Wall clock time and date at job start Sat Apr 11 2020 06:01:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.09000 * 109.99138 * 2 1 4 4 C 1.54336 * 109.99030 * 238.96323 * 2 1 3 5 5 H 1.08994 * 110.66946 * 337.04816 * 4 2 1 6 6 N 1.46907 * 110.84787 * 100.19680 * 4 2 1 7 7 C 1.46896 * 110.99711 * 200.14471 * 6 4 2 8 8 C 1.50705 * 109.47103 * 179.97438 * 7 6 4 9 9 N 1.33313 * 126.55161 * 269.69058 * 8 7 6 10 10 N 1.28994 * 107.35405 * 179.83478 * 9 8 7 11 11 N 1.28782 * 108.72524 * 0.42705 * 10 9 8 12 12 C 1.46497 * 125.44845 * 179.72592 * 11 10 9 13 13 N 1.28877 * 109.10495 * 359.73226 * 11 10 9 14 14 C 1.55149 * 103.01966 * 218.66083 * 4 2 1 15 15 C 1.54912 * 101.58276 * 35.30714 * 14 4 2 16 16 N 1.47020 * 109.88388 * 121.09352 * 2 1 3 17 17 C 1.34777 * 125.64991 * 298.40045 * 16 2 1 18 18 O 1.21283 * 119.99750 * 359.71166 * 17 16 2 19 19 C 1.50702 * 119.99928 * 179.97438 * 17 16 2 20 20 S 1.80999 * 109.46903 * 179.72354 * 19 17 16 21 21 C 1.76200 * 99.99730 * 179.97438 * 20 19 17 22 22 H 1.08001 * 120.00351 * 0.02562 * 21 20 19 23 23 C 1.38796 * 120.00095 * 179.97438 * 21 20 19 24 24 N 1.31634 * 119.99941 * 359.97438 * 23 21 20 25 25 Si 1.86801 * 120.00384 * 180.02562 * 23 21 20 26 26 H 1.48500 * 109.46990 * 359.97438 * 25 23 21 27 27 H 1.48494 * 109.47522 * 119.99735 * 25 23 21 28 28 H 1.48500 * 109.47073 * 240.00101 * 25 23 21 29 29 H 1.08998 * 109.47283 * 300.35484 * 1 2 3 30 30 H 1.08998 * 109.47209 * 60.36324 * 1 2 3 31 31 H 1.09003 * 109.46983 * 180.35588 * 1 2 3 32 32 H 1.00898 * 110.99963 * 324.09379 * 6 4 2 33 33 H 1.08995 * 109.47253 * 299.99827 * 7 6 4 34 34 H 1.08999 * 109.47405 * 60.00397 * 7 6 4 35 35 H 1.09006 * 109.47281 * 270.00223 * 12 11 10 36 36 H 1.09002 * 109.47416 * 30.00213 * 12 11 10 37 37 H 1.08995 * 109.47333 * 150.00293 * 12 11 10 38 38 H 1.09006 * 111.00811 * 277.23838 * 14 4 2 39 39 H 1.08998 * 111.00493 * 153.38452 * 14 4 2 40 40 H 1.08993 * 110.36878 * 204.14992 * 15 14 4 41 41 H 1.08999 * 110.36498 * 81.82751 * 15 14 4 42 42 H 1.09004 * 109.46965 * 299.72211 * 19 17 16 43 43 H 1.08994 * 109.46990 * 59.72065 * 19 17 16 44 44 H 0.97002 * 120.00288 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9027 1.0243 0.0000 4 6 2.0577 -0.7478 -1.2427 5 1 1.3067 -1.4405 -1.6225 6 7 2.4648 0.1995 -2.2892 7 6 2.5089 -0.4551 -3.6035 8 6 2.9288 0.5456 -4.6492 9 7 2.1236 1.3281 -5.3679 10 7 2.8697 2.0384 -6.1443 11 7 4.1006 1.7194 -5.9401 12 6 5.2545 2.2989 -6.6319 13 7 4.1549 0.8086 -5.0298 14 6 3.2864 -1.5182 -0.6916 15 6 2.8100 -1.8824 0.7368 16 7 2.0301 -0.7140 1.1839 17 6 1.8074 -0.3620 2.4657 18 8 1.1475 0.6238 2.7179 19 6 2.3833 -1.1900 3.5854 20 16 1.9186 -0.4610 5.1756 21 6 2.7003 -1.5965 6.2728 22 1 3.2573 -2.4332 5.8775 23 6 2.6013 -1.4153 7.6454 24 7 1.9238 -0.3948 8.1273 25 14 3.4306 -2.6187 8.8087 26 1 4.1241 -3.6699 8.0218 27 1 4.4191 -1.8949 9.6478 28 1 2.4074 -3.2486 9.6814 29 1 -0.3634 0.5193 0.8868 30 1 -0.3633 0.5082 -0.8932 31 1 -0.3633 -1.0277 0.0064 32 1 1.8555 1.0035 -2.3060 33 1 3.2258 -1.2757 -3.5768 34 1 1.5207 -0.8438 -3.8492 35 1 5.4723 1.7156 -7.5267 36 1 5.0299 3.3274 -6.9144 37 1 6.1200 2.2848 -5.9696 38 1 4.1670 -0.8767 -0.6579 39 1 3.4808 -2.4154 -1.2792 40 1 3.6656 -2.0410 1.3931 41 1 2.1803 -2.7717 0.7115 42 1 1.9933 -2.2061 3.5237 43 1 3.4697 -1.2120 3.4993 44 1 1.8542 -0.2683 9.0865 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001755661183.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:01:01 Heat of formation + Delta-G solvation = 75.968761 kcal Electronic energy + Delta-G solvation = -26290.494915 eV Core-core repulsion = 22406.499093 eV Total energy + Delta-G solvation = -3883.995822 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.142 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -45.34431 -41.28143 -39.03415 -36.84803 -35.70602 -34.58602 -34.16295 -32.77638 -31.92625 -30.25196 -29.39647 -27.68408 -27.54904 -25.48959 -24.00711 -23.95652 -23.05027 -21.65266 -20.42606 -19.45085 -18.49145 -18.44401 -18.05356 -17.42830 -17.06571 -16.88344 -16.42803 -16.11116 -15.56219 -15.43612 -15.12667 -14.90602 -14.59976 -14.53451 -14.33610 -14.18411 -14.01344 -13.75743 -13.67027 -13.36687 -13.15722 -13.11279 -12.90898 -12.79283 -12.71568 -12.56084 -12.34791 -12.06607 -11.97151 -11.94006 -11.72427 -11.64198 -11.16159 -11.15765 -10.85920 -10.27235 -9.70084 -9.54764 -8.67630 -8.34657 -6.13185 0.19377 1.01066 1.15446 1.24822 1.41842 1.45360 1.57382 1.59656 2.07008 2.27373 2.78645 2.99541 3.18399 3.22761 3.33683 3.41802 3.65015 3.89393 4.05350 4.07732 4.23274 4.24959 4.28616 4.30415 4.35720 4.41532 4.46427 4.54370 4.58447 4.62598 4.72975 4.73408 4.80741 4.82693 4.99051 5.06835 5.21405 5.23164 5.27733 5.42045 5.46617 5.89530 6.14665 6.20128 6.43322 7.06509 7.15496 7.31361 8.74918 Molecular weight = 340.14amu Principal moments of inertia in cm(-1) A = 0.027033 B = 0.001818 C = 0.001786 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1035.520331 B =15394.842270 C =15676.618180 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C 0.133 3.867 3 H 0.061 0.939 4 C 0.095 3.905 5 H 0.093 0.907 6 N -0.680 5.680 7 C 0.162 3.838 8 C 0.163 3.837 9 N -0.310 5.310 10 N -0.084 5.084 11 N -0.130 5.130 12 C 0.078 3.922 13 N -0.303 5.303 14 C -0.111 4.111 15 C 0.089 3.911 16 N -0.612 5.612 17 C 0.546 3.454 18 O -0.564 6.564 19 C -0.119 4.119 20 S -0.152 6.152 21 C -0.545 4.545 22 H 0.083 0.917 23 C 0.012 3.988 24 N -0.912 5.912 25 Si 1.000 3.000 26 H -0.255 1.255 27 H -0.274 1.274 28 H -0.274 1.274 29 H 0.036 0.964 30 H 0.084 0.916 31 H 0.067 0.933 32 H 0.346 0.654 33 H 0.120 0.880 34 H 0.083 0.917 35 H 0.125 0.875 36 H 0.130 0.870 37 H 0.126 0.874 38 H 0.077 0.923 39 H 0.117 0.883 40 H 0.083 0.917 41 H 0.090 0.910 42 H 0.107 0.893 43 H 0.105 0.895 44 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.807 -3.601 -33.433 34.521 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C 0.030 3.970 3 H 0.079 0.921 4 C -0.015 4.015 5 H 0.110 0.890 6 N -0.313 5.313 7 C 0.031 3.969 8 C -0.120 4.120 9 N -0.181 5.181 10 N -0.077 5.077 11 N -0.044 5.044 12 C -0.060 4.060 13 N -0.155 5.155 14 C -0.150 4.150 15 C -0.033 4.033 16 N -0.347 5.347 17 C 0.334 3.666 18 O -0.443 6.443 19 C -0.270 4.270 20 S 0.075 5.925 21 C -0.692 4.692 22 H 0.102 0.898 23 C -0.192 4.192 24 N -0.548 5.548 25 Si 0.822 3.178 26 H -0.179 1.179 27 H -0.200 1.200 28 H -0.199 1.199 29 H 0.055 0.945 30 H 0.103 0.897 31 H 0.086 0.914 32 H 0.165 0.835 33 H 0.138 0.862 34 H 0.101 0.899 35 H 0.143 0.857 36 H 0.148 0.852 37 H 0.144 0.856 38 H 0.096 0.904 39 H 0.135 0.865 40 H 0.101 0.899 41 H 0.108 0.892 42 H 0.125 0.875 43 H 0.123 0.877 44 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 7.420 -1.624 -33.258 34.114 hybrid contribution 0.091 -1.419 0.951 1.711 sum 7.511 -3.044 -32.307 33.308 Atomic orbital electron populations 1.22117 0.94543 1.02720 1.02380 1.21646 0.94405 0.96303 0.84695 0.92111 1.22521 0.97104 0.93086 0.88767 0.88974 1.60441 1.58062 1.09736 1.03086 1.20231 1.02677 0.91413 0.82580 1.25837 0.84955 1.00666 1.00527 1.75804 1.27272 1.07779 1.07253 1.78905 0.89774 1.19700 1.19323 1.50582 1.08615 1.22314 1.22919 1.23015 0.82566 1.01715 0.98675 1.74709 1.24942 1.08952 1.06924 1.22857 0.97337 1.01478 0.93283 1.22708 0.95803 0.88023 0.96809 1.48432 1.53176 1.29513 1.03546 1.19757 0.79597 0.84425 0.82789 1.90677 1.41175 1.28795 1.83622 1.23303 1.04587 1.02888 0.96229 1.85601 1.71131 1.39884 0.95888 1.23231 1.38434 1.13920 0.93656 0.89850 1.26151 0.95752 0.97973 0.99336 1.70198 1.40378 1.30164 1.14107 0.84886 0.77875 0.77698 0.77364 1.17883 1.19956 1.19896 0.94501 0.89700 0.91424 0.83454 0.86157 0.89913 0.85690 0.85153 0.85554 0.90414 0.86489 0.89867 0.89176 0.87480 0.87692 0.91998 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.75 9.11 71.98 0.66 -3.09 16 2 C 0.13 3.10 2.99 45.35 0.14 3.24 16 3 H 0.06 1.69 7.97 -2.39 -0.02 1.67 16 4 C 0.10 1.34 2.77 46.10 0.13 1.47 16 5 H 0.09 0.93 7.60 -2.39 -0.02 0.91 16 6 N -0.68 -9.85 6.29 -489.44 -3.08 -12.93 16 7 C 0.16 1.89 6.17 85.56 0.53 2.42 16 8 C 0.16 2.87 7.88 138.55 1.09 3.96 16 9 N -0.31 -6.57 12.50 -51.26 -0.64 -7.21 16 10 N -0.08 -1.62 13.25 37.02 0.49 -1.13 16 11 N -0.13 -1.84 4.40 -206.73 -0.91 -2.75 16 12 C 0.08 0.15 11.63 127.77 1.49 1.64 16 13 N -0.30 -5.21 12.13 -51.20 -0.62 -5.83 16 14 C -0.11 -1.42 6.71 31.98 0.21 -1.21 16 15 C 0.09 1.60 6.69 86.86 0.58 2.18 16 16 N -0.61 -17.06 3.06 -788.03 -2.41 -19.48 16 17 C 0.55 21.52 7.66 87.66 0.67 22.20 16 18 O -0.56 -27.46 14.91 -3.04 -0.05 -27.51 16 19 C -0.12 -4.92 5.16 71.24 0.37 -4.55 16 20 S -0.15 -8.65 20.57 -56.49 -1.16 -9.81 16 21 C -0.54 -31.44 9.50 67.95 0.65 -30.79 16 22 H 0.08 4.46 7.80 -2.91 -0.02 4.44 16 23 C 0.01 0.72 5.49 84.86 0.47 1.18 16 24 N -0.91 -56.60 13.22 21.65 0.29 -56.32 16 25 Si 1.00 43.83 29.55 68.60 2.03 45.86 16 26 H -0.26 -10.39 7.11 99.48 0.71 -9.68 16 27 H -0.27 -11.67 7.11 99.48 0.71 -10.96 16 28 H -0.27 -11.62 7.11 99.48 0.71 -10.91 16 29 H 0.04 1.18 6.89 -2.39 -0.02 1.16 16 30 H 0.08 1.54 8.14 -2.39 -0.02 1.52 16 31 H 0.07 1.43 8.14 -2.39 -0.02 1.41 16 32 H 0.35 5.61 8.44 -89.70 -0.76 4.86 16 33 H 0.12 1.00 8.13 -2.39 -0.02 0.98 16 34 H 0.08 0.73 8.08 -2.39 -0.02 0.71 16 35 H 0.12 -0.30 8.14 -2.38 -0.02 -0.32 16 36 H 0.13 -0.21 8.14 -2.39 -0.02 -0.23 16 37 H 0.13 -0.09 8.14 -2.39 -0.02 -0.11 16 38 H 0.08 1.23 8.14 -2.38 -0.02 1.21 16 39 H 0.12 0.76 8.14 -2.39 -0.02 0.74 16 40 H 0.08 1.51 7.47 -2.39 -0.02 1.49 16 41 H 0.09 1.31 8.14 -2.39 -0.02 1.29 16 42 H 0.11 3.99 8.14 -2.39 -0.02 3.97 16 43 H 0.10 3.96 7.84 -2.40 -0.02 3.94 16 44 H 0.27 15.55 8.31 -92.71 -0.77 14.78 16 Total: -1.00 -86.75 384.80 1.17 -85.59 By element: Atomic # 1 Polarization: 12.61 SS G_CDS: 0.27 Total: 12.88 kcal Atomic # 6 Polarization: -8.34 SS G_CDS: 6.97 Total: -1.36 kcal Atomic # 7 Polarization: -98.75 SS G_CDS: -6.89 Total: -105.64 kcal Atomic # 8 Polarization: -27.46 SS G_CDS: -0.05 Total: -27.51 kcal Atomic # 14 Polarization: 43.83 SS G_CDS: 2.03 Total: 45.86 kcal Atomic # 16 Polarization: -8.65 SS G_CDS: -1.16 Total: -9.81 kcal Total: -86.75 1.17 -85.59 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001755661183.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 161.554 kcal (2) G-P(sol) polarization free energy of solvation -86.753 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 74.801 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.168 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -85.585 kcal (6) G-S(sol) free energy of system = (1) + (5) 75.969 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds