Wall clock time and date at job start Sat Apr 11 2020 06:00:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.09007 * 109.46704 * 2 1 4 4 N 1.46491 * 109.47138 * 120.00113 * 2 1 3 5 5 C 1.36940 * 120.00231 * 274.99861 * 4 2 1 6 6 H 1.07998 * 119.99906 * 359.97438 * 5 4 2 7 7 C 1.38810 * 119.99913 * 180.02562 * 5 4 2 8 8 N 1.31621 * 119.99697 * 179.97438 * 7 5 4 9 9 Si 1.86799 * 120.00285 * 0.02562 * 7 5 4 10 10 H 1.48497 * 109.47247 * 89.99710 * 9 7 5 11 11 H 1.48500 * 109.47048 * 209.99870 * 9 7 5 12 12 H 1.48500 * 109.46870 * 329.99809 * 9 7 5 13 13 C 1.52997 * 109.46842 * 240.00505 * 2 1 3 14 14 H 1.08997 * 109.55821 * 64.87237 * 13 2 1 15 15 C 1.53300 * 109.51089 * 184.99826 * 13 2 1 16 16 N 1.47148 * 108.41473 * 172.24371 * 15 13 2 17 17 C 1.34778 * 120.98259 * 129.42375 * 16 15 13 18 18 O 1.21278 * 119.99716 * 0.02562 * 17 16 15 19 19 C 1.50703 * 119.99874 * 179.97438 * 17 16 15 20 20 N 1.46507 * 109.46913 * 179.97438 * 19 17 16 21 21 C 1.34764 * 124.17595 * 90.00103 * 20 19 17 22 22 O 1.21244 * 127.15812 * 359.93368 * 21 20 19 23 23 C 1.51581 * 105.68855 * 179.97438 * 21 20 19 24 24 N 1.47314 * 103.58898 * 0.02562 * 23 21 20 25 25 C 1.33787 * 124.17639 * 269.70430 * 20 19 17 26 26 O 1.21532 * 123.77534 * 0.03715 * 25 20 19 27 27 C 1.47156 * 118.03649 * 309.44697 * 16 15 13 28 28 C 1.53286 * 108.38530 * 50.53434 * 27 16 15 29 29 O 1.42961 * 109.22305 * 307.70098 * 28 27 16 30 30 H 1.09002 * 109.47084 * 299.99355 * 1 2 3 31 31 H 1.08996 * 109.47144 * 59.99713 * 1 2 3 32 32 H 1.08997 * 109.46587 * 180.02562 * 1 2 3 33 33 H 0.97001 * 119.99975 * 95.00354 * 4 2 1 34 34 H 0.97000 * 119.99830 * 179.97438 * 8 7 5 35 35 H 1.09002 * 109.68260 * 52.49979 * 15 13 2 36 36 H 1.08999 * 109.68056 * 291.98411 * 15 13 2 37 37 H 1.08993 * 109.47438 * 300.00006 * 19 17 16 38 38 H 1.08998 * 109.46742 * 60.00431 * 19 17 16 39 39 H 1.09000 * 110.59929 * 118.52410 * 23 21 20 40 40 H 1.09002 * 110.60059 * 241.32682 * 23 21 20 41 41 H 0.97006 * 126.68983 * 179.97438 * 24 23 21 42 42 H 1.08998 * 109.67987 * 170.26585 * 27 16 15 43 43 H 1.09005 * 109.67921 * 290.80906 * 27 16 15 44 44 H 1.09003 * 109.51258 * 67.62584 * 28 27 16 45 45 H 1.09002 * 109.51282 * 187.72484 * 28 27 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0278 0.0000 4 7 2.0183 -0.6906 1.1961 5 6 2.1492 -0.0075 2.3757 6 1 1.8927 1.0405 2.4241 7 6 2.6124 -0.6618 3.5089 8 7 2.7386 -0.0051 4.6426 9 14 3.0580 -2.4739 3.4246 10 1 4.4907 -2.6150 3.0606 11 1 2.8189 -3.1045 4.7477 12 1 2.2184 -3.1429 2.3985 13 6 2.0400 -0.7211 -1.2493 14 1 1.7504 -0.1604 -2.1380 15 6 3.5678 -0.8317 -1.1889 16 7 4.0162 -1.6869 -2.2992 17 6 4.9967 -1.2852 -3.1322 18 8 5.5235 -0.2046 -2.9720 19 6 5.4390 -2.1792 -4.2619 20 7 6.5081 -1.5201 -5.0162 21 6 7.8205 -1.6477 -4.7379 22 8 8.3203 -2.3038 -3.8492 23 6 8.5420 -0.7997 -5.7666 24 7 7.4497 -0.2398 -6.5811 25 6 6.3024 -0.7218 -6.0699 26 8 5.2019 -0.4581 -6.5132 27 6 3.3622 -2.9935 -2.4736 28 6 1.8444 -2.7786 -2.4717 29 8 1.4759 -2.0343 -1.3081 30 1 -0.3633 0.5137 0.8901 31 1 -0.3633 0.5139 -0.8899 32 1 -0.3632 -1.0277 0.0005 33 1 2.2491 -1.6317 1.1525 34 1 3.0619 -0.4624 5.4345 35 1 3.8665 -1.2760 -0.2395 36 1 4.0116 0.1591 -1.2863 37 1 5.8075 -3.1215 -3.8566 38 1 4.5947 -2.3735 -4.9233 39 1 9.1045 -0.0028 -5.2802 40 1 9.2020 -1.4161 -6.3770 41 1 7.5402 0.3571 -7.3404 42 1 3.6695 -3.4342 -3.4220 43 1 3.6402 -3.6556 -1.6535 44 1 1.5540 -2.2253 -3.3649 45 1 1.3399 -3.7447 -2.4618 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001755447658.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:00:41 Heat of formation + Delta-G solvation = -115.104830 kcal Electronic energy + Delta-G solvation = -30930.960087 eV Core-core repulsion = 26563.633070 eV Total energy + Delta-G solvation = -4367.327017 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 340.163 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -43.45441 -41.47612 -39.75749 -39.68576 -37.30007 -37.24508 -35.91625 -35.75442 -34.24516 -32.15065 -30.78266 -30.23835 -28.80089 -28.12078 -25.71008 -24.93489 -24.06451 -23.78659 -22.10848 -21.34195 -20.38176 -19.83744 -19.15639 -18.91851 -18.01646 -17.75284 -17.62242 -17.14299 -16.83008 -16.48375 -16.34609 -16.27035 -16.03907 -15.92525 -15.34201 -15.26442 -15.05933 -14.99776 -14.71440 -14.50017 -14.31897 -14.13233 -13.73482 -13.42531 -13.37315 -13.07540 -12.87497 -12.59265 -12.50360 -12.21468 -12.08923 -11.88405 -11.79960 -11.75509 -11.54916 -11.43767 -11.18300 -11.01544 -10.74932 -10.44649 -9.73722 -9.28932 -8.01571 -5.33630 0.56281 0.93960 1.30518 1.36366 1.38615 1.46798 1.62945 1.98568 2.23723 2.48362 2.72018 2.99228 3.21391 3.31155 3.50833 3.66141 3.72784 3.86869 3.92952 3.98411 4.09402 4.13944 4.25359 4.27014 4.28573 4.32451 4.45613 4.59391 4.61939 4.72476 4.76356 4.81722 4.94713 5.01649 5.15563 5.21070 5.56071 5.77995 5.78743 5.91942 6.10677 6.17576 6.24923 6.29887 6.82988 7.03930 7.08907 7.84535 8.05306 9.20210 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.015339 B = 0.003109 C = 0.002887 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1824.934971 B = 9005.018245 C = 9697.599178 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.178 3.822 3 H 0.058 0.942 4 N -0.743 5.743 5 C -0.223 4.223 6 H 0.059 0.941 7 C -0.063 4.063 8 N -0.985 5.985 9 Si 0.948 3.052 10 H -0.284 1.284 11 H -0.296 1.296 12 H -0.250 1.250 13 C 0.093 3.907 14 H 0.080 0.920 15 C 0.091 3.909 16 N -0.609 5.609 17 C 0.495 3.505 18 O -0.578 6.578 19 C 0.103 3.897 20 N -0.570 5.570 21 C 0.515 3.485 22 O -0.501 6.501 23 C 0.076 3.924 24 N -0.707 5.707 25 C 0.700 3.300 26 O -0.582 6.582 27 C 0.061 3.939 28 C 0.040 3.960 29 O -0.383 6.383 30 H 0.034 0.966 31 H 0.068 0.932 32 H 0.055 0.945 33 H 0.368 0.632 34 H 0.256 0.744 35 H 0.065 0.935 36 H 0.077 0.923 37 H 0.151 0.849 38 H 0.153 0.847 39 H 0.148 0.852 40 H 0.170 0.830 41 H 0.456 0.544 42 H 0.135 0.865 43 H 0.085 0.915 44 H 0.067 0.933 45 H 0.137 0.863 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.841 -9.208 -30.493 33.057 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C 0.069 3.931 3 H 0.076 0.924 4 N -0.387 5.387 5 C -0.354 4.354 6 H 0.077 0.923 7 C -0.255 4.255 8 N -0.636 5.636 9 Si 0.776 3.224 10 H -0.210 1.210 11 H -0.223 1.223 12 H -0.174 1.174 13 C 0.034 3.966 14 H 0.097 0.903 15 C -0.032 4.032 16 N -0.342 5.342 17 C 0.283 3.717 18 O -0.457 6.457 19 C -0.022 4.022 20 N -0.315 5.315 21 C 0.305 3.695 22 O -0.373 6.373 23 C -0.050 4.050 24 N -0.372 5.372 25 C 0.400 3.600 26 O -0.459 6.459 27 C -0.060 4.060 28 C -0.037 4.037 29 O -0.302 6.302 30 H 0.054 0.946 31 H 0.087 0.913 32 H 0.074 0.926 33 H 0.202 0.798 34 H 0.065 0.935 35 H 0.083 0.917 36 H 0.095 0.905 37 H 0.169 0.831 38 H 0.170 0.830 39 H 0.165 0.835 40 H 0.187 0.813 41 H 0.303 0.697 42 H 0.153 0.847 43 H 0.103 0.897 44 H 0.086 0.914 45 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges 8.655 -8.807 -29.847 32.301 hybrid contribution 0.371 -0.215 0.648 0.777 sum 9.026 -9.022 -29.199 31.866 Atomic orbital electron populations 1.22125 0.96354 1.01708 1.00587 1.20453 0.94037 0.94614 0.83954 0.92386 1.42702 1.79728 1.09577 1.06689 1.19035 1.34623 0.94377 0.87380 0.92342 1.25416 1.02601 1.02207 0.95227 1.69877 1.54949 1.37594 1.01157 0.85495 0.78328 0.81462 0.77102 1.21023 1.22273 1.17445 1.22594 0.90455 0.85090 0.98508 0.90270 1.22103 0.95724 0.96201 0.89167 1.48260 1.36582 1.20031 1.29375 1.21487 0.79150 0.87441 0.83639 1.90700 1.56476 1.24754 1.73815 1.21665 0.92542 0.95490 0.92474 1.46014 1.09529 1.46175 1.29779 1.21725 0.82229 0.80562 0.84977 1.90837 1.72225 1.41438 1.32787 1.22714 0.90812 0.99402 0.92065 1.45332 1.04346 1.51828 1.35742 1.15973 0.85696 0.78644 0.79655 1.90993 1.25546 1.63871 1.65444 1.22915 0.94287 0.83158 1.05657 1.23277 0.93451 0.98615 0.88357 1.88052 1.71194 1.26639 1.44294 0.94649 0.91271 0.92572 0.79845 0.93477 0.91718 0.90470 0.83109 0.82994 0.83507 0.81264 0.69694 0.84747 0.89664 0.91427 0.84543 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -5.19 9.30 71.98 0.67 -4.52 16 2 C 0.18 6.84 2.80 44.99 0.13 6.97 16 3 H 0.06 2.35 8.08 -2.38 -0.02 2.33 16 4 N -0.74 -35.11 4.05 -322.95 -1.31 -36.41 16 5 C -0.22 -12.89 10.41 84.03 0.87 -12.01 16 6 H 0.06 3.69 8.06 -2.91 -0.02 3.66 16 7 C -0.06 -3.81 5.50 84.86 0.47 -3.35 16 8 N -0.98 -64.52 13.97 21.65 0.30 -64.22 16 9 Si 0.95 46.90 27.74 68.60 1.90 48.81 16 10 H -0.28 -13.85 7.11 99.48 0.71 -13.14 16 11 H -0.30 -14.77 7.11 99.48 0.71 -14.06 16 12 H -0.25 -11.26 6.52 99.48 0.65 -10.61 16 13 C 0.09 2.90 2.57 30.69 0.08 2.98 16 14 H 0.08 2.22 8.14 -2.39 -0.02 2.20 16 15 C 0.09 3.08 5.82 86.36 0.50 3.59 16 16 N -0.61 -15.86 3.02 -817.35 -2.47 -18.32 16 17 C 0.49 13.66 7.78 87.66 0.68 14.34 16 18 O -0.58 -21.45 15.90 -3.02 -0.05 -21.50 16 19 C 0.10 1.81 4.56 85.63 0.39 2.20 16 20 N -0.57 -10.83 2.09 -777.21 -1.63 -12.45 16 21 C 0.52 8.88 8.32 87.94 0.73 9.61 16 22 O -0.50 -12.10 17.76 -2.92 -0.05 -12.15 16 23 C 0.08 0.45 7.97 85.76 0.68 1.14 16 24 N -0.71 -6.65 6.58 -480.31 -3.16 -9.82 16 25 C 0.70 13.60 8.62 179.44 1.55 15.14 16 26 O -0.58 -15.68 17.48 -3.82 -0.07 -15.75 16 27 C 0.06 1.00 6.54 86.35 0.56 1.57 16 28 C 0.04 0.69 6.99 72.08 0.50 1.19 16 29 O -0.38 -10.80 9.25 -148.98 -1.38 -12.17 16 30 H 0.03 1.38 8.14 -2.39 -0.02 1.36 16 31 H 0.07 1.97 8.14 -2.39 -0.02 1.95 16 32 H 0.06 1.97 7.57 -2.39 -0.02 1.95 16 33 H 0.37 17.07 4.94 -92.71 -0.46 16.61 16 34 H 0.26 16.05 8.31 -92.71 -0.77 15.28 16 35 H 0.06 2.52 6.94 -2.39 -0.02 2.51 16 36 H 0.08 2.94 7.08 -2.39 -0.02 2.92 16 37 H 0.15 1.85 7.88 -2.39 -0.02 1.83 16 38 H 0.15 1.86 7.37 -2.39 -0.02 1.84 16 39 H 0.15 0.44 8.14 -2.39 -0.02 0.42 16 40 H 0.17 -0.35 8.14 -2.39 -0.02 -0.37 16 41 H 0.46 1.82 8.96 -92.70 -0.83 0.99 16 42 H 0.13 0.95 6.05 -2.39 -0.01 0.94 16 43 H 0.09 1.44 8.14 -2.38 -0.02 1.42 16 44 H 0.07 1.02 8.14 -2.39 -0.02 1.00 16 45 H 0.14 1.55 8.14 -2.39 -0.02 1.53 16 Total: -1.00 -92.24 372.12 -0.38 -92.62 By element: Atomic # 1 Polarization: 22.84 SS G_CDS: -0.30 Total: 22.54 kcal Atomic # 6 Polarization: 31.02 SS G_CDS: 7.82 Total: 38.84 kcal Atomic # 7 Polarization: -132.97 SS G_CDS: -8.26 Total: -141.23 kcal Atomic # 8 Polarization: -60.04 SS G_CDS: -1.54 Total: -61.58 kcal Atomic # 14 Polarization: 46.90 SS G_CDS: 1.90 Total: 48.81 kcal Total: -92.24 -0.38 -92.62 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001755447658.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -22.488 kcal (2) G-P(sol) polarization free energy of solvation -92.237 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -114.725 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.380 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -92.617 kcal (6) G-S(sol) free energy of system = (1) + (5) -115.105 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds