Wall clock time and date at job start Sat Apr 11 2020 05:59:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86805 * 120.00092 * 2 1 4 4 H 1.48504 * 109.46940 * 269.99991 * 3 2 1 5 5 H 1.48501 * 109.47025 * 29.99920 * 3 2 1 6 6 H 1.48487 * 109.47101 * 149.99839 * 3 2 1 7 7 C 1.37878 * 119.99789 * 179.97438 * 2 1 3 8 8 H 1.07994 * 120.00273 * 0.02562 * 7 2 1 9 9 C 1.50694 * 119.99501 * 180.27618 * 7 2 1 10 10 N 1.46503 * 109.46877 * 179.72650 * 9 7 2 11 11 C 1.35615 * 124.77989 * 264.69548 * 10 9 7 12 12 C 1.36659 * 109.69850 * 179.88436 * 11 10 9 13 13 C 1.46378 * 126.78858 * 180.14246 * 12 11 10 14 14 C 1.35451 * 119.99909 * 312.76188 * 13 12 11 15 15 C 1.41494 * 120.00097 * 348.51222 * 14 13 12 16 16 O 1.21784 * 119.99724 * 353.36586 * 15 14 13 17 17 N 1.34775 * 119.99873 * 173.36513 * 15 14 13 18 18 C 1.47426 * 125.65013 * 359.69074 * 17 15 14 19 19 C 1.55127 * 104.72148 * 155.81748 * 18 17 15 20 20 C 1.55156 * 101.48918 * 37.29197 * 19 18 17 21 21 H 1.09007 * 110.71408 * 82.69411 * 20 19 18 22 22 O 1.42899 * 110.87569 * 205.89824 * 20 19 18 23 23 C 1.47029 * 125.64602 * 179.97438 * 17 15 14 24 24 C 1.47521 * 106.42458 * 0.36390 * 12 11 10 25 25 C 1.39251 * 133.96196 * 179.80221 * 24 12 11 26 26 C 1.37773 * 119.67352 * 179.97438 * 25 24 12 27 27 C 1.38742 * 120.29744 * 359.97438 * 26 25 24 28 28 C 1.37774 * 120.62876 * 0.02562 * 27 26 25 29 29 C 1.37989 * 124.78312 * 84.99819 * 10 9 7 30 30 H 0.97000 * 120.00134 * 0.02562 * 1 2 3 31 31 H 1.09003 * 109.47485 * 299.72246 * 9 7 2 32 32 H 1.08995 * 109.47807 * 59.72521 * 9 7 2 33 33 H 1.08000 * 125.14677 * 0.02562 * 11 10 9 34 34 H 1.08003 * 119.99849 * 132.75515 * 13 12 11 35 35 H 1.08000 * 119.99654 * 168.50656 * 14 13 12 36 36 H 1.08995 * 110.36460 * 274.74446 * 18 17 15 37 37 H 1.08994 * 110.36517 * 37.06970 * 18 17 15 38 38 H 1.09005 * 111.19142 * 279.18870 * 19 18 17 39 39 H 1.08994 * 110.94283 * 155.29307 * 19 18 17 40 40 H 0.96706 * 113.99854 * 175.06643 * 22 20 19 41 41 H 1.09004 * 109.87937 * 300.43943 * 23 17 15 42 42 H 1.08996 * 109.87933 * 61.60450 * 23 17 15 43 43 H 1.07995 * 120.16291 * 359.95290 * 25 24 12 44 44 H 1.08011 * 119.84965 * 180.02562 * 26 25 24 45 45 H 1.08007 * 119.68447 * 179.97438 * 27 26 25 46 46 H 1.08003 * 120.03028 * 180.02562 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 2.4967 2.0464 -1.4001 5 1 1.4466 2.6527 0.7000 6 1 3.5466 1.4402 0.7000 7 6 2.0045 -1.1941 0.0005 8 1 1.4645 -2.1293 0.0005 9 6 3.5114 -1.1940 0.0068 10 7 3.9998 -2.5752 0.0127 11 6 4.3501 -3.2671 1.1253 12 6 4.7580 -4.5240 0.7767 13 6 5.2132 -5.5804 1.6819 14 6 6.1218 -5.3006 2.6466 15 6 6.8111 -4.0650 2.6324 16 8 6.6787 -3.3047 1.6903 17 7 7.6141 -3.7294 3.6615 18 6 7.8594 -4.5485 4.8625 19 6 9.2395 -4.0738 5.3883 20 6 9.1724 -2.5505 5.1011 21 1 8.6350 -2.0318 5.8951 22 8 10.4830 -2.0045 4.9398 23 6 8.3861 -2.4833 3.7749 24 6 4.6539 -4.6038 -0.6927 25 6 4.9216 -5.6000 -1.6280 26 6 4.7130 -5.3522 -2.9671 27 6 4.2379 -4.1173 -3.3847 28 6 3.9689 -3.1229 -2.4699 29 6 4.1737 -3.3535 -1.1134 30 1 -0.4850 0.8400 -0.0004 31 1 3.8785 -0.6827 -0.8831 32 1 3.8711 -0.6777 0.8968 33 1 4.3103 -2.8837 2.1341 34 1 4.8245 -6.5830 1.5805 35 1 6.3201 -6.0206 3.4268 36 1 7.0848 -4.3696 5.6082 37 1 7.8972 -5.6055 4.5995 38 1 10.0540 -4.5403 4.8340 39 1 9.3365 -4.2661 6.4567 40 1 10.4919 -1.0719 4.6843 41 1 9.0785 -2.3986 2.9372 42 1 7.7101 -1.6284 3.7877 43 1 5.2914 -6.5621 -1.3054 44 1 4.9193 -6.1230 -3.6951 45 1 4.0783 -3.9336 -4.4370 46 1 3.5990 -2.1653 -2.8056 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000492074250.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:59:55 Heat of formation + Delta-G solvation = -9.749073 kcal Electronic energy + Delta-G solvation = -29103.615485 eV Core-core repulsion = 25151.706300 eV Total energy + Delta-G solvation = -3951.909185 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.157 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -42.20208 -41.07666 -39.08701 -37.88371 -36.56048 -35.63251 -34.66674 -32.78941 -31.70983 -31.33224 -29.83112 -29.67479 -28.37212 -25.67603 -24.61748 -23.72313 -22.99942 -22.15947 -21.91515 -20.88492 -19.31695 -19.29091 -18.59427 -18.32663 -17.48228 -17.40948 -16.91245 -16.40158 -16.27502 -15.99208 -15.56757 -15.21142 -15.11509 -14.90308 -14.72660 -14.60931 -14.43320 -14.13010 -14.06252 -13.75886 -13.61681 -13.40072 -13.34162 -13.03105 -12.81724 -12.65903 -12.58140 -12.56372 -12.36464 -11.95713 -11.87313 -11.70844 -11.59876 -11.15182 -10.99442 -10.91564 -10.56999 -9.97997 -9.57118 -8.93657 -8.48921 -8.07628 -6.59410 -0.00104 0.48212 0.88520 1.25223 1.25796 1.36542 2.03031 2.09651 2.16883 2.18569 2.53849 2.82683 3.11603 3.23064 3.51030 3.59353 3.86684 3.91107 4.01877 4.05574 4.13117 4.27156 4.29423 4.35043 4.38680 4.42050 4.49585 4.60260 4.69208 4.71197 4.77484 4.81339 4.82229 4.87892 4.97936 5.04359 5.15612 5.17052 5.18390 5.30713 5.41844 5.58226 5.69677 5.75872 5.93755 6.01261 6.10142 6.41801 6.48606 6.55914 6.59571 6.74908 7.05871 7.35960 8.67686 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.008958 B = 0.003703 C = 0.002895 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3125.023867 B = 7559.628562 C = 9670.308748 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.932 5.932 2 C 0.026 3.974 3 Si 0.946 3.054 4 H -0.260 1.260 5 H -0.269 1.269 6 H -0.251 1.251 7 C -0.551 4.551 8 H 0.030 0.970 9 C 0.220 3.780 10 N -0.459 5.459 11 C 0.128 3.872 12 C -0.202 4.202 13 C 0.054 3.946 14 C -0.250 4.250 15 C 0.548 3.452 16 O -0.576 6.576 17 N -0.623 5.623 18 C 0.097 3.903 19 C -0.120 4.120 20 C 0.099 3.901 21 H 0.093 0.907 22 O -0.572 6.572 23 C 0.073 3.927 24 C -0.101 4.101 25 C -0.088 4.088 26 C -0.145 4.145 27 C -0.114 4.114 28 C -0.143 4.143 29 C 0.062 3.938 30 H 0.275 0.725 31 H 0.038 0.962 32 H 0.046 0.954 33 H 0.150 0.850 34 H 0.164 0.836 35 H 0.169 0.831 36 H 0.090 0.910 37 H 0.103 0.897 38 H 0.076 0.924 39 H 0.115 0.885 40 H 0.397 0.603 41 H 0.052 0.948 42 H 0.055 0.945 43 H 0.147 0.853 44 H 0.157 0.843 45 H 0.147 0.853 46 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.906 -11.446 10.203 24.343 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.570 5.570 2 C -0.174 4.174 3 Si 0.768 3.232 4 H -0.185 1.185 5 H -0.193 1.193 6 H -0.175 1.175 7 C -0.589 4.589 8 H 0.048 0.952 9 C 0.099 3.901 10 N -0.136 5.136 11 C -0.004 4.004 12 C -0.209 4.209 13 C 0.034 3.966 14 C -0.270 4.270 15 C 0.343 3.657 16 O -0.457 6.457 17 N -0.359 5.359 18 C -0.025 4.025 19 C -0.158 4.158 20 C 0.039 3.961 21 H 0.111 0.889 22 O -0.380 6.380 23 C -0.051 4.051 24 C -0.106 4.106 25 C -0.106 4.106 26 C -0.164 4.164 27 C -0.133 4.133 28 C -0.164 4.164 29 C -0.044 4.044 30 H 0.084 0.916 31 H 0.056 0.944 32 H 0.064 0.936 33 H 0.167 0.833 34 H 0.182 0.818 35 H 0.186 0.814 36 H 0.108 0.892 37 H 0.121 0.879 38 H 0.095 0.905 39 H 0.134 0.866 40 H 0.247 0.753 41 H 0.070 0.930 42 H 0.073 0.927 43 H 0.165 0.835 44 H 0.174 0.826 45 H 0.164 0.836 46 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges 18.684 -11.180 9.824 23.887 hybrid contribution -0.585 2.116 -0.290 2.214 sum 18.099 -9.065 9.534 22.375 Atomic orbital electron populations 1.70017 1.08112 1.28905 1.49946 1.25763 0.95661 1.02975 0.93025 0.85742 0.79338 0.78275 0.79870 1.18476 1.19338 1.17515 1.21272 0.90100 0.93819 1.53741 0.95154 1.19706 0.94024 0.78013 0.98309 1.43987 1.51766 1.12804 1.05072 1.21802 0.96932 0.90979 0.90700 1.19033 1.15104 0.95158 0.91602 1.21983 0.89655 0.96860 0.88121 1.22043 1.02222 0.98430 1.04332 1.17516 0.79418 0.87906 0.80909 1.90993 1.65290 1.54166 1.35273 1.48529 1.46189 1.20446 1.20701 1.22680 0.96923 0.96908 0.85939 1.22877 0.96703 0.92423 1.03799 1.22882 0.83180 0.96422 0.93595 0.88879 1.86486 1.27150 1.32240 1.92104 1.22666 0.95026 0.87795 0.99619 1.19327 1.04153 0.93782 0.93302 1.20704 0.99809 0.98027 0.92082 1.21204 1.02061 0.97441 0.95674 1.21040 0.99981 0.93031 0.99274 1.20318 1.04971 1.00934 0.90158 1.18685 1.04224 0.92376 0.89112 0.91606 0.94426 0.93595 0.83280 0.81831 0.81376 0.89210 0.87894 0.90542 0.86631 0.75304 0.93004 0.92706 0.83549 0.82566 0.83575 0.87920 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -57.66 13.96 21.45 0.30 -57.36 16 2 C 0.03 1.52 5.47 84.65 0.46 1.98 16 3 Si 0.95 43.27 27.47 68.60 1.88 45.16 16 4 H -0.26 -11.42 7.11 99.48 0.71 -10.71 16 5 H -0.27 -11.75 7.11 99.48 0.71 -11.04 16 6 H -0.25 -10.86 6.54 99.48 0.65 -10.21 16 7 C -0.55 -32.91 9.94 25.60 0.25 -32.65 16 8 H 0.03 2.06 8.06 -2.91 -0.02 2.04 16 9 C 0.22 11.41 4.78 85.63 0.41 11.82 16 10 N -0.46 -22.63 2.73 -518.95 -1.42 -24.04 16 11 C 0.13 5.66 8.35 83.74 0.70 6.36 16 12 C -0.20 -7.75 4.63 -19.08 -0.09 -7.84 16 13 C 0.05 1.45 10.16 23.75 0.24 1.69 16 14 C -0.25 -5.81 9.33 22.43 0.21 -5.60 16 15 C 0.55 16.43 7.23 85.04 0.61 17.04 16 16 O -0.58 -23.43 12.68 -4.62 -0.06 -23.49 16 17 N -0.62 -14.23 3.33 -822.04 -2.73 -16.96 16 18 C 0.10 1.21 6.55 86.93 0.57 1.78 16 19 C -0.12 -1.36 6.83 32.06 0.22 -1.14 16 20 C 0.10 1.42 4.32 31.78 0.14 1.56 16 21 H 0.09 1.02 8.14 -2.38 -0.02 1.01 16 22 O -0.57 -8.81 13.40 -148.98 -2.00 -10.81 16 23 C 0.07 1.61 6.64 86.73 0.58 2.18 16 24 C -0.10 -4.10 6.36 -20.06 -0.13 -4.23 16 25 C -0.09 -2.84 10.09 22.40 0.23 -2.61 16 26 C -0.15 -4.27 10.03 22.28 0.22 -4.05 16 27 C -0.11 -3.83 10.01 22.28 0.22 -3.61 16 28 C -0.14 -6.13 9.97 22.37 0.22 -5.90 16 29 C 0.06 2.87 6.79 38.91 0.26 3.13 16 30 H 0.27 15.62 8.31 -92.71 -0.77 14.85 16 31 H 0.04 1.91 7.58 -2.39 -0.02 1.89 16 32 H 0.05 2.31 7.16 -2.39 -0.02 2.29 16 33 H 0.15 6.33 7.89 -2.91 -0.02 6.30 16 34 H 0.16 3.06 8.06 -2.91 -0.02 3.04 16 35 H 0.17 2.30 6.68 -2.91 -0.02 2.28 16 36 H 0.09 0.86 8.14 -2.39 -0.02 0.84 16 37 H 0.10 0.90 7.03 -2.39 -0.02 0.88 16 38 H 0.08 1.04 8.14 -2.38 -0.02 1.02 16 39 H 0.12 0.73 8.14 -2.39 -0.02 0.71 16 40 H 0.40 3.34 9.11 -74.05 -0.67 2.66 16 41 H 0.05 1.35 8.06 -2.38 -0.02 1.33 16 42 H 0.05 1.33 8.14 -2.39 -0.02 1.31 16 43 H 0.15 3.61 8.06 -2.91 -0.02 3.58 16 44 H 0.16 3.25 8.06 -2.91 -0.02 3.23 16 45 H 0.15 3.89 8.06 -2.91 -0.02 3.87 16 46 H 0.10 4.53 8.06 -2.91 -0.02 4.50 16 Total: -1.00 -83.51 382.64 1.58 -81.93 By element: Atomic # 1 Polarization: 25.40 SS G_CDS: 0.27 Total: 25.66 kcal Atomic # 6 Polarization: -25.42 SS G_CDS: 5.34 Total: -20.09 kcal Atomic # 7 Polarization: -94.52 SS G_CDS: -3.85 Total: -98.37 kcal Atomic # 8 Polarization: -32.24 SS G_CDS: -2.05 Total: -34.30 kcal Atomic # 14 Polarization: 43.27 SS G_CDS: 1.88 Total: 45.16 kcal Total: -83.51 1.58 -81.93 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000492074250.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 72.184 kcal (2) G-P(sol) polarization free energy of solvation -83.515 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.331 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.582 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.933 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.749 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds