Wall clock time and date at job start Sat Apr 11 2020 05:59:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31630 * 1 3 3 Si 1.86799 * 119.99954 * 2 1 4 4 H 1.48508 * 109.47121 * 269.99318 * 3 2 1 5 5 H 1.48500 * 109.47470 * 29.99535 * 3 2 1 6 6 H 1.48507 * 109.47463 * 149.99733 * 3 2 1 7 7 C 1.38804 * 120.00188 * 179.97438 * 2 1 3 8 8 H 1.07997 * 119.99853 * 0.02562 * 7 2 1 9 9 S 1.76201 * 120.00158 * 180.02562 * 7 2 1 10 10 C 1.80997 * 99.99880 * 179.97438 * 9 7 2 11 11 C 1.50703 * 109.47106 * 180.02562 * 10 9 7 12 12 O 1.21282 * 120.00007 * 359.97438 * 11 10 9 13 13 N 1.34771 * 120.00352 * 180.02562 * 11 10 9 14 14 C 1.46492 * 120.00564 * 180.02562 * 13 11 10 15 15 C 1.53002 * 109.47489 * 180.02562 * 14 13 11 16 16 C 1.53003 * 109.47021 * 179.97438 * 15 14 13 17 17 N 1.46499 * 109.46878 * 179.97438 * 16 15 14 18 18 C 1.34773 * 120.00200 * 90.00116 * 17 16 15 19 19 O 1.21281 * 120.00188 * 177.27898 * 18 17 16 20 20 C 1.50703 * 119.99981 * 357.27311 * 18 17 16 21 21 C 1.53778 * 113.61743 * 254.59413 * 20 18 17 22 22 C 1.53773 * 87.08384 * 220.01870 * 21 20 18 23 23 C 1.53785 * 87.08234 * 25.43363 * 22 21 20 24 24 C 1.46504 * 119.99663 * 270.00075 * 17 16 15 25 25 C 1.53006 * 117.49526 * 197.38640 * 24 17 16 26 26 C 1.53003 * 117.49873 * 128.72871 * 24 17 16 27 27 H 0.96998 * 119.99728 * 0.02562 * 1 2 3 28 28 H 1.09005 * 109.47002 * 60.00151 * 10 9 7 29 29 H 1.08994 * 109.47281 * 299.99840 * 10 9 7 30 30 H 0.97005 * 119.99752 * 0.02562 * 13 11 10 31 31 H 1.08996 * 109.47257 * 59.99673 * 14 13 11 32 32 H 1.09002 * 109.46704 * 300.00108 * 14 13 11 33 33 H 1.08996 * 109.47205 * 59.99559 * 15 14 13 34 34 H 1.08994 * 109.46869 * 299.99592 * 15 14 13 35 35 H 1.09001 * 109.46755 * 59.99726 * 16 15 14 36 36 H 1.09002 * 109.46986 * 299.99911 * 16 15 14 37 37 H 1.08998 * 112.84709 * 25.89893 * 20 18 17 38 38 H 1.09007 * 113.61685 * 334.56953 * 21 20 18 39 39 H 1.08999 * 113.61289 * 105.46886 * 21 20 18 40 40 H 1.08994 * 113.61732 * 270.88676 * 22 21 20 41 41 H 1.09002 * 113.61520 * 139.98081 * 22 21 20 42 42 H 1.09003 * 113.61538 * 220.02119 * 23 22 21 43 43 H 1.08998 * 113.69193 * 89.12388 * 23 22 21 44 44 H 1.08994 * 115.55053 * 343.04978 * 24 17 16 45 45 H 1.09004 * 117.50120 * 359.97438 * 25 24 17 46 46 H 1.08998 * 117.50069 * 145.01895 * 25 24 17 47 47 H 1.08997 * 117.49507 * 214.97673 * 26 24 17 48 48 H 1.09002 * 117.49824 * 359.97359 * 26 24 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 2.4979 2.0464 -1.4001 5 1 1.4477 2.6527 0.6999 6 1 3.5479 1.4403 0.7001 7 6 2.0104 -1.2021 0.0005 8 1 1.4704 -2.1373 0.0005 9 16 3.7724 -1.2020 0.0012 10 6 4.0866 -2.9845 0.0025 11 6 5.5731 -3.2325 0.0039 12 8 6.3441 -2.2963 0.0035 13 7 6.0458 -4.4946 0.0045 14 6 7.4907 -4.7358 0.0064 15 6 7.7564 -6.2425 0.0061 16 6 9.2656 -6.4943 0.0075 17 7 9.5200 -7.9370 0.0078 18 6 9.6381 -8.6007 -1.1592 19 8 9.8976 -9.7855 -1.1595 20 6 9.4475 -7.8708 -2.4638 21 6 8.1083 -8.1807 -3.1532 22 6 8.8839 -8.1911 -4.4809 23 6 10.1312 -8.5562 -3.6587 24 6 9.6461 -8.6582 1.2768 25 6 10.3016 -10.0403 1.2417 26 6 8.7922 -9.9141 1.4634 27 1 -0.4849 0.8400 -0.0004 28 1 3.6440 -3.4321 -0.8874 29 1 3.6434 -3.4310 0.8926 30 1 5.4291 -5.2435 0.0037 31 1 7.9325 -4.2887 0.8969 32 1 7.9348 -4.2887 -0.8830 33 1 7.3147 -6.6892 -0.8846 34 1 7.3123 -6.6899 0.8953 35 1 9.7076 -6.0475 0.8981 36 1 9.7094 -6.0469 -0.8819 37 1 9.6650 -6.8055 -2.3884 38 1 7.6922 -9.1513 -2.8829 39 1 7.3814 -7.3719 -3.0785 40 1 8.9464 -7.2130 -4.9578 41 1 8.5668 -8.9776 -5.1657 42 1 11.0374 -8.0506 -3.9922 43 1 10.2696 -9.6292 -3.5260 44 1 9.8270 -8.0376 2.1543 45 1 10.6387 -10.4131 0.2744 46 1 10.9134 -10.3290 2.0963 47 1 8.4117 -10.1197 2.4639 48 1 8.1364 -10.2034 0.6423 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000343373555.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:59:44 Heat of formation + Delta-G solvation = -19.015752 kcal Electronic energy + Delta-G solvation = -26776.439141 eV Core-core repulsion = 22959.572074 eV Total energy + Delta-G solvation = -3816.867067 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 340.161 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -41.21752 -39.34897 -38.57656 -36.79797 -35.92976 -34.41604 -32.46147 -31.51392 -29.21793 -27.42333 -26.09478 -25.75040 -25.39599 -23.29366 -22.68754 -22.18781 -20.58649 -20.37320 -19.16540 -17.91037 -17.74266 -16.93599 -16.44461 -15.95540 -15.85458 -15.68491 -15.51564 -15.23796 -14.97637 -14.65663 -14.38594 -13.90088 -13.50378 -13.39138 -13.27941 -13.10670 -12.96106 -12.81685 -12.80218 -12.41794 -12.07756 -11.92643 -11.86076 -11.51364 -11.39162 -11.30832 -11.28429 -11.02895 -10.86953 -10.80372 -10.66151 -10.62459 -9.88449 -9.60867 -9.59453 -9.07393 -9.00896 -8.85553 -8.53126 -6.94654 -6.31068 -4.03120 2.09544 2.38310 2.74458 2.92189 3.27481 3.31850 3.48343 3.56274 3.64415 3.96512 4.12123 4.18825 4.24942 4.30909 4.40358 4.51606 4.54565 4.60615 4.61679 4.70671 4.76457 4.81610 4.94661 5.02749 5.07956 5.16759 5.22415 5.25126 5.26980 5.36581 5.43139 5.43332 5.50791 5.53374 5.63745 5.64070 5.70810 5.74678 5.81204 5.95306 5.97908 6.02514 6.36294 6.44820 6.92393 7.53661 7.79922 7.91957 8.39469 8.43047 9.14998 10.78129 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.018003 B = 0.001949 C = 0.001859 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1554.890949 B =14362.557407 C =15061.819176 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.880 5.880 2 C 0.095 3.905 3 Si 0.857 3.143 4 H -0.267 1.267 5 H -0.274 1.274 6 H -0.235 1.235 7 C -0.522 4.522 8 H 0.088 0.912 9 S -0.142 6.142 10 C -0.125 4.125 11 C 0.531 3.469 12 O -0.519 6.519 13 N -0.737 5.737 14 C 0.124 3.876 15 C -0.151 4.151 16 C 0.114 3.886 17 N -0.582 5.582 18 C 0.528 3.472 19 O -0.532 6.532 20 C -0.145 4.145 21 C -0.119 4.119 22 C -0.140 4.140 23 C -0.120 4.120 24 C 0.067 3.933 25 C -0.196 4.196 26 C -0.187 4.187 27 H 0.271 0.729 28 H 0.097 0.903 29 H 0.097 0.903 30 H 0.400 0.600 31 H 0.068 0.932 32 H 0.067 0.933 33 H 0.075 0.925 34 H 0.076 0.924 35 H 0.087 0.913 36 H 0.088 0.912 37 H 0.112 0.888 38 H 0.086 0.914 39 H 0.077 0.923 40 H 0.085 0.915 41 H 0.073 0.927 42 H 0.071 0.929 43 H 0.095 0.905 44 H 0.128 0.872 45 H 0.143 0.857 46 H 0.087 0.913 47 H 0.096 0.904 48 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 21.531 -20.382 -2.281 29.736 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.516 5.516 2 C -0.114 4.114 3 Si 0.682 3.318 4 H -0.192 1.192 5 H -0.199 1.199 6 H -0.159 1.159 7 C -0.669 4.669 8 H 0.106 0.894 9 S 0.084 5.916 10 C -0.275 4.275 11 C 0.317 3.683 12 O -0.394 6.394 13 N -0.392 5.392 14 C -0.001 4.001 15 C -0.190 4.190 16 C -0.010 4.010 17 N -0.312 5.312 18 C 0.318 3.682 19 O -0.410 6.410 20 C -0.166 4.166 21 C -0.156 4.156 22 C -0.178 4.178 23 C -0.157 4.157 24 C -0.038 4.038 25 C -0.233 4.233 26 C -0.226 4.226 27 H 0.081 0.919 28 H 0.115 0.885 29 H 0.115 0.885 30 H 0.234 0.766 31 H 0.086 0.914 32 H 0.086 0.914 33 H 0.093 0.907 34 H 0.095 0.905 35 H 0.105 0.895 36 H 0.106 0.894 37 H 0.129 0.871 38 H 0.104 0.896 39 H 0.095 0.905 40 H 0.103 0.897 41 H 0.092 0.908 42 H 0.090 0.910 43 H 0.114 0.886 44 H 0.146 0.854 45 H 0.161 0.839 46 H 0.105 0.895 47 H 0.114 0.886 48 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges 22.804 -19.315 -2.275 29.971 hybrid contribution -1.268 -0.531 0.220 1.392 sum 21.536 -19.847 -2.054 29.358 Atomic orbital electron populations 1.69938 1.05916 1.27785 1.48006 1.24723 0.94464 0.98992 0.93184 0.86731 0.81884 0.83262 0.79935 1.19202 1.19939 1.15921 1.22312 0.88241 0.97537 1.58837 0.89383 1.84785 1.09324 1.00024 1.97432 1.23280 0.93991 1.04424 1.05822 1.20285 0.90615 0.82248 0.75191 1.90702 1.58787 1.42207 1.47685 1.45933 1.07334 1.08117 1.77798 1.21154 0.81941 0.94384 1.02600 1.22268 0.96838 0.95996 1.03936 1.21579 0.95494 0.79706 1.04197 1.47372 1.70369 1.08619 1.04863 1.20649 0.75437 0.87226 0.84928 1.90474 1.48024 1.15741 1.86715 1.22957 1.00700 1.01136 0.91818 1.22804 0.94492 1.02736 0.95611 1.22817 0.96271 1.02383 0.96317 1.22848 0.97452 1.01923 0.93524 1.21722 1.06517 0.88481 0.87036 1.24045 0.95393 0.97854 1.06018 1.23234 0.94831 1.01764 1.02727 0.91924 0.88489 0.88464 0.76629 0.91386 0.91423 0.90683 0.90483 0.89476 0.89433 0.87057 0.89563 0.90468 0.89672 0.90849 0.91043 0.88641 0.85430 0.83935 0.89470 0.88583 0.88803 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -26.33 13.97 55.49 0.78 -25.56 16 2 C 0.10 2.76 5.50 -17.43 -0.10 2.66 16 3 Si 0.86 21.54 27.74 -169.99 -4.71 16.83 16 4 H -0.27 -6.63 7.11 56.52 0.40 -6.23 16 5 H -0.27 -6.64 7.11 56.52 0.40 -6.24 16 6 H -0.24 -5.89 6.74 56.52 0.38 -5.51 16 7 C -0.52 -14.84 10.04 30.94 0.31 -14.53 16 8 H 0.09 2.61 8.03 -52.49 -0.42 2.19 16 9 S -0.14 -3.53 18.55 -107.50 -1.99 -5.52 16 10 C -0.12 -2.32 6.16 36.01 0.22 -2.09 16 11 C 0.53 8.86 7.85 -10.99 -0.09 8.78 16 12 O -0.52 -10.68 15.86 5.56 0.09 -10.59 16 13 N -0.74 -8.29 5.56 -60.30 -0.33 -8.62 16 14 C 0.12 1.09 5.67 -4.04 -0.02 1.07 16 15 C -0.15 -0.91 5.65 -26.73 -0.15 -1.06 16 16 C 0.11 0.61 5.24 -4.04 -0.02 0.59 16 17 N -0.58 -4.23 2.84 -166.10 -0.47 -4.70 16 18 C 0.53 4.61 6.86 -10.99 -0.08 4.53 16 19 O -0.53 -6.10 11.87 5.56 0.07 -6.03 16 20 C -0.15 -0.97 3.54 -90.96 -0.32 -1.29 16 21 C -0.12 -0.77 7.36 -25.92 -0.19 -0.96 16 22 C -0.14 -0.83 8.08 -25.92 -0.21 -1.04 16 23 C -0.12 -0.80 7.53 -25.91 -0.20 -0.99 16 24 C 0.07 0.49 6.62 -67.92 -0.45 0.04 16 25 C -0.20 -1.66 9.64 -26.69 -0.26 -1.92 16 26 C -0.19 -1.51 9.89 -26.69 -0.26 -1.77 16 27 H 0.27 7.53 8.31 -40.82 -0.34 7.19 16 28 H 0.10 1.67 8.14 -51.91 -0.42 1.25 16 29 H 0.10 1.68 8.14 -51.92 -0.42 1.26 16 30 H 0.40 3.46 8.47 -40.82 -0.35 3.11 16 31 H 0.07 0.65 8.14 -51.93 -0.42 0.22 16 32 H 0.07 0.63 8.14 -51.93 -0.42 0.20 16 33 H 0.07 0.45 7.52 -51.93 -0.39 0.06 16 34 H 0.08 0.48 8.14 -51.93 -0.42 0.06 16 35 H 0.09 0.38 8.03 -51.93 -0.42 -0.03 16 36 H 0.09 0.38 5.88 -51.93 -0.31 0.08 16 37 H 0.11 0.59 5.95 -51.93 -0.31 0.28 16 38 H 0.09 0.64 8.09 -51.92 -0.42 0.22 16 39 H 0.08 0.46 7.79 -51.93 -0.40 0.05 16 40 H 0.08 0.45 8.14 -51.93 -0.42 0.02 16 41 H 0.07 0.42 8.14 -51.93 -0.42 -0.01 16 42 H 0.07 0.41 8.14 -51.93 -0.42 -0.01 16 43 H 0.10 0.77 7.37 -51.93 -0.38 0.39 16 44 H 0.13 0.72 8.09 -51.93 -0.42 0.30 16 45 H 0.14 1.55 5.00 -53.14 -0.27 1.28 16 46 H 0.09 0.61 8.14 -51.93 -0.42 0.19 16 47 H 0.10 0.64 8.14 -51.93 -0.42 0.22 16 48 H 0.09 0.91 7.78 -51.93 -0.40 0.51 16 LS Contribution 400.73 15.07 6.04 6.04 Total: -1.00 -34.85 400.73 -10.23 -45.08 By element: Atomic # 1 Polarization: 8.94 SS G_CDS: -7.87 Total: 1.07 kcal Atomic # 6 Polarization: -6.17 SS G_CDS: -1.81 Total: -7.98 kcal Atomic # 7 Polarization: -38.85 SS G_CDS: -0.03 Total: -38.88 kcal Atomic # 8 Polarization: -16.78 SS G_CDS: 0.15 Total: -16.63 kcal Atomic # 14 Polarization: 21.54 SS G_CDS: -4.71 Total: 16.83 kcal Atomic # 16 Polarization: -3.53 SS G_CDS: -1.99 Total: -5.52 kcal Total LS contribution 6.04 Total: 6.04 kcal Total: -34.85 -10.23 -45.08 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000343373555.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.061 kcal (2) G-P(sol) polarization free energy of solvation -34.850 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.789 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.227 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.077 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.016 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds