 6 H 0.109 0.891 7 C -0.190 4.190 8 N -0.582 5.582 9 Si 0.709 3.291 10 H -0.212 1.212 11 H -0.218 1.218 12 H -0.199 1.199 13 C 0.015 3.985 14 H 0.080 0.920 15 C -0.035 4.035 16 N -0.344 5.344 17 C 0.289 3.711 18 O -0.403 6.403 19 C -0.023 4.023 20 N -0.309 5.309 21 C 0.312 3.688 22 O -0.332 6.332 23 C -0.061 4.061 24 N -0.392 5.392 25 C 0.409 3.591 26 O -0.413 6.413 27 C -0.056 4.056 28 C -0.031 4.031 29 O -0.281 6.281 30 H 0.077 0.923 31 H 0.055 0.945 32 H 0.074 0.926 33 H 0.199 0.801 34 H 0.069 0.931 35 H 0.111 0.889 36 H 0.120 0.880 37 H 0.144 0.856 38 H 0.145 0.855 39 H 0.144 0.856 40 H 0.143 0.857 41 H 0.287 0.713 42 H 0.107 0.893 43 H 0.103 0.897 44 H 0.072 0.928 45 H 0.123 0.877 Dipole moment (debyes) X Y Z Total from point charges 8.121 -6.351 -26.216 28.171 hybrid contribution 0.537 -1.052 -0.359 1.234 sum 8.658 -7.403 -26.575 28.914 Atomic orbital electron populations 1.22294 0.97870 1.01653 1.00159 1.20235 0.93077 0.94874 0.83964 0.91276 1.42768 1.79437 1.09595 1.06875 1.19072 1.36863 0.95489 0.85769 0.89139 1.24637 1.01435 0.97346 0.95534 1.69699 1.52646 1.35553 1.00265 0.86618 0.78459 0.87084 0.76945 1.21196 1.21806 1.19896 1.23010 0.91358 0.84105 1.00020 0.92007 1.22465 0.95148 0.96933 0.88988 1.48178 1.36534 1.19120 1.30596 1.20629 0.79923 0.87527 0.83044 1.90733 1.54833 1.22374 1.72378 1.21501 0.91317 0.95925 0.93599 1.45836 1.08948 1.46202 1.29878 1.20925 0.82261 0.80843 0.84782 1.90858 1.71748 1.39591 1.30987 1.22451 0.91619 0.99120 0.92951 1.45339 1.05262 1.52724 1.35882 1.15745 0.85251 0.78544 0.79601 1.91027 1.23799 1.62286 1.64184 1.22572 0.94865 0.85093 1.03114 1.22904 0.92873 0.97701 0.89651 1.88101 1.71034 1.27230 1.41709 0.92307 0.94487 0.92557 0.80067 0.93102 0.88936 0.88039 0.85637 0.85536 0.85596 0.85693 0.71301 0.89310 0.89725 0.92766 0.87671 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.87 9.30 37.16 0.35 -2.52 16 2 C 0.19 3.62 2.80 -67.94 -0.19 3.43 16 3 H 0.07 1.35 8.08 -51.93 -0.42 0.93 16 4 N -0.74 -17.38 4.05 -53.43 -0.22 -17.60 16 5 C -0.24 -6.77 10.41 -15.06 -0.16 -6.93 16 6 H 0.09 2.70 8.06 -52.49 -0.42 2.28 16 7 C 0.01 0.18 5.50 -17.43 -0.10 0.09 16 8 N -0.93 -29.51 13.97 55.49 0.78 -28.73 16 9 Si 0.88 22.32 27.74 -169.99 -4.71 17.61 16 10 H -0.29 -7.22 7.11 56.52 0.40 -6.82 16 11 H -0.29 -7.52 7.11 56.52 0.40 -7.12 16 12 H -0.27 -6.59 6.52 56.52 0.37 -6.22 16 13 C 0.07 1.20 2.57 -26.58 -0.07 1.13 16 14 H 0.06 0.92 8.14 -51.93 -0.42 0.50 16 15 C 0.09 1.45 5.82 -3.53 -0.02 1.43 16 16 N -0.61 -8.36 3.02 -172.28 -0.52 -8.88 16 17 C 0.50 7.17 7.78 -10.98 -0.09 7.09 16 18 O -0.53 -9.62 15.90 5.56 0.09 -9.53 16 19 C 0.10 1.01 4.56 -5.19 -0.02 0.99 16 20 N -0.56 -5.87 2.09 -122.02 -0.26 -6.12 16 21 C 0.52 5.03 8.32 -10.56 -0.09 4.94 16 22 O -0.46 -5.87 17.76 5.59 0.10 -5.77 16 23 C 0.07 0.31 7.97 -4.32 -0.03 0.28 16 24 N -0.73 -4.41 6.58 -65.73 -0.43 -4.84 16 25 C 0.71 7.50 8.62 -88.02 -0.76 6.74 16 26 O -0.54 -7.58 17.48 5.34 0.09 -7.49 16 27 C 0.07 0.66 6.54 -3.54 -0.02 0.64 16 28 C 0.05 0.49 6.99 37.31 0.26 0.75 16 29 O -0.36 -5.58 9.25 -35.23 -0.33 -5.90 16 30 H 0.06 1.14 8.14 -51.93 -0.42 0.72 16 31 H 0.04 0.56 8.14 -51.93 -0.42 0.14 16 32 H 0.06 1.03 7.57 -51.93 -0.39 0.64 16 33 H 0.37 8.60 4.94 -40.82 -0.20 8.40 16 34 H 0.26 7.82 8.31 -40.82 -0.34 7.48 16 35 H 0.09 1.77 6.94 -51.93 -0.36 1.41 16 36 H 0.10 1.84 7.08 -51.93 -0.37 1.47 16 37 H 0.13 0.96 7.88 -51.93 -0.41 0.55 16 38 H 0.13 0.99 7.37 -51.93 -0.38 0.61 16 39 H 0.13 0.42 8.14 -51.93 -0.42 -0.01 16 40 H 0.13 0.17 8.14 -51.93 -0.42 -0.25 16 41 H 0.44 1.51 8.96 -40.82 -0.37 1.14 16 42 H 0.09 0.53 6.05 -51.93 -0.31 0.22 16 43 H 0.08 0.85 8.14 -51.93 -0.42 0.43 16 44 H 0.05 0.53 8.14 -51.93 -0.42 0.10 16 45 H 0.11 0.86 8.14 -51.93 -0.42 0.43 16 LS Contribution 372.12 15.07 5.61 5.61 Total: -1.00 -39.63 372.12 -6.93 -46.56 By element: Atomic # 1 Polarization: 13.23 SS G_CDS: -6.19 Total: 7.04 kcal Atomic # 6 Polarization: 18.99 SS G_CDS: -0.94 Total: 18.05 kcal Atomic # 7 Polarization: -65.52 SS G_CDS: -0.65 Total: -66.17 kcal Atomic # 8 Polarization: -28.65 SS G_CDS: -0.04 Total: -28.70 kcal Atomic # 14 Polarization: 22.32 SS G_CDS: -4.71 Total: 17.61 kcal Total LS contribution 5.61 Total: 5.61 kcal Total: -39.63 -6.93 -46.56 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001755447658.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -35.241 kcal (2) G-P(sol) polarization free energy of solvation -39.630 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -74.871 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.928 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.558 kcal (6) G-S(sol) free energy of system = (1) + (5) -81.799 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds