Wall clock time and date at job start Sat Apr 11 2020 06:00:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08990 * 109.47173 * 2 1 4 4 N 1.46499 * 109.46843 * 120.00201 * 2 1 3 5 5 C 1.36935 * 119.99926 * 274.99989 * 4 2 1 6 6 H 1.08005 * 119.99877 * 359.97438 * 5 4 2 7 7 C 1.38811 * 120.00369 * 179.73019 * 5 4 2 8 8 N 1.31617 * 119.99773 * 359.97438 * 7 5 4 9 9 Si 1.86800 * 120.00451 * 180.02562 * 7 5 4 10 10 H 1.48497 * 109.47050 * 59.99408 * 9 7 5 11 11 H 1.48496 * 109.47289 * 179.97438 * 9 7 5 12 12 H 1.48508 * 109.46855 * 299.99389 * 9 7 5 13 13 C 1.52997 * 109.47053 * 239.99634 * 2 1 3 14 14 H 1.09006 * 109.51126 * 184.99727 * 13 2 1 15 15 C 1.53296 * 109.51206 * 64.90104 * 13 2 1 16 16 N 1.47152 * 108.38901 * 187.77162 * 15 13 2 17 17 C 1.34776 * 120.98127 * 230.56326 * 16 15 13 18 18 O 1.21277 * 120.00287 * 359.97438 * 17 16 15 19 19 C 1.50707 * 119.99589 * 179.97438 * 17 16 15 20 20 N 1.46498 * 109.46980 * 179.97438 * 19 17 16 21 21 C 1.34766 * 124.17628 * 269.72305 * 20 19 17 22 22 O 1.21231 * 127.16001 * 0.02562 * 21 20 19 23 23 C 1.51582 * 105.68409 * 179.97438 * 21 20 19 24 24 N 1.47310 * 103.59370 * 0.32103 * 23 21 20 25 25 C 1.33796 * 124.18208 * 90.02084 * 20 19 17 26 26 O 1.21546 * 123.76410 * 359.96138 * 25 20 19 27 27 C 1.47151 * 118.03239 * 50.53234 * 16 15 13 28 28 C 1.53289 * 108.38681 * 309.46609 * 27 16 15 29 29 O 1.42960 * 109.51691 * 305.10322 * 13 2 1 30 30 H 1.08997 * 109.47450 * 300.00199 * 1 2 3 31 31 H 1.08998 * 109.47317 * 60.00174 * 1 2 3 32 32 H 1.09007 * 109.47248 * 179.97438 * 1 2 3 33 33 H 0.97005 * 120.00261 * 95.00113 * 4 2 1 34 34 H 0.97004 * 120.00382 * 180.02562 * 8 7 5 35 35 H 1.09000 * 109.68396 * 307.49868 * 15 13 2 36 36 H 1.09008 * 109.68154 * 68.04589 * 15 13 2 37 37 H 1.09000 * 109.46869 * 299.99116 * 19 17 16 38 38 H 1.08996 * 109.47514 * 59.99380 * 19 17 16 39 39 H 1.09001 * 110.77237 * 241.71126 * 23 21 20 40 40 H 1.09003 * 110.56501 * 118.83368 * 23 21 20 41 41 H 0.97006 * 126.68976 * 179.83568 * 24 23 21 42 42 H 1.08995 * 109.68172 * 69.19319 * 27 16 15 43 43 H 1.08999 * 109.67716 * 189.74474 * 27 16 15 44 44 H 1.09005 * 109.51503 * 172.22814 * 28 27 16 45 45 H 1.09006 * 109.51733 * 292.32810 * 28 27 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 7 2.0182 -0.6907 1.1962 5 6 2.1490 -0.0076 2.3757 6 1 1.8925 1.0405 2.4241 7 6 2.6063 -0.6632 3.5106 8 7 2.9138 -1.9417 3.4529 9 14 2.7840 0.2684 5.1199 10 1 1.4626 0.8103 5.5266 11 1 3.2862 -0.6517 6.1717 12 1 3.7440 1.3872 4.9407 13 6 2.0400 -0.7213 -1.2492 14 1 3.1263 -0.7999 -1.2062 15 6 1.6328 0.0683 -2.4985 16 7 1.9677 -0.7350 -3.6850 17 6 2.6736 -0.2063 -4.7041 18 8 3.0423 0.9479 -4.6519 19 6 3.0048 -1.0494 -5.9085 20 7 3.7717 -0.2507 -6.8678 21 6 3.2197 0.4824 -7.8548 22 8 2.0398 0.6012 -8.1066 23 6 4.3811 1.1286 -8.5838 24 7 5.5639 0.6323 -7.8594 25 6 5.1068 -0.1633 -6.8758 26 8 5.8262 -0.7398 -6.0837 27 6 1.5098 -2.1329 -3.7256 28 6 1.9230 -2.8153 -2.4166 29 8 1.4686 -2.0303 -1.3115 30 1 -0.3634 0.5138 0.8899 31 1 -0.3634 0.5138 -0.8900 32 1 -0.3634 -1.0277 -0.0005 33 1 2.2490 -1.6319 1.1526 34 1 3.2330 -2.4001 4.2460 35 1 0.5603 0.2619 -2.4770 36 1 2.1762 1.0127 -2.5292 37 1 3.5962 -1.9106 -5.5976 38 1 2.0823 -1.3921 -6.3770 39 1 4.3207 2.2151 -8.5207 40 1 4.4062 0.8070 -9.6250 41 1 6.4914 0.8398 -8.0531 42 1 0.4250 -2.1610 -3.8277 43 1 1.9718 -2.6461 -4.5689 44 1 1.4755 -3.8080 -2.3664 45 1 3.0089 -2.9031 -2.3787 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001755447661.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:00:52 Heat of formation + Delta-G solvation = -85.552037 kcal Electronic energy + Delta-G solvation = -30499.515252 eV Core-core repulsion = 26133.469740 eV Total energy + Delta-G solvation = -4366.045511 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 340.163 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -42.75978 -40.38805 -38.95237 -38.47422 -36.46622 -35.56818 -35.06164 -34.61249 -32.51587 -30.52058 -29.49468 -28.43542 -28.01531 -26.79249 -24.72555 -23.48660 -23.34067 -22.62947 -21.24180 -19.70390 -19.41090 -18.44731 -18.10024 -17.31975 -17.14887 -16.87000 -16.50740 -15.96818 -15.74753 -15.59047 -15.53148 -15.07666 -14.61507 -14.54765 -14.47617 -14.38037 -14.08400 -13.64469 -13.59435 -13.31452 -12.88541 -12.59118 -12.53830 -12.21775 -12.00234 -11.41232 -11.32628 -11.13050 -10.85691 -10.81272 -10.71680 -10.69043 -10.53543 -10.28924 -10.05600 -9.96049 -9.85022 -9.71717 -9.61773 -8.86951 -8.56908 -6.91288 -5.71045 -2.99855 1.23069 1.62445 2.30633 2.48257 2.70483 2.85018 3.47585 3.51758 3.52795 3.54792 3.94322 4.08330 4.26137 4.50878 4.58922 4.62501 4.65698 4.70920 4.78390 4.96349 5.04611 5.12247 5.17514 5.31529 5.39963 5.61231 5.65562 5.70553 5.79026 5.97207 5.99599 6.17322 6.30809 6.31986 6.47445 6.57999 6.66355 6.83530 6.91404 7.09586 7.17858 7.46161 7.69954 7.73502 7.85651 8.47118 9.58881 10.16319 10.53035 11.51338 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.019512 B = 0.002453 C = 0.002375 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1434.697236 B =11412.537291 C =11786.081033 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.185 3.815 3 H 0.059 0.941 4 N -0.719 5.719 5 C -0.240 4.240 6 H 0.070 0.930 7 C -0.013 4.013 8 N -0.931 5.931 9 Si 0.907 3.093 10 H -0.286 1.286 11 H -0.291 1.291 12 H -0.286 1.286 13 C 0.076 3.924 14 H 0.065 0.935 15 C 0.084 3.916 16 N -0.608 5.608 17 C 0.504 3.496 18 O -0.530 6.530 19 C 0.102 3.898 20 N -0.562 5.562 21 C 0.526 3.474 22 O -0.467 6.467 23 C 0.066 3.934 24 N -0.727 5.727 25 C 0.706 3.294 26 O -0.536 6.536 27 C 0.069 3.931 28 C 0.045 3.955 29 O -0.356 6.356 30 H 0.052 0.948 31 H 0.034 0.966 32 H 0.057 0.943 33 H 0.389 0.611 34 H 0.255 0.745 35 H 0.083 0.917 36 H 0.100 0.900 37 H 0.128 0.872 38 H 0.126 0.874 39 H 0.126 0.874 40 H 0.125 0.875 41 H 0.443 0.557 42 H 0.084 0.916 43 H 0.088 0.912 44 H 0.106 0.894 45 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.639 0.744 -29.156 29.172 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C 0.074 3.926 3 H 0.077 0.923 4 N -0.360 5.360 5 C -0.371 4.371 6 H 0.088 0.912 7 C -0.209 4.209 8 N -0.579 5.579 9 Si 0.738 3.262 10 H -0.213 1.213 11 H -0.217 1.217 12 H -0.213 1.213 13 C 0.016 3.984 14 H 0.083 0.917 15 C -0.039 4.039 16 N -0.342 5.342 17 C 0.290 3.710 18 O -0.406 6.406 19 C -0.024 4.024 20 N -0.308 5.308 21 C 0.313 3.687 22 O -0.336 6.336 23 C -0.061 4.061 24 N -0.393 5.393 25 C 0.407 3.593 26 O -0.408 6.408 27 C -0.054 4.054 28 C -0.033 4.033 29 O -0.274 6.274 30 H 0.071 0.929 31 H 0.053 0.947 32 H 0.076 0.924 33 H 0.223 0.777 34 H 0.065 0.935 35 H 0.101 0.899 36 H 0.118 0.882 37 H 0.146 0.854 38 H 0.144 0.856 39 H 0.144 0.856 40 H 0.143 0.857 41 H 0.287 0.713 42 H 0.102 0.898 43 H 0.106 0.894 44 H 0.124 0.876 45 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges 0.396 1.117 -28.492 28.516 hybrid contribution 0.685 0.279 0.640 0.978 sum 1.081 1.396 -27.852 27.908 Atomic orbital electron populations 1.22417 0.98631 1.01637 0.99544 1.20186 0.92831 0.94599 0.84941 0.92326 1.42341 1.77870 1.10960 1.04856 1.19200 1.36794 0.93781 0.87303 0.91240 1.24736 1.02233 0.95938 0.97991 1.69667 1.50922 1.08494 1.28840 0.86278 0.77756 0.78585 0.83619 1.21302 1.21739 1.21303 1.22989 0.97735 0.82997 0.94638 0.91746 1.22537 1.02068 0.95815 0.83449 1.48119 1.54286 1.13012 1.18829 1.20646 0.78100 0.88149 0.84095 1.90723 1.52544 1.17603 1.79691 1.21503 0.98538 0.93925 0.88388 1.45840 1.08073 1.46389 1.30536 1.20908 0.89993 0.77810 0.79945 1.90835 1.15725 1.59479 1.67535 1.22445 0.82874 1.02414 0.98413 1.45342 1.09535 1.51016 1.33357 1.15769 0.81491 0.80227 0.81834 1.91058 1.58522 1.49645 1.41601 1.22593 1.01192 0.81390 1.00229 1.22910 0.99756 0.95248 0.85398 1.88112 1.67661 1.25757 1.45904 0.92874 0.94699 0.92401 0.77659 0.93517 0.89852 0.88210 0.85408 0.85602 0.85642 0.85728 0.71257 0.89809 0.89355 0.87615 0.92629 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.01 9.06 37.16 0.34 -2.67 16 2 C 0.19 3.76 2.77 -67.93 -0.19 3.57 16 3 H 0.06 1.19 8.08 -51.93 -0.42 0.77 16 4 N -0.72 -18.45 5.10 -53.43 -0.27 -18.72 16 5 C -0.24 -6.76 9.93 -15.06 -0.15 -6.90 16 6 H 0.07 1.89 7.83 -52.48 -0.41 1.48 16 7 C -0.01 -0.38 5.50 -17.43 -0.10 -0.47 16 8 N -0.93 -28.61 13.06 55.49 0.72 -27.89 16 9 Si 0.91 22.76 29.55 -169.99 -5.02 17.73 16 10 H -0.29 -7.06 7.11 56.52 0.40 -6.66 16 11 H -0.29 -7.37 7.11 56.52 0.40 -6.96 16 12 H -0.29 -7.08 7.11 56.52 0.40 -6.68 16 13 C 0.08 1.31 2.61 -26.58 -0.07 1.24 16 14 H 0.06 1.23 8.14 -51.93 -0.42 0.81 16 15 C 0.08 1.23 5.82 -3.53 -0.02 1.21 16 16 N -0.61 -7.71 3.02 -172.28 -0.52 -8.23 16 17 C 0.50 6.77 7.78 -10.98 -0.09 6.69 16 18 O -0.53 -9.12 15.90 5.56 0.09 -9.03 16 19 C 0.10 0.96 4.55 -5.19 -0.02 0.94 16 20 N -0.56 -5.62 2.09 -122.02 -0.26 -5.88 16 21 C 0.53 4.62 8.31 -10.56 -0.09 4.53 16 22 O -0.47 -5.34 17.75 5.60 0.10 -5.24 16 23 C 0.07 0.27 7.97 -4.32 -0.03 0.24 16 24 N -0.73 -4.31 6.58 -65.74 -0.43 -4.74 16 25 C 0.71 7.49 8.62 -88.02 -0.76 6.73 16 26 O -0.54 -7.79 17.48 5.33 0.09 -7.70 16 27 C 0.07 0.64 6.54 -3.54 -0.02 0.62 16 28 C 0.05 0.53 6.98 37.31 0.26 0.79 16 29 O -0.36 -5.94 9.24 -35.23 -0.33 -6.27 16 30 H 0.05 1.05 8.14 -51.93 -0.42 0.63 16 31 H 0.03 0.54 6.42 -51.93 -0.33 0.20 16 32 H 0.06 1.12 7.56 -51.92 -0.39 0.73 16 33 H 0.39 10.76 7.58 -40.82 -0.31 10.45 16 34 H 0.25 7.59 8.31 -40.82 -0.34 7.25 16 35 H 0.08 1.16 6.27 -51.93 -0.33 0.84 16 36 H 0.10 1.59 7.08 -51.92 -0.37 1.22 16 37 H 0.13 1.02 7.38 -51.93 -0.38 0.63 16 38 H 0.13 0.85 7.87 -51.93 -0.41 0.45 16 39 H 0.13 0.33 8.14 -51.93 -0.42 -0.10 16 40 H 0.13 0.12 8.14 -51.93 -0.42 -0.31 16 41 H 0.44 1.52 8.96 -40.82 -0.37 1.15 16 42 H 0.08 0.70 8.14 -51.93 -0.42 0.28 16 43 H 0.09 0.51 6.05 -51.93 -0.31 0.20 16 44 H 0.11 0.99 8.14 -51.93 -0.42 0.57 16 45 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 LS Contribution 373.96 15.07 5.64 5.64 Total: -1.00 -39.35 373.96 -7.25 -46.60 By element: Atomic # 1 Polarization: 13.35 SS G_CDS: -6.13 Total: 7.22 kcal Atomic # 6 Polarization: 17.46 SS G_CDS: -0.94 Total: 16.52 kcal Atomic # 7 Polarization: -64.71 SS G_CDS: -0.76 Total: -65.46 kcal Atomic # 8 Polarization: -28.20 SS G_CDS: -0.04 Total: -28.25 kcal Atomic # 14 Polarization: 22.76 SS G_CDS: -5.02 Total: 17.73 kcal Total LS contribution 5.64 Total: 5.64 kcal Total: -39.35 -7.25 -46.60 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001755447661.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -38.952 kcal (2) G-P(sol) polarization free energy of solvation -39.346 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -78.298 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.254 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.600 kcal (6) G-S(sol) free energy of system = (1) + (5) -85.552 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds