Wall clock time and date at job start Sat Apr 11 2020 05:59:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31630 * 1 3 3 Si 1.86799 * 119.99954 * 2 1 4 4 H 1.48508 * 109.47121 * 269.99318 * 3 2 1 5 5 H 1.48500 * 109.47470 * 29.99535 * 3 2 1 6 6 H 1.48507 * 109.47463 * 149.99733 * 3 2 1 7 7 C 1.38804 * 120.00188 * 179.97438 * 2 1 3 8 8 H 1.07997 * 119.99853 * 0.02562 * 7 2 1 9 9 S 1.76201 * 120.00158 * 180.02562 * 7 2 1 10 10 C 1.80997 * 99.99880 * 179.97438 * 9 7 2 11 11 C 1.50703 * 109.47106 * 180.02562 * 10 9 7 12 12 O 1.21282 * 120.00007 * 359.97438 * 11 10 9 13 13 N 1.34771 * 120.00352 * 180.02562 * 11 10 9 14 14 C 1.46492 * 120.00564 * 180.02562 * 13 11 10 15 15 C 1.53002 * 109.47489 * 180.02562 * 14 13 11 16 16 C 1.53003 * 109.47021 * 179.97438 * 15 14 13 17 17 N 1.46499 * 109.46878 * 179.97438 * 16 15 14 18 18 C 1.34773 * 120.00200 * 90.00116 * 17 16 15 19 19 O 1.21281 * 120.00188 * 177.27898 * 18 17 16 20 20 C 1.50703 * 119.99981 * 357.27311 * 18 17 16 21 21 C 1.53778 * 113.61743 * 254.59413 * 20 18 17 22 22 C 1.53773 * 87.08384 * 220.01870 * 21 20 18 23 23 C 1.53785 * 87.08234 * 25.43363 * 22 21 20 24 24 C 1.46504 * 119.99663 * 270.00075 * 17 16 15 25 25 C 1.53006 * 117.49526 * 197.38640 * 24 17 16 26 26 C 1.53003 * 117.49873 * 128.72871 * 24 17 16 27 27 H 0.96998 * 119.99728 * 0.02562 * 1 2 3 28 28 H 1.09005 * 109.47002 * 60.00151 * 10 9 7 29 29 H 1.08994 * 109.47281 * 299.99840 * 10 9 7 30 30 H 0.97005 * 119.99752 * 0.02562 * 13 11 10 31 31 H 1.08996 * 109.47257 * 59.99673 * 14 13 11 32 32 H 1.09002 * 109.46704 * 300.00108 * 14 13 11 33 33 H 1.08996 * 109.47205 * 59.99559 * 15 14 13 34 34 H 1.08994 * 109.46869 * 299.99592 * 15 14 13 35 35 H 1.09001 * 109.46755 * 59.99726 * 16 15 14 36 36 H 1.09002 * 109.46986 * 299.99911 * 16 15 14 37 37 H 1.08998 * 112.84709 * 25.89893 * 20 18 17 38 38 H 1.09007 * 113.61685 * 334.56953 * 21 20 18 39 39 H 1.08999 * 113.61289 * 105.46886 * 21 20 18 40 40 H 1.08994 * 113.61732 * 270.88676 * 22 21 20 41 41 H 1.09002 * 113.61520 * 139.98081 * 22 21 20 42 42 H 1.09003 * 113.61538 * 220.02119 * 23 22 21 43 43 H 1.08998 * 113.69193 * 89.12388 * 23 22 21 44 44 H 1.08994 * 115.55053 * 343.04978 * 24 17 16 45 45 H 1.09004 * 117.50120 * 359.97438 * 25 24 17 46 46 H 1.08998 * 117.50069 * 145.01895 * 25 24 17 47 47 H 1.08997 * 117.49507 * 214.97673 * 26 24 17 48 48 H 1.09002 * 117.49824 * 359.97359 * 26 24 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 2.4979 2.0464 -1.4001 5 1 1.4477 2.6527 0.6999 6 1 3.5479 1.4403 0.7001 7 6 2.0104 -1.2021 0.0005 8 1 1.4704 -2.1373 0.0005 9 16 3.7724 -1.2020 0.0012 10 6 4.0866 -2.9845 0.0025 11 6 5.5731 -3.2325 0.0039 12 8 6.3441 -2.2963 0.0035 13 7 6.0458 -4.4946 0.0045 14 6 7.4907 -4.7358 0.0064 15 6 7.7564 -6.2425 0.0061 16 6 9.2656 -6.4943 0.0075 17 7 9.5200 -7.9370 0.0078 18 6 9.6381 -8.6007 -1.1592 19 8 9.8976 -9.7855 -1.1595 20 6 9.4475 -7.8708 -2.4638 21 6 8.1083 -8.1807 -3.1532 22 6 8.8839 -8.1911 -4.4809 23 6 10.1312 -8.5562 -3.6587 24 6 9.6461 -8.6582 1.2768 25 6 10.3016 -10.0403 1.2417 26 6 8.7922 -9.9141 1.4634 27 1 -0.4849 0.8400 -0.0004 28 1 3.6440 -3.4321 -0.8874 29 1 3.6434 -3.4310 0.8926 30 1 5.4291 -5.2435 0.0037 31 1 7.9325 -4.2887 0.8969 32 1 7.9348 -4.2887 -0.8830 33 1 7.3147 -6.6892 -0.8846 34 1 7.3123 -6.6899 0.8953 35 1 9.7076 -6.0475 0.8981 36 1 9.7094 -6.0469 -0.8819 37 1 9.6650 -6.8055 -2.3884 38 1 7.6922 -9.1513 -2.8829 39 1 7.3814 -7.3719 -3.0785 40 1 8.9464 -7.2130 -4.9578 41 1 8.5668 -8.9776 -5.1657 42 1 11.0374 -8.0506 -3.9922 43 1 10.2696 -9.6292 -3.5260 44 1 9.8270 -8.0376 2.1543 45 1 10.6387 -10.4131 0.2744 46 1 10.9134 -10.3290 2.0963 47 1 8.4117 -10.1197 2.4639 48 1 8.1364 -10.2034 0.6423 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000343373555.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:59:44 Heat of formation + Delta-G solvation = -41.167376 kcal Electronic energy + Delta-G solvation = -26777.399708 eV Core-core repulsion = 22959.572074 eV Total energy + Delta-G solvation = -3817.827634 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 340.161 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -41.82244 -40.59120 -39.11386 -37.50936 -36.65572 -35.28349 -34.65935 -32.45750 -30.43970 -27.98056 -27.85210 -26.61087 -26.22105 -23.86181 -23.32469 -22.80836 -21.79040 -20.94497 -19.87988 -19.71835 -18.37034 -17.79756 -17.50616 -17.16803 -16.91291 -16.76540 -16.41611 -16.10715 -15.83644 -15.66300 -15.59201 -15.02081 -14.89324 -14.61927 -14.06333 -13.98867 -13.83469 -13.69169 -13.42306 -13.32800 -13.19850 -12.99462 -12.95066 -12.67880 -12.51372 -12.47708 -12.09490 -11.93759 -11.87659 -11.84867 -11.39090 -11.30418 -11.20687 -11.15914 -10.99467 -10.51963 -10.25244 -10.08463 -9.47524 -8.97725 -8.50430 -6.20967 1.01280 1.32762 1.44909 1.48705 1.58036 1.60619 1.83893 2.25415 2.32493 2.73708 2.87856 2.97245 3.40500 3.62299 3.66974 3.77966 3.87051 3.90380 3.95979 4.01524 4.07750 4.09354 4.21576 4.25145 4.26150 4.41163 4.50268 4.55546 4.66200 4.70502 4.76482 4.80999 4.83658 4.84522 4.97666 5.05210 5.06924 5.08305 5.16018 5.23751 5.33720 5.46914 5.50431 5.71717 5.74953 6.12679 6.34808 6.49870 6.94788 7.17328 7.23066 8.61893 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.018003 B = 0.001949 C = 0.001859 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1554.890949 B =14362.557407 C =15061.819176 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.918 5.918 2 C 0.043 3.957 3 Si 0.915 3.085 4 H -0.262 1.262 5 H -0.261 1.261 6 H -0.235 1.235 7 C -0.529 4.529 8 H 0.062 0.938 9 S -0.175 6.175 10 C -0.113 4.113 11 C 0.536 3.464 12 O -0.562 6.562 13 N -0.713 5.713 14 C 0.124 3.876 15 C -0.137 4.137 16 C 0.111 3.889 17 N -0.580 5.580 18 C 0.520 3.480 19 O -0.566 6.566 20 C -0.141 4.141 21 C -0.118 4.118 22 C -0.135 4.135 23 C -0.123 4.123 24 C 0.072 3.928 25 C -0.207 4.207 26 C -0.189 4.189 27 H 0.277 0.723 28 H 0.113 0.887 29 H 0.112 0.888 30 H 0.415 0.585 31 H 0.066 0.934 32 H 0.069 0.931 33 H 0.078 0.922 34 H 0.079 0.921 35 H 0.103 0.897 36 H 0.102 0.898 37 H 0.132 0.868 38 H 0.070 0.930 39 H 0.087 0.913 40 H 0.098 0.902 41 H 0.072 0.928 42 H 0.081 0.919 43 H 0.074 0.926 44 H 0.153 0.847 45 H 0.118 0.882 46 H 0.100 0.900 47 H 0.111 0.889 48 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 22.967 -19.984 -2.005 30.510 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.556 5.556 2 C -0.162 4.162 3 Si 0.737 3.263 4 H -0.187 1.187 5 H -0.185 1.185 6 H -0.159 1.159 7 C -0.676 4.676 8 H 0.080 0.920 9 S 0.051 5.949 10 C -0.264 4.264 11 C 0.321 3.679 12 O -0.440 6.440 13 N -0.367 5.367 14 C 0.000 4.000 15 C -0.176 4.176 16 C -0.011 4.011 17 N -0.309 5.309 18 C 0.310 3.690 19 O -0.446 6.446 20 C -0.162 4.162 21 C -0.156 4.156 22 C -0.172 4.172 23 C -0.161 4.161 24 C -0.033 4.033 25 C -0.245 4.245 26 C -0.227 4.227 27 H 0.086 0.914 28 H 0.131 0.869 29 H 0.130 0.870 30 H 0.252 0.748 31 H 0.085 0.915 32 H 0.087 0.913 33 H 0.096 0.904 34 H 0.098 0.902 35 H 0.122 0.878 36 H 0.120 0.880 37 H 0.150 0.850 38 H 0.088 0.912 39 H 0.106 0.894 40 H 0.116 0.884 41 H 0.091 0.909 42 H 0.099 0.901 43 H 0.093 0.907 44 H 0.171 0.829 45 H 0.135 0.865 46 H 0.119 0.881 47 H 0.130 0.870 48 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges 24.234 -18.962 -1.994 30.836 hybrid contribution -1.681 -0.870 0.132 1.898 sum 22.553 -19.833 -1.862 30.091 Atomic orbital electron populations 1.70020 1.07348 1.29006 1.49202 1.25597 0.95294 1.02356 0.92943 0.85850 0.80698 0.79495 0.80222 1.18672 1.18513 1.15901 1.22473 0.90383 0.96627 1.58149 0.92020 1.84683 1.06250 1.06352 1.97581 1.23288 0.96284 0.99477 1.07373 1.19876 0.89209 0.83481 0.75356 1.90694 1.59223 1.43842 1.50262 1.45733 1.09032 1.06628 1.75258 1.21312 0.79831 0.96214 1.02657 1.22126 0.97426 0.93750 1.04260 1.21729 0.95082 0.78503 1.05829 1.47451 1.69563 1.09368 1.04474 1.21069 0.74946 0.86984 0.85960 1.90486 1.49528 1.17330 1.87284 1.23035 1.00675 1.01903 0.90577 1.22773 0.94633 1.02259 0.95930 1.22825 0.95392 1.03006 0.96023 1.22818 0.98382 1.00829 0.94107 1.21970 1.05060 0.88409 0.87818 1.23940 0.95889 0.99347 1.05276 1.23192 0.94187 1.02651 1.02692 0.91408 0.86921 0.86991 0.74796 0.91525 0.91263 0.90366 0.90242 0.87830 0.88035 0.84986 0.91156 0.89429 0.88371 0.90945 0.90050 0.90743 0.82927 0.86472 0.88123 0.87045 0.90969 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -55.39 13.97 21.65 0.30 -55.08 16 2 C 0.04 2.52 5.50 84.86 0.47 2.98 16 3 Si 0.92 44.30 27.74 68.60 1.90 46.21 16 4 H -0.26 -12.36 7.11 99.48 0.71 -11.65 16 5 H -0.26 -11.88 7.11 99.48 0.71 -11.17 16 6 H -0.24 -11.30 6.74 99.48 0.67 -10.63 16 7 C -0.53 -30.26 10.04 67.96 0.68 -29.58 16 8 H 0.06 3.73 8.03 -2.91 -0.02 3.70 16 9 S -0.18 -8.59 18.55 -56.49 -1.05 -9.63 16 10 C -0.11 -4.01 6.16 71.24 0.44 -3.57 16 11 C 0.54 16.64 7.85 87.66 0.69 17.33 16 12 O -0.56 -22.15 15.86 -3.04 -0.05 -22.20 16 13 N -0.71 -13.74 5.56 -463.08 -2.57 -16.31 16 14 C 0.12 1.76 5.67 86.38 0.49 2.25 16 15 C -0.14 -1.16 5.65 30.60 0.17 -0.98 16 16 C 0.11 0.81 5.24 86.38 0.45 1.26 16 17 N -0.58 -7.21 2.84 -797.81 -2.27 -9.48 16 18 C 0.52 8.61 6.86 87.66 0.60 9.21 16 19 O -0.57 -13.36 11.87 -3.03 -0.04 -13.40 16 20 C -0.14 -1.65 3.54 -11.01 -0.04 -1.69 16 21 C -0.12 -1.36 7.36 31.12 0.23 -1.13 16 22 C -0.14 -1.40 8.08 31.12 0.25 -1.15 16 23 C -0.12 -1.55 7.53 31.12 0.23 -1.32 16 24 C 0.07 0.92 6.62 44.99 0.30 1.22 16 25 C -0.21 -3.41 9.64 30.62 0.30 -3.12 16 26 C -0.19 -2.88 9.89 30.62 0.30 -2.57 16 27 H 0.28 15.43 8.31 -92.71 -0.77 14.66 16 28 H 0.11 3.65 8.14 -2.39 -0.02 3.63 16 29 H 0.11 3.65 8.14 -2.40 -0.02 3.63 16 30 H 0.42 5.66 8.47 -92.70 -0.79 4.87 16 31 H 0.07 1.04 8.14 -2.39 -0.02 1.02 16 32 H 0.07 1.04 8.14 -2.39 -0.02 1.02 16 33 H 0.08 0.67 7.52 -2.39 -0.02 0.65 16 34 H 0.08 0.70 8.14 -2.39 -0.02 0.68 16 35 H 0.10 0.49 8.03 -2.39 -0.02 0.47 16 36 H 0.10 0.49 5.88 -2.39 -0.01 0.48 16 37 H 0.13 0.97 5.95 -2.39 -0.01 0.96 16 38 H 0.07 1.04 8.09 -2.38 -0.02 1.02 16 39 H 0.09 0.82 7.79 -2.39 -0.02 0.81 16 40 H 0.10 0.79 8.14 -2.39 -0.02 0.77 16 41 H 0.07 0.76 8.14 -2.39 -0.02 0.74 16 42 H 0.08 0.84 8.14 -2.39 -0.02 0.82 16 43 H 0.07 1.26 7.37 -2.39 -0.02 1.24 16 44 H 0.15 1.19 8.09 -2.39 -0.02 1.17 16 45 H 0.12 2.65 5.00 -21.64 -0.11 2.54 16 46 H 0.10 1.32 8.14 -2.39 -0.02 1.30 16 47 H 0.11 1.32 8.14 -2.39 -0.02 1.30 16 48 H 0.07 1.42 7.78 -2.39 -0.02 1.40 16 Total: -1.00 -77.16 400.73 1.84 -75.32 By element: Atomic # 1 Polarization: 15.40 SS G_CDS: 0.04 Total: 15.44 kcal Atomic # 6 Polarization: -16.43 SS G_CDS: 5.56 Total: -10.86 kcal Atomic # 7 Polarization: -76.33 SS G_CDS: -4.54 Total: -80.87 kcal Atomic # 8 Polarization: -35.51 SS G_CDS: -0.08 Total: -35.60 kcal Atomic # 14 Polarization: 44.30 SS G_CDS: 1.90 Total: 46.21 kcal Atomic # 16 Polarization: -8.59 SS G_CDS: -1.05 Total: -9.63 kcal Total: -77.16 1.84 -75.32 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000343373555.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.148 kcal (2) G-P(sol) polarization free energy of solvation -77.157 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.010 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.842 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.315 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.167 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds