Wall clock time and date at job start Sat Apr 11 2020 05:59:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 O 1.45204 * 109.47756 * 2 1 4 4 C 1.34228 * 117.00308 * 180.02562 * 3 2 1 5 5 O 1.20824 * 120.00132 * 359.97438 * 4 3 2 6 6 C 1.50697 * 119.99732 * 180.02562 * 4 3 2 7 7 C 1.52998 * 109.47410 * 85.00154 * 6 4 3 8 8 O 1.42897 * 109.47039 * 324.99521 * 6 4 3 9 9 C 1.53001 * 109.46777 * 204.99991 * 6 4 3 10 10 N 1.46500 * 109.47049 * 185.00243 * 9 6 4 11 11 C 1.34779 * 119.99738 * 179.97438 * 10 9 6 12 12 O 1.21589 * 120.00349 * 359.97438 * 11 10 9 13 13 N 1.34787 * 119.99663 * 179.97438 * 11 10 9 14 14 C 1.40196 * 119.99563 * 179.97438 * 13 11 10 15 15 C 1.40395 * 125.97533 * 359.97438 * 14 13 11 16 16 C 1.35243 * 107.86535 * 179.71691 * 15 14 13 17 17 N 1.34960 * 107.86064 * 0.42509 * 16 15 14 18 18 C 1.46500 * 125.97985 * 179.83521 * 17 16 15 19 19 C 1.50706 * 109.47299 * 124.71356 * 18 17 16 20 20 H 1.07998 * 119.99503 * 0.02562 * 19 18 17 21 21 C 1.37871 * 120.00434 * 180.02562 * 19 18 17 22 22 N 1.31516 * 119.99826 * 359.72891 * 21 19 18 23 23 Si 1.86800 * 120.00406 * 180.02562 * 21 19 18 24 24 H 1.48501 * 109.47364 * 179.72558 * 23 21 19 25 25 H 1.48508 * 109.46883 * 299.72681 * 23 21 19 26 26 H 1.48497 * 109.46870 * 59.72491 * 23 21 19 27 27 N 1.31213 * 125.96849 * 179.97438 * 14 13 11 28 28 H 1.09003 * 109.46968 * 59.99612 * 1 2 3 29 29 H 1.08994 * 109.47406 * 180.02562 * 1 2 3 30 30 H 1.09003 * 109.46440 * 299.99868 * 1 2 3 31 31 H 1.09004 * 109.47123 * 239.99832 * 2 1 3 32 32 H 1.09004 * 109.47441 * 120.00152 * 2 1 3 33 33 H 1.08998 * 109.47295 * 180.02562 * 7 6 4 34 34 H 1.09008 * 109.46590 * 299.99507 * 7 6 4 35 35 H 1.08998 * 109.47500 * 59.99273 * 7 6 4 36 36 H 0.96698 * 114.00295 * 300.00140 * 8 6 4 37 37 H 1.08994 * 109.47616 * 64.99542 * 9 6 4 38 38 H 1.09001 * 109.47145 * 304.99828 * 9 6 4 39 39 H 0.96998 * 120.00159 * 359.97438 * 10 9 6 40 40 H 0.96998 * 119.99666 * 359.97438 * 13 11 10 41 41 H 1.08003 * 126.06887 * 0.02562 * 15 14 13 42 42 H 1.08007 * 126.06985 * 180.26350 * 16 15 14 43 43 H 1.09004 * 109.47078 * 4.72118 * 18 17 16 44 44 H 1.08993 * 109.47364 * 244.71890 * 18 17 16 45 45 H 0.97000 * 120.00236 * 0.27947 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 8 2.0141 1.3689 0.0000 4 6 3.3448 1.5447 -0.0005 5 8 4.0808 0.5865 -0.0005 6 6 3.9208 2.9373 0.0000 7 6 4.0003 3.4558 1.4373 8 8 3.0828 3.7997 -0.7719 9 6 5.3236 2.9091 -0.6103 10 7 5.9302 4.2381 -0.5014 11 6 7.1736 4.4522 -0.9754 12 8 7.7920 3.5421 -1.4930 13 7 7.7316 5.6751 -0.8757 14 6 9.0252 5.8975 -1.3683 15 6 9.8485 4.9421 -1.9851 16 6 11.0091 5.5495 -2.3214 17 7 10.9318 6.8376 -1.9258 18 6 11.9746 7.8530 -2.0922 19 6 11.4072 9.0400 -2.8272 20 1 10.3732 9.0383 -3.1388 21 6 12.2082 10.1281 -3.1019 22 7 13.4660 10.1324 -2.7178 23 14 11.5047 11.5998 -4.0123 24 1 12.5602 12.6315 -4.1758 25 1 11.0213 11.1699 -5.3491 26 1 10.3734 12.1676 -3.2358 27 7 9.6781 7.0352 -1.3334 28 1 -0.3633 0.5139 -0.8900 29 1 -0.3634 -1.0276 0.0005 30 1 -0.3632 0.5138 0.8901 31 1 1.8933 -0.5139 -0.8900 32 1 1.8933 -0.5139 0.8900 33 1 4.4165 4.4632 1.4376 34 1 3.0009 3.4759 1.8720 35 1 4.6395 2.7979 2.0261 36 1 2.9866 3.5310 -1.6958 37 1 5.2573 2.6248 -1.6604 38 1 5.9379 2.1845 -0.0759 39 1 5.4371 4.9640 -0.0882 40 1 7.2381 6.4011 -0.4632 41 1 9.5974 3.9070 -2.1642 42 1 11.8496 5.0855 -2.8160 43 1 12.8024 7.4334 -2.6640 44 1 12.3332 8.1695 -1.1128 45 1 13.8313 9.3684 -2.2448 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000360044396.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:59:46 Heat of formation + Delta-G solvation = -105.297998 kcal Electronic energy + Delta-G solvation = -28760.903486 eV Core-core repulsion = 24394.001726 eV Total energy + Delta-G solvation = -4366.901760 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 340.163 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -42.35596 -42.03003 -40.96166 -38.97588 -37.79385 -36.46367 -35.64384 -35.47771 -32.98009 -32.65027 -32.00631 -30.99944 -28.47096 -27.72070 -25.92621 -25.02654 -23.66919 -22.94840 -22.14077 -21.69135 -21.28598 -19.72738 -19.46504 -19.20414 -18.30677 -18.07214 -17.82715 -17.10966 -16.90465 -16.52519 -16.27585 -15.81780 -15.78051 -15.57669 -15.43908 -15.05509 -14.90881 -14.83067 -14.23026 -13.92602 -13.75416 -13.68329 -13.66039 -13.55002 -13.30295 -13.20882 -12.99398 -12.94219 -12.59929 -12.50971 -12.02770 -11.98476 -11.94299 -11.70573 -11.58771 -11.26304 -11.17120 -10.99743 -10.68096 -10.36589 -9.80685 -9.15005 -8.75623 -6.54406 0.81520 0.90648 1.00582 1.44051 1.52346 1.58845 1.62545 1.80361 2.05171 2.33525 2.50067 2.88601 3.02564 3.07470 3.18731 3.44983 3.61114 3.87234 3.97781 4.03506 4.15292 4.31654 4.38650 4.47906 4.58036 4.60849 4.67150 4.73114 4.78998 4.80345 4.86677 4.90811 4.99839 5.07360 5.10732 5.26874 5.35280 5.55670 5.75619 5.85167 5.95867 6.28545 6.29392 6.42997 6.58277 6.64719 7.06009 7.21522 7.33912 8.59834 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.027707 B = 0.001754 C = 0.001694 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1010.337404 B =15958.167867 C =16525.954056 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.049 3.951 3 O -0.345 6.345 4 C 0.446 3.554 5 O -0.523 6.523 6 C 0.154 3.846 7 C -0.146 4.146 8 O -0.532 6.532 9 C 0.128 3.872 10 N -0.712 5.712 11 C 0.715 3.285 12 O -0.599 6.599 13 N -0.633 5.633 14 C 0.288 3.712 15 C -0.290 4.290 16 C 0.055 3.945 17 N -0.344 5.344 18 C 0.260 3.740 19 C -0.622 4.622 20 H 0.046 0.954 21 C -0.019 4.019 22 N -0.923 5.923 23 Si 1.120 2.880 24 H -0.276 1.276 25 H -0.272 1.272 26 H -0.275 1.275 27 N -0.346 5.346 28 H 0.069 0.931 29 H 0.098 0.902 30 H 0.069 0.931 31 H 0.070 0.930 32 H 0.071 0.929 33 H 0.097 0.903 34 H 0.087 0.913 35 H 0.085 0.915 36 H 0.400 0.600 37 H 0.076 0.924 38 H 0.081 0.919 39 H 0.417 0.583 40 H 0.423 0.577 41 H 0.168 0.832 42 H 0.201 0.799 43 H 0.054 0.946 44 H 0.017 0.983 45 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -27.374 -18.544 7.190 33.837 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.024 4.024 3 O -0.261 6.261 4 C 0.288 3.712 5 O -0.412 6.412 6 C 0.110 3.890 7 C -0.203 4.203 8 O -0.341 6.341 9 C 0.003 3.997 10 N -0.370 5.370 11 C 0.415 3.585 12 O -0.477 6.477 13 N -0.285 5.285 14 C 0.032 3.968 15 C -0.322 4.322 16 C -0.093 4.093 17 N -0.126 5.126 18 C 0.140 3.860 19 C -0.660 4.660 20 H 0.064 0.936 21 C -0.218 4.218 22 N -0.560 5.560 23 Si 0.941 3.059 24 H -0.200 1.200 25 H -0.197 1.197 26 H -0.200 1.200 27 N -0.176 5.176 28 H 0.088 0.912 29 H 0.117 0.883 30 H 0.088 0.912 31 H 0.089 0.911 32 H 0.089 0.911 33 H 0.116 0.884 34 H 0.106 0.894 35 H 0.104 0.896 36 H 0.251 0.749 37 H 0.094 0.906 38 H 0.099 0.901 39 H 0.256 0.744 40 H 0.260 0.740 41 H 0.186 0.814 42 H 0.218 0.782 43 H 0.071 0.929 44 H 0.035 0.965 45 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -26.294 -16.610 7.057 31.891 hybrid contribution -0.270 -2.327 0.268 2.358 sum -26.564 -18.937 7.325 33.435 Atomic orbital electron populations 1.21823 0.90423 1.04344 1.03812 1.23373 0.97136 0.79070 1.02795 1.86578 1.23056 1.33710 1.82763 1.24619 0.81489 0.92928 0.72204 1.90735 1.61090 1.43797 1.45558 1.21080 0.87908 0.83272 0.96720 1.21920 1.05146 1.03761 0.89502 1.86635 1.68650 1.51325 1.27441 1.21601 0.92070 0.83914 1.02158 1.44547 1.14027 1.13658 1.64803 1.15649 0.81999 0.81606 0.79269 1.90864 1.63157 1.43403 1.50268 1.41294 1.12660 1.12283 1.62248 1.19055 0.87053 0.92469 0.98240 1.21706 0.94392 1.02350 1.13710 1.23159 1.01205 0.84665 1.00231 1.48543 1.11347 1.08790 1.43903 1.19416 0.84002 0.86048 0.96511 1.22302 0.99333 1.03575 1.40789 0.93573 1.27276 0.94229 1.03549 0.96791 1.70947 1.14562 1.33112 1.37334 0.82874 0.75126 0.72286 0.75609 1.20046 1.19684 1.20006 1.77263 0.94628 1.20597 1.25160 0.91208 0.88317 0.91235 0.91123 0.91096 0.88442 0.89364 0.89627 0.74908 0.90589 0.90066 0.74388 0.73969 0.81431 0.78248 0.92871 0.96540 0.92988 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.82 10.29 71.98 0.74 -0.08 16 2 C 0.05 0.52 6.19 71.98 0.45 0.97 16 3 O -0.35 -4.79 9.97 -46.45 -0.46 -5.25 16 4 C 0.45 7.02 6.80 71.24 0.48 7.51 16 5 O -0.52 -11.39 15.74 21.97 0.35 -11.04 16 6 C 0.15 1.87 1.02 -11.54 -0.01 1.86 16 7 C -0.15 -1.35 8.60 71.98 0.62 -0.74 16 8 O -0.53 -5.43 12.72 -135.70 -1.73 -7.15 16 9 C 0.13 2.12 4.45 86.38 0.38 2.50 16 10 N -0.71 -12.31 5.19 -478.52 -2.49 -14.80 16 11 C 0.72 19.66 8.53 179.05 1.53 21.19 16 12 O -0.60 -21.04 13.47 -4.00 -0.05 -21.10 16 13 N -0.63 -18.65 5.46 -321.22 -1.75 -20.40 16 14 C 0.29 11.48 8.11 133.31 1.08 12.56 16 15 C -0.29 -11.50 9.61 22.10 0.21 -11.29 16 16 C 0.06 2.21 11.44 83.52 0.96 3.17 16 17 N -0.34 -16.27 3.67 -351.84 -1.29 -17.56 16 18 C 0.26 13.42 5.57 85.64 0.48 13.90 16 19 C -0.62 -35.48 9.24 25.60 0.24 -35.25 16 20 H 0.05 2.75 7.81 -2.91 -0.02 2.72 16 21 C -0.02 -1.05 5.46 84.65 0.46 -0.59 16 22 N -0.92 -54.08 13.65 21.45 0.29 -53.78 16 23 Si 1.12 49.65 29.90 68.60 2.05 51.70 16 24 H -0.28 -11.93 7.11 99.48 0.71 -11.22 16 25 H -0.27 -11.31 7.11 99.48 0.71 -10.61 16 26 H -0.27 -11.60 7.11 99.48 0.71 -10.90 16 27 N -0.35 -16.13 12.42 -54.44 -0.68 -16.80 16 28 H 0.07 0.39 8.14 -2.39 -0.02 0.37 16 29 H 0.10 0.21 8.14 -2.39 -0.02 0.19 16 30 H 0.07 0.39 8.14 -2.39 -0.02 0.37 16 31 H 0.07 0.76 8.13 -2.38 -0.02 0.74 16 32 H 0.07 0.76 8.13 -2.39 -0.02 0.74 16 33 H 0.10 0.67 6.58 -2.39 -0.02 0.65 16 34 H 0.09 0.72 8.14 -2.38 -0.02 0.70 16 35 H 0.08 0.80 8.14 -2.39 -0.02 0.78 16 36 H 0.40 2.04 9.04 -74.06 -0.67 1.37 16 37 H 0.08 1.35 8.14 -2.39 -0.02 1.33 16 38 H 0.08 1.65 7.69 -2.39 -0.02 1.63 16 39 H 0.42 4.80 7.00 -92.71 -0.65 4.15 16 40 H 0.42 9.70 8.84 -92.71 -0.82 8.88 16 41 H 0.17 6.49 5.91 -2.91 -0.02 6.47 16 42 H 0.20 6.29 8.06 -2.91 -0.02 6.27 16 43 H 0.05 2.64 7.94 -2.39 -0.02 2.62 16 44 H 0.02 0.91 8.00 -2.39 -0.02 0.89 16 45 H 0.26 15.10 7.22 -92.71 -0.67 14.43 16 Total: -1.00 -78.77 388.01 0.88 -77.89 By element: Atomic # 1 Polarization: 23.56 SS G_CDS: -0.98 Total: 22.58 kcal Atomic # 6 Polarization: 8.10 SS G_CDS: 7.61 Total: 15.71 kcal Atomic # 7 Polarization: -117.43 SS G_CDS: -5.91 Total: -123.34 kcal Atomic # 8 Polarization: -42.64 SS G_CDS: -1.90 Total: -44.54 kcal Atomic # 14 Polarization: 49.65 SS G_CDS: 2.05 Total: 51.70 kcal Total: -78.77 0.88 -77.89 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000360044396.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -27.404 kcal (2) G-P(sol) polarization free energy of solvation -78.774 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -106.177 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.879 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.894 kcal (6) G-S(sol) free energy of system = (1) + (5) -105.298 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds