Wall clock time and date at job start Sat Apr 11 2020 06:00:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08990 * 109.47173 * 2 1 4 4 N 1.46499 * 109.46843 * 120.00201 * 2 1 3 5 5 C 1.36935 * 119.99926 * 274.99989 * 4 2 1 6 6 H 1.08005 * 119.99877 * 359.97438 * 5 4 2 7 7 C 1.38811 * 120.00369 * 179.73019 * 5 4 2 8 8 N 1.31617 * 119.99773 * 359.97438 * 7 5 4 9 9 Si 1.86800 * 120.00451 * 180.02562 * 7 5 4 10 10 H 1.48497 * 109.47050 * 59.99408 * 9 7 5 11 11 H 1.48496 * 109.47289 * 179.97438 * 9 7 5 12 12 H 1.48508 * 109.46855 * 299.99389 * 9 7 5 13 13 C 1.52997 * 109.47053 * 239.99634 * 2 1 3 14 14 H 1.09006 * 109.51126 * 184.99727 * 13 2 1 15 15 C 1.53296 * 109.51206 * 64.90104 * 13 2 1 16 16 N 1.47152 * 108.38901 * 187.77162 * 15 13 2 17 17 C 1.34776 * 120.98127 * 230.56326 * 16 15 13 18 18 O 1.21277 * 120.00287 * 359.97438 * 17 16 15 19 19 C 1.50707 * 119.99589 * 179.97438 * 17 16 15 20 20 N 1.46498 * 109.46980 * 179.97438 * 19 17 16 21 21 C 1.34766 * 124.17628 * 269.72305 * 20 19 17 22 22 O 1.21231 * 127.16001 * 0.02562 * 21 20 19 23 23 C 1.51582 * 105.68409 * 179.97438 * 21 20 19 24 24 N 1.47310 * 103.59370 * 0.32103 * 23 21 20 25 25 C 1.33796 * 124.18208 * 90.02084 * 20 19 17 26 26 O 1.21546 * 123.76410 * 359.96138 * 25 20 19 27 27 C 1.47151 * 118.03239 * 50.53234 * 16 15 13 28 28 C 1.53289 * 108.38681 * 309.46609 * 27 16 15 29 29 O 1.42960 * 109.51691 * 305.10322 * 13 2 1 30 30 H 1.08997 * 109.47450 * 300.00199 * 1 2 3 31 31 H 1.08998 * 109.47317 * 60.00174 * 1 2 3 32 32 H 1.09007 * 109.47248 * 179.97438 * 1 2 3 33 33 H 0.97005 * 120.00261 * 95.00113 * 4 2 1 34 34 H 0.97004 * 120.00382 * 180.02562 * 8 7 5 35 35 H 1.09000 * 109.68396 * 307.49868 * 15 13 2 36 36 H 1.09008 * 109.68154 * 68.04589 * 15 13 2 37 37 H 1.09000 * 109.46869 * 299.99116 * 19 17 16 38 38 H 1.08996 * 109.47514 * 59.99380 * 19 17 16 39 39 H 1.09001 * 110.77237 * 241.71126 * 23 21 20 40 40 H 1.09003 * 110.56501 * 118.83368 * 23 21 20 41 41 H 0.97006 * 126.68976 * 179.83568 * 24 23 21 42 42 H 1.08995 * 109.68172 * 69.19319 * 27 16 15 43 43 H 1.08999 * 109.67716 * 189.74474 * 27 16 15 44 44 H 1.09005 * 109.51503 * 172.22814 * 28 27 16 45 45 H 1.09006 * 109.51733 * 292.32810 * 28 27 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 7 2.0182 -0.6907 1.1962 5 6 2.1490 -0.0076 2.3757 6 1 1.8925 1.0405 2.4241 7 6 2.6063 -0.6632 3.5106 8 7 2.9138 -1.9417 3.4529 9 14 2.7840 0.2684 5.1199 10 1 1.4626 0.8103 5.5266 11 1 3.2862 -0.6517 6.1717 12 1 3.7440 1.3872 4.9407 13 6 2.0400 -0.7213 -1.2492 14 1 3.1263 -0.7999 -1.2062 15 6 1.6328 0.0683 -2.4985 16 7 1.9677 -0.7350 -3.6850 17 6 2.6736 -0.2063 -4.7041 18 8 3.0423 0.9479 -4.6519 19 6 3.0048 -1.0494 -5.9085 20 7 3.7717 -0.2507 -6.8678 21 6 3.2197 0.4824 -7.8548 22 8 2.0398 0.6012 -8.1066 23 6 4.3811 1.1286 -8.5838 24 7 5.5639 0.6323 -7.8594 25 6 5.1068 -0.1633 -6.8758 26 8 5.8262 -0.7398 -6.0837 27 6 1.5098 -2.1329 -3.7256 28 6 1.9230 -2.8153 -2.4166 29 8 1.4686 -2.0303 -1.3115 30 1 -0.3634 0.5138 0.8899 31 1 -0.3634 0.5138 -0.8900 32 1 -0.3634 -1.0277 -0.0005 33 1 2.2490 -1.6319 1.1526 34 1 3.2330 -2.4001 4.2460 35 1 0.5603 0.2619 -2.4770 36 1 2.1762 1.0127 -2.5292 37 1 3.5962 -1.9106 -5.5976 38 1 2.0823 -1.3921 -6.3770 39 1 4.3207 2.2151 -8.5207 40 1 4.4062 0.8070 -9.6250 41 1 6.4914 0.8398 -8.0531 42 1 0.4250 -2.1610 -3.8277 43 1 1.9718 -2.6461 -4.5689 44 1 1.4755 -3.8080 -2.3664 45 1 3.0089 -2.9031 -2.3787 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001755447661.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:00:52 Heat of formation + Delta-G solvation = -118.502129 kcal Electronic energy + Delta-G solvation = -30500.944075 eV Core-core repulsion = 26133.469740 eV Total energy + Delta-G solvation = -4367.474335 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 340.163 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -43.44314 -41.46801 -39.73628 -39.65594 -37.24677 -37.15745 -35.84891 -35.74547 -34.34712 -32.05077 -30.35187 -29.98462 -28.67752 -27.91513 -26.37990 -24.93174 -24.06185 -23.79452 -22.12114 -21.19672 -20.35066 -19.33648 -19.14393 -18.88579 -18.01292 -17.71988 -17.56060 -17.06064 -16.81508 -16.67947 -16.31429 -16.24677 -16.04874 -15.83644 -15.33936 -15.31568 -15.11476 -14.99578 -14.59971 -14.52045 -14.10949 -14.01537 -13.65024 -13.41611 -13.23772 -13.00162 -12.81036 -12.45788 -12.40649 -12.23436 -12.20882 -11.90965 -11.78206 -11.65553 -11.53370 -11.42207 -11.18054 -10.93931 -10.74311 -10.43557 -9.68591 -9.01893 -7.92808 -5.21743 0.57953 0.94936 1.30562 1.46273 1.49762 1.55594 1.64112 1.99433 2.25801 2.56095 2.76789 3.00903 3.22017 3.40592 3.54912 3.67920 3.87357 3.92709 3.96740 4.01343 4.10437 4.23380 4.26996 4.30597 4.31899 4.35591 4.44686 4.58175 4.60103 4.63763 4.78856 4.83760 4.95237 5.07732 5.16718 5.24863 5.50128 5.60968 5.79332 5.93264 6.10550 6.23305 6.28822 6.31367 6.82955 7.04351 7.34723 8.10083 8.35205 9.30535 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.019512 B = 0.002453 C = 0.002375 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1434.697236 B =11412.537291 C =11786.081033 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.176 3.824 3 H 0.055 0.945 4 N -0.732 5.732 5 C -0.241 4.241 6 H 0.076 0.924 7 C -0.077 4.077 8 N -0.969 5.969 9 Si 0.973 3.027 10 H -0.277 1.277 11 H -0.295 1.295 12 H -0.279 1.279 13 C 0.092 3.908 14 H 0.035 0.965 15 C 0.094 3.906 16 N -0.609 5.609 17 C 0.497 3.503 18 O -0.576 6.576 19 C 0.101 3.899 20 N -0.569 5.569 21 C 0.518 3.482 22 O -0.498 6.498 23 C 0.075 3.925 24 N -0.708 5.708 25 C 0.697 3.303 26 O -0.586 6.586 27 C 0.071 3.929 28 C 0.035 3.965 29 O -0.380 6.380 30 H 0.036 0.964 31 H 0.070 0.930 32 H 0.048 0.952 33 H 0.375 0.625 34 H 0.250 0.750 35 H 0.097 0.903 36 H 0.083 0.917 37 H 0.144 0.856 38 H 0.158 0.842 39 H 0.150 0.850 40 H 0.169 0.831 41 H 0.455 0.545 42 H 0.104 0.896 43 H 0.130 0.870 44 H 0.134 0.866 45 H 0.045 0.955 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.072 1.152 -31.876 31.897 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C 0.067 3.933 3 H 0.073 0.927 4 N -0.373 5.373 5 C -0.373 4.373 6 H 0.094 0.906 7 C -0.269 4.269 8 N -0.620 5.620 9 Si 0.802 3.198 10 H -0.203 1.203 11 H -0.222 1.222 12 H -0.205 1.205 13 C 0.032 3.968 14 H 0.054 0.946 15 C -0.029 4.029 16 N -0.342 5.342 17 C 0.285 3.715 18 O -0.455 6.455 19 C -0.024 4.024 20 N -0.315 5.315 21 C 0.308 3.692 22 O -0.369 6.369 23 C -0.051 4.051 24 N -0.373 5.373 25 C 0.398 3.602 26 O -0.463 6.463 27 C -0.050 4.050 28 C -0.042 4.042 29 O -0.299 6.299 30 H 0.056 0.944 31 H 0.089 0.911 32 H 0.067 0.933 33 H 0.207 0.793 34 H 0.059 0.941 35 H 0.115 0.885 36 H 0.101 0.899 37 H 0.161 0.839 38 H 0.175 0.825 39 H 0.167 0.833 40 H 0.187 0.813 41 H 0.302 0.698 42 H 0.122 0.878 43 H 0.148 0.852 44 H 0.152 0.848 45 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges -0.335 1.562 -31.296 31.337 hybrid contribution 0.892 0.149 1.370 1.642 sum 0.557 1.711 -29.926 29.980 Atomic orbital electron populations 1.22203 0.96678 1.01307 1.00486 1.20415 0.94035 0.94348 0.84494 0.92695 1.42513 1.78352 1.10459 1.05950 1.19607 1.35259 0.94148 0.88294 0.90623 1.25568 1.02998 0.96885 1.01458 1.69834 1.52691 1.10094 1.29365 0.85215 0.77985 0.77259 0.79324 1.20303 1.22167 1.20533 1.22525 0.95795 0.84016 0.94452 0.94646 1.22229 1.02376 0.94947 0.83385 1.48222 1.54008 1.14162 1.17846 1.21413 0.77060 0.88028 0.85011 1.90691 1.54262 1.19799 1.80785 1.21671 1.00224 0.93409 0.87056 1.46006 1.08079 1.46631 1.30750 1.21647 0.90639 0.77230 0.79641 1.90819 1.17220 1.60488 1.68372 1.22740 0.79667 1.03230 0.99418 1.45348 1.10826 1.49231 1.31915 1.16038 0.81488 0.80518 0.82192 1.91020 1.59551 1.51947 1.43762 1.22837 1.02715 0.79348 1.00116 1.23249 0.99533 0.96132 0.85283 1.88059 1.67805 1.25519 1.48503 0.94447 0.91130 0.93281 0.79260 0.94095 0.88520 0.89894 0.83880 0.82477 0.83267 0.81334 0.69789 0.87832 0.85218 0.84832 0.93664 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -5.39 9.06 71.98 0.65 -4.74 16 2 C 0.18 7.28 2.77 44.99 0.12 7.41 16 3 H 0.06 2.29 8.08 -2.39 -0.02 2.27 16 4 N -0.73 -38.76 5.10 -322.96 -1.65 -40.40 16 5 C -0.24 -13.86 9.93 84.03 0.83 -13.02 16 6 H 0.08 4.15 7.83 -2.91 -0.02 4.13 16 7 C -0.08 -4.56 5.50 84.86 0.47 -4.09 16 8 N -0.97 -61.21 13.06 21.65 0.28 -60.92 16 9 Si 0.97 47.49 29.55 68.60 2.03 49.52 16 10 H -0.28 -12.96 7.11 99.48 0.71 -12.26 16 11 H -0.30 -14.48 7.11 99.48 0.71 -13.78 16 12 H -0.28 -13.16 7.11 99.48 0.71 -12.45 16 13 C 0.09 3.24 2.61 30.69 0.08 3.32 16 14 H 0.04 1.44 8.14 -2.38 -0.02 1.42 16 15 C 0.09 2.75 5.82 86.35 0.50 3.25 16 16 N -0.61 -14.70 3.02 -817.36 -2.47 -17.17 16 17 C 0.50 12.95 7.78 87.66 0.68 13.63 16 18 O -0.58 -20.03 15.90 -3.02 -0.05 -20.08 16 19 C 0.10 1.73 4.55 85.64 0.39 2.12 16 20 N -0.57 -10.50 2.09 -777.21 -1.63 -12.12 16 21 C 0.52 7.98 8.31 87.94 0.73 8.71 16 22 O -0.50 -10.48 17.75 -2.88 -0.05 -10.53 16 23 C 0.08 0.36 7.97 85.76 0.68 1.05 16 24 N -0.71 -6.74 6.58 -480.31 -3.16 -9.90 16 25 C 0.70 14.04 8.62 179.44 1.55 15.58 16 26 O -0.59 -17.11 17.48 -3.86 -0.07 -17.17 16 27 C 0.07 1.13 6.54 86.35 0.56 1.70 16 28 C 0.04 0.78 6.98 72.08 0.50 1.28 16 29 O -0.38 -12.64 9.24 -148.98 -1.38 -14.02 16 30 H 0.04 1.46 8.14 -2.39 -0.02 1.44 16 31 H 0.07 2.06 6.42 -2.39 -0.02 2.04 16 32 H 0.05 1.88 7.56 -2.38 -0.02 1.86 16 33 H 0.38 21.61 7.58 -92.70 -0.70 20.91 16 34 H 0.25 15.32 8.31 -92.71 -0.77 14.55 16 35 H 0.10 2.55 6.27 -2.39 -0.01 2.54 16 36 H 0.08 2.72 7.08 -2.38 -0.02 2.70 16 37 H 0.14 1.98 7.38 -2.39 -0.02 1.97 16 38 H 0.16 1.63 7.87 -2.39 -0.02 1.61 16 39 H 0.15 0.19 8.14 -2.39 -0.02 0.17 16 40 H 0.17 -0.52 8.14 -2.39 -0.02 -0.54 16 41 H 0.45 2.05 8.96 -92.70 -0.83 1.22 16 42 H 0.10 1.34 8.14 -2.39 -0.02 1.32 16 43 H 0.13 1.00 6.05 -2.39 -0.01 0.98 16 44 H 0.13 2.21 8.14 -2.38 -0.02 2.19 16 45 H 0.04 1.10 8.14 -2.38 -0.02 1.08 16 Total: -1.00 -90.39 373.96 -0.85 -91.24 By element: Atomic # 1 Polarization: 25.84 SS G_CDS: -0.48 Total: 25.36 kcal Atomic # 6 Polarization: 28.44 SS G_CDS: 7.76 Total: 36.21 kcal Atomic # 7 Polarization: -131.90 SS G_CDS: -8.62 Total: -140.52 kcal Atomic # 8 Polarization: -60.26 SS G_CDS: -1.54 Total: -61.81 kcal Atomic # 14 Polarization: 47.49 SS G_CDS: 2.03 Total: 49.52 kcal Total: -90.39 -0.85 -91.24 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001755447661.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -27.259 kcal (2) G-P(sol) polarization free energy of solvation -90.390 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -117.650 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.852 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -91.243 kcal (6) G-S(sol) free energy of system = (1) + (5) -118.502 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds