Wall clock time and date at job start Sat Apr 11 2020 05:59:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86805 * 120.00092 * 2 1 4 4 H 1.48504 * 109.46940 * 269.99991 * 3 2 1 5 5 H 1.48501 * 109.47025 * 29.99920 * 3 2 1 6 6 H 1.48487 * 109.47101 * 149.99839 * 3 2 1 7 7 C 1.37878 * 119.99789 * 179.97438 * 2 1 3 8 8 H 1.07994 * 120.00273 * 0.02562 * 7 2 1 9 9 C 1.50694 * 119.99501 * 180.27618 * 7 2 1 10 10 N 1.46503 * 109.46877 * 179.72650 * 9 7 2 11 11 C 1.35615 * 124.77989 * 264.69548 * 10 9 7 12 12 C 1.36659 * 109.69850 * 179.88436 * 11 10 9 13 13 C 1.46378 * 126.78858 * 180.14246 * 12 11 10 14 14 C 1.35451 * 119.99909 * 312.76188 * 13 12 11 15 15 C 1.41494 * 120.00097 * 348.51222 * 14 13 12 16 16 O 1.21784 * 119.99724 * 353.36586 * 15 14 13 17 17 N 1.34775 * 119.99873 * 173.36513 * 15 14 13 18 18 C 1.47426 * 125.65013 * 359.69074 * 17 15 14 19 19 C 1.55127 * 104.72148 * 155.81748 * 18 17 15 20 20 C 1.55156 * 101.48918 * 37.29197 * 19 18 17 21 21 H 1.09007 * 110.71408 * 82.69411 * 20 19 18 22 22 O 1.42899 * 110.87569 * 205.89824 * 20 19 18 23 23 C 1.47029 * 125.64602 * 179.97438 * 17 15 14 24 24 C 1.47521 * 106.42458 * 0.36390 * 12 11 10 25 25 C 1.39251 * 133.96196 * 179.80221 * 24 12 11 26 26 C 1.37773 * 119.67352 * 179.97438 * 25 24 12 27 27 C 1.38742 * 120.29744 * 359.97438 * 26 25 24 28 28 C 1.37774 * 120.62876 * 0.02562 * 27 26 25 29 29 C 1.37989 * 124.78312 * 84.99819 * 10 9 7 30 30 H 0.97000 * 120.00134 * 0.02562 * 1 2 3 31 31 H 1.09003 * 109.47485 * 299.72246 * 9 7 2 32 32 H 1.08995 * 109.47807 * 59.72521 * 9 7 2 33 33 H 1.08000 * 125.14677 * 0.02562 * 11 10 9 34 34 H 1.08003 * 119.99849 * 132.75515 * 13 12 11 35 35 H 1.08000 * 119.99654 * 168.50656 * 14 13 12 36 36 H 1.08995 * 110.36460 * 274.74446 * 18 17 15 37 37 H 1.08994 * 110.36517 * 37.06970 * 18 17 15 38 38 H 1.09005 * 111.19142 * 279.18870 * 19 18 17 39 39 H 1.08994 * 110.94283 * 155.29307 * 19 18 17 40 40 H 0.96706 * 113.99854 * 175.06643 * 22 20 19 41 41 H 1.09004 * 109.87937 * 300.43943 * 23 17 15 42 42 H 1.08996 * 109.87933 * 61.60450 * 23 17 15 43 43 H 1.07995 * 120.16291 * 359.95290 * 25 24 12 44 44 H 1.08011 * 119.84965 * 180.02562 * 26 25 24 45 45 H 1.08007 * 119.68447 * 179.97438 * 27 26 25 46 46 H 1.08003 * 120.03028 * 180.02562 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 2.4967 2.0464 -1.4001 5 1 1.4466 2.6527 0.7000 6 1 3.5466 1.4402 0.7000 7 6 2.0045 -1.1941 0.0005 8 1 1.4645 -2.1293 0.0005 9 6 3.5114 -1.1940 0.0068 10 7 3.9998 -2.5752 0.0127 11 6 4.3501 -3.2671 1.1253 12 6 4.7580 -4.5240 0.7767 13 6 5.2132 -5.5804 1.6819 14 6 6.1218 -5.3006 2.6466 15 6 6.8111 -4.0650 2.6324 16 8 6.6787 -3.3047 1.6903 17 7 7.6141 -3.7294 3.6615 18 6 7.8594 -4.5485 4.8625 19 6 9.2395 -4.0738 5.3883 20 6 9.1724 -2.5505 5.1011 21 1 8.6350 -2.0318 5.8951 22 8 10.4830 -2.0045 4.9398 23 6 8.3861 -2.4833 3.7749 24 6 4.6539 -4.6038 -0.6927 25 6 4.9216 -5.6000 -1.6280 26 6 4.7130 -5.3522 -2.9671 27 6 4.2379 -4.1173 -3.3847 28 6 3.9689 -3.1229 -2.4699 29 6 4.1737 -3.3535 -1.1134 30 1 -0.4850 0.8400 -0.0004 31 1 3.8785 -0.6827 -0.8831 32 1 3.8711 -0.6777 0.8968 33 1 4.3103 -2.8837 2.1341 34 1 4.8245 -6.5830 1.5805 35 1 6.3201 -6.0206 3.4268 36 1 7.0848 -4.3696 5.6082 37 1 7.8972 -5.6055 4.5995 38 1 10.0540 -4.5403 4.8340 39 1 9.3365 -4.2661 6.4567 40 1 10.4919 -1.0719 4.6843 41 1 9.0785 -2.3986 2.9372 42 1 7.7101 -1.6284 3.7877 43 1 5.2914 -6.5621 -1.3054 44 1 4.9193 -6.1230 -3.6951 45 1 4.0783 -3.9336 -4.4370 46 1 3.5990 -2.1653 -2.8056 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000492074250.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:59:56 Heat of formation + Delta-G solvation = 13.734019 kcal Electronic energy + Delta-G solvation = -29102.597182 eV Core-core repulsion = 25151.706300 eV Total energy + Delta-G solvation = -3950.890882 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.157 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -40.77321 -40.05302 -38.16200 -36.45388 -35.74857 -34.04183 -32.88637 -31.40180 -30.72661 -29.76631 -28.92492 -28.19988 -26.84806 -24.51522 -23.04014 -22.50835 -21.68925 -21.23632 -20.60016 -19.56788 -18.23602 -17.82416 -17.21244 -17.14406 -16.33310 -16.02990 -15.71057 -14.98181 -14.87234 -14.57839 -14.47977 -14.12824 -13.82698 -13.60029 -13.36559 -13.33614 -13.11426 -12.92797 -12.66065 -12.56442 -12.32840 -12.09132 -11.99931 -11.94843 -11.76948 -11.42615 -11.19388 -11.04955 -10.86418 -10.69881 -10.48757 -10.40347 -10.14569 -9.80268 -9.46888 -9.31859 -8.82933 -8.67001 -8.56614 -7.44692 -6.63825 -6.30847 -4.34762 1.20346 1.85606 2.29890 2.99021 3.11589 3.19029 3.20376 3.44411 3.66797 3.78029 3.84685 4.17857 4.18957 4.24375 4.54138 4.69883 4.93141 4.98104 5.05445 5.10523 5.18864 5.28168 5.33032 5.43974 5.46095 5.54417 5.55894 5.57143 5.66116 5.75745 5.79831 5.98072 6.08578 6.16111 6.30356 6.37535 6.42656 6.47030 6.48195 6.65880 6.76403 7.05774 7.14051 7.22133 7.25522 7.38866 7.48836 7.59065 7.97173 7.99956 8.29958 8.47509 8.74117 9.25205 10.81363 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.008958 B = 0.003703 C = 0.002895 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3125.023867 B = 7559.628562 C = 9670.308748 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.885 5.885 2 C 0.080 3.920 3 Si 0.872 3.128 4 H -0.271 1.271 5 H -0.280 1.280 6 H -0.265 1.265 7 C -0.546 4.546 8 H 0.082 0.918 9 C 0.206 3.794 10 N -0.436 5.436 11 C 0.168 3.832 12 C -0.223 4.223 13 C 0.077 3.923 14 C -0.278 4.278 15 C 0.565 3.435 16 O -0.522 6.522 17 N -0.624 5.624 18 C 0.103 3.897 19 C -0.126 4.126 20 C 0.091 3.909 21 H 0.075 0.925 22 O -0.559 6.559 23 C 0.078 3.922 24 C -0.075 4.075 25 C -0.092 4.092 26 C -0.149 4.149 27 C -0.125 4.125 28 C -0.104 4.104 29 C 0.098 3.902 30 H 0.269 0.731 31 H 0.038 0.962 32 H 0.044 0.956 33 H 0.154 0.846 34 H 0.125 0.875 35 H 0.122 0.878 36 H 0.071 0.929 37 H 0.082 0.918 38 H 0.085 0.915 39 H 0.088 0.912 40 H 0.383 0.617 41 H 0.073 0.927 42 H 0.068 0.932 43 H 0.111 0.889 44 H 0.113 0.887 45 H 0.116 0.884 46 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.427 -9.308 8.980 20.908 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.522 5.522 2 C -0.124 4.124 3 Si 0.698 3.302 4 H -0.196 1.196 5 H -0.205 1.205 6 H -0.190 1.190 7 C -0.584 4.584 8 H 0.100 0.900 9 C 0.087 3.913 10 N -0.110 5.110 11 C 0.033 3.967 12 C -0.229 4.229 13 C 0.056 3.944 14 C -0.299 4.299 15 C 0.359 3.641 16 O -0.400 6.400 17 N -0.361 5.361 18 C -0.020 4.020 19 C -0.164 4.164 20 C 0.031 3.969 21 H 0.092 0.908 22 O -0.364 6.364 23 C -0.046 4.046 24 C -0.079 4.079 25 C -0.110 4.110 26 C -0.168 4.168 27 C -0.144 4.144 28 C -0.124 4.124 29 C -0.008 4.008 30 H 0.079 0.921 31 H 0.056 0.944 32 H 0.062 0.938 33 H 0.171 0.829 34 H 0.143 0.857 35 H 0.140 0.860 36 H 0.089 0.911 37 H 0.101 0.899 38 H 0.104 0.896 39 H 0.106 0.894 40 H 0.231 0.769 41 H 0.092 0.908 42 H 0.087 0.913 43 H 0.129 0.871 44 H 0.131 0.869 45 H 0.134 0.866 46 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges 16.163 -9.006 8.539 20.378 hybrid contribution 0.097 1.595 0.067 1.599 sum 16.260 -7.411 8.606 19.834 Atomic orbital electron populations 1.69877 1.06156 1.27419 1.48721 1.24822 0.94799 0.98843 0.93955 0.86911 0.80359 0.83776 0.79156 1.19590 1.20502 1.18951 1.21222 0.88107 0.95552 1.53492 0.89985 1.20082 0.96651 0.76059 0.98547 1.44104 1.49841 1.13197 1.03889 1.21680 0.94195 0.89660 0.91181 1.18555 1.17966 0.95159 0.91254 1.21671 0.88052 0.96401 0.88236 1.21675 1.04324 0.99144 1.04764 1.16949 0.78898 0.87414 0.80847 1.90995 1.63566 1.52481 1.32912 1.48434 1.47630 1.19748 1.20333 1.22337 0.95902 0.96425 0.87358 1.22846 0.97597 0.93641 1.02291 1.22853 0.83579 0.95207 0.95252 0.90763 1.86520 1.26994 1.30773 1.92139 1.22577 0.95411 0.88304 0.98336 1.18876 1.03219 0.93720 0.92118 1.20225 1.01241 0.97480 0.92088 1.20702 1.03783 0.97196 0.95122 1.20612 1.02017 0.93401 0.98384 1.20149 1.02320 1.00180 0.89770 1.18171 1.02751 0.91144 0.88699 0.92106 0.94408 0.93807 0.82875 0.85734 0.86000 0.91095 0.89927 0.89607 0.89384 0.76948 0.90834 0.91339 0.87072 0.86909 0.86561 0.86236 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.19 13.96 55.43 0.77 -25.41 16 2 C 0.08 2.23 5.47 -17.82 -0.10 2.14 16 3 Si 0.87 20.36 27.47 -169.99 -4.67 15.69 16 4 H -0.27 -6.21 7.11 56.52 0.40 -5.81 16 5 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 6 H -0.26 -5.94 6.54 56.52 0.37 -5.57 16 7 C -0.55 -15.18 9.94 -34.44 -0.34 -15.52 16 8 H 0.08 2.55 8.06 -52.49 -0.42 2.13 16 9 C 0.21 5.00 4.78 -5.19 -0.02 4.97 16 10 N -0.44 -9.98 2.73 -115.38 -0.31 -10.29 16 11 C 0.17 3.49 8.35 -16.45 -0.14 3.35 16 12 C -0.22 -4.19 4.63 -103.41 -0.48 -4.67 16 13 C 0.08 1.11 10.16 -37.30 -0.38 0.73 16 14 C -0.28 -3.61 9.33 -39.34 -0.37 -3.97 16 15 C 0.56 8.65 7.23 -15.02 -0.11 8.54 16 16 O -0.52 -10.24 12.68 5.11 0.06 -10.18 16 17 N -0.62 -7.53 3.33 -173.82 -0.58 -8.11 16 18 C 0.10 0.82 6.55 -2.41 -0.02 0.81 16 19 C -0.13 -0.91 6.83 -24.47 -0.17 -1.08 16 20 C 0.09 0.74 4.32 -24.90 -0.11 0.63 16 21 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 22 O -0.56 -4.73 13.40 -35.23 -0.47 -5.21 16 23 C 0.08 0.86 6.64 -3.06 -0.02 0.84 16 24 C -0.08 -1.50 6.36 -104.93 -0.67 -2.17 16 25 C -0.09 -1.57 10.09 -39.37 -0.40 -1.97 16 26 C -0.15 -2.39 10.03 -39.57 -0.40 -2.79 16 27 C -0.12 -2.14 10.01 -39.56 -0.40 -2.54 16 28 C -0.10 -2.11 9.97 -39.42 -0.39 -2.50 16 29 C 0.10 2.17 6.79 -83.96 -0.57 1.60 16 30 H 0.27 7.39 8.31 -40.82 -0.34 7.05 16 31 H 0.04 0.90 7.58 -51.93 -0.39 0.51 16 32 H 0.04 1.04 7.16 -51.93 -0.37 0.67 16 33 H 0.15 2.98 7.89 -52.49 -0.41 2.57 16 34 H 0.12 1.40 8.06 -52.48 -0.42 0.98 16 35 H 0.12 1.15 6.68 -52.49 -0.35 0.80 16 36 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 37 H 0.08 0.56 7.03 -51.93 -0.36 0.19 16 38 H 0.09 0.70 8.14 -51.93 -0.42 0.28 16 39 H 0.09 0.47 8.14 -51.93 -0.42 0.05 16 40 H 0.38 1.80 9.11 45.56 0.42 2.22 16 41 H 0.07 0.91 8.06 -51.93 -0.42 0.50 16 42 H 0.07 0.79 8.14 -51.93 -0.42 0.37 16 43 H 0.11 1.59 8.06 -52.49 -0.42 1.17 16 44 H 0.11 1.45 8.06 -52.48 -0.42 1.03 16 45 H 0.12 1.66 8.06 -52.48 -0.42 1.23 16 46 H 0.12 2.41 8.06 -52.48 -0.42 1.99 16 LS Contribution 382.64 15.07 5.77 5.77 Total: -1.00 -34.69 382.64 -10.21 -44.90 By element: Atomic # 1 Polarization: 12.16 SS G_CDS: -5.72 Total: 6.45 kcal Atomic # 6 Polarization: -8.54 SS G_CDS: -5.07 Total: -13.61 kcal Atomic # 7 Polarization: -43.70 SS G_CDS: -0.12 Total: -43.82 kcal Atomic # 8 Polarization: -14.98 SS G_CDS: -0.41 Total: -15.38 kcal Atomic # 14 Polarization: 20.36 SS G_CDS: -4.67 Total: 15.69 kcal Total LS contribution 5.77 Total: 5.77 kcal Total: -34.69 -10.21 -44.90 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000492074250.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 58.635 kcal (2) G-P(sol) polarization free energy of solvation -34.689 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 23.947 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.213 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.901 kcal (6) G-S(sol) free energy of system = (1) + (5) 13.734 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds