Wall clock time and date at job start Sat Apr 11 2020 05:59:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86800 * 120.00238 * 2 1 4 4 H 1.48498 * 109.47109 * 270.00337 * 3 2 1 5 5 H 1.48507 * 109.46754 * 30.00076 * 3 2 1 6 6 H 1.48498 * 109.47278 * 149.99907 * 3 2 1 7 7 C 1.37884 * 119.99985 * 180.02562 * 2 1 3 8 8 H 1.08002 * 119.99697 * 359.97438 * 7 2 1 9 9 C 1.50702 * 119.99942 * 180.27663 * 7 2 1 10 10 N 1.46491 * 109.46957 * 179.72213 * 9 7 2 11 11 C 1.35611 * 124.77980 * 264.69545 * 10 9 7 12 12 C 1.36665 * 109.69878 * 179.86091 * 11 10 9 13 13 C 1.46385 * 126.78522 * 180.13009 * 12 11 10 14 14 C 1.35451 * 120.00330 * 0.30952 * 13 12 11 15 15 C 1.41493 * 120.00159 * 179.97438 * 14 13 12 16 16 O 1.21788 * 119.99768 * 359.97438 * 15 14 13 17 17 N 1.34771 * 120.00117 * 179.97438 * 15 14 13 18 18 C 1.47419 * 125.64707 * 359.69316 * 17 15 14 19 19 C 1.55133 * 104.72533 * 155.81949 * 18 17 15 20 20 C 1.55151 * 101.48638 * 37.28909 * 19 18 17 21 21 H 1.09006 * 110.71740 * 82.69623 * 20 19 18 22 22 O 1.42896 * 110.87756 * 205.90360 * 20 19 18 23 23 C 1.47019 * 125.64944 * 179.97438 * 17 15 14 24 24 C 1.47511 * 106.42610 * 0.38890 * 12 11 10 25 25 C 1.39254 * 133.96400 * 179.76887 * 24 12 11 26 26 C 1.37774 * 119.67293 * 179.97438 * 25 24 12 27 27 C 1.38747 * 120.29662 * 359.97438 * 26 25 24 28 28 C 1.37776 * 120.63182 * 359.97438 * 27 26 25 29 29 C 1.37988 * 124.78778 * 84.99761 * 10 9 7 30 30 H 0.96996 * 119.99730 * 359.97438 * 1 2 3 31 31 H 1.09004 * 109.46965 * 299.72070 * 9 7 2 32 32 H 1.08994 * 109.46990 * 59.71924 * 9 7 2 33 33 H 1.08001 * 125.15235 * 0.02562 * 11 10 9 34 34 H 1.08002 * 119.99400 * 180.30364 * 13 12 11 35 35 H 1.07999 * 119.99696 * 0.02562 * 14 13 12 36 36 H 1.09007 * 110.37048 * 274.74424 * 18 17 15 37 37 H 1.08999 * 110.37402 * 37.06694 * 18 17 15 38 38 H 1.09002 * 111.18614 * 279.19208 * 19 18 17 39 39 H 1.08993 * 110.94352 * 155.28898 * 19 18 17 40 40 H 0.96694 * 114.00401 * 175.06718 * 22 20 19 41 41 H 1.08998 * 109.88490 * 300.44289 * 23 17 15 42 42 H 1.09001 * 109.88085 * 61.60942 * 23 17 15 43 43 H 1.07996 * 120.16289 * 359.97336 * 25 24 12 44 44 H 1.08002 * 119.85415 * 180.02562 * 26 25 24 45 45 H 1.08005 * 119.68184 * 180.02562 * 27 26 25 46 46 H 1.07997 * 120.03184 * 180.02562 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4966 2.0464 -1.4001 5 1 1.4466 2.6526 0.7001 6 1 3.5467 1.4401 0.7000 7 6 2.0046 -1.1941 -0.0005 8 1 1.4645 -2.1294 -0.0005 9 6 3.5116 -1.1941 0.0058 10 7 3.9998 -2.5753 0.0106 11 6 4.3501 -3.2681 1.1225 12 6 4.7574 -4.5249 0.7729 13 6 5.2128 -5.5820 1.6773 14 6 5.2537 -5.3597 3.0128 15 6 5.6933 -6.3818 3.8870 16 8 6.0344 -7.4615 3.4387 17 7 5.7345 -6.1604 5.2158 18 6 5.3582 -4.9044 5.8896 19 6 4.9811 -5.3290 7.3333 20 6 6.0223 -6.4458 7.6088 21 1 6.9720 -6.0172 7.9289 22 8 5.5326 -7.3695 8.5828 23 6 6.1677 -7.1296 6.2329 24 6 4.6536 -4.6034 -0.6964 25 6 4.9217 -5.5988 -1.6327 26 6 4.7132 -5.3498 -2.9716 27 6 4.2381 -4.1145 -3.3881 28 6 3.9678 -3.1212 -2.4724 29 6 4.1738 -3.3527 -1.1161 30 1 -0.4849 0.8400 0.0004 31 1 3.8786 -0.6821 -0.8838 32 1 3.8711 -0.6785 0.8962 33 1 4.3104 -2.8855 2.1317 34 1 5.5159 -6.5393 1.2796 35 1 4.9500 -4.4026 3.4105 36 1 6.2014 -4.2136 5.9030 37 1 4.5016 -4.4490 5.3927 38 1 3.9655 -5.7227 7.3755 39 1 5.1053 -4.4989 8.0286 40 1 6.1143 -8.1269 8.7341 41 1 5.5367 -8.0174 6.1915 42 1 7.2089 -7.4040 6.0637 43 1 5.2912 -6.5612 -1.3108 44 1 4.9197 -6.1198 -3.7002 45 1 4.0778 -3.9302 -4.4402 46 1 3.5979 -2.1635 -2.8073 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000492074251.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:59:58 Heat of formation + Delta-G solvation = -3.501143 kcal Electronic energy + Delta-G solvation = -28059.805070 eV Core-core repulsion = 24108.166816 eV Total energy + Delta-G solvation = -3951.638254 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.157 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -40.94892 -40.20440 -38.18995 -36.72751 -35.78678 -34.41213 -32.99761 -31.46753 -30.84246 -29.97479 -29.01423 -28.42596 -27.08386 -24.59069 -23.18665 -22.72300 -21.85625 -21.31664 -20.67843 -19.51133 -18.23570 -17.83431 -17.48992 -17.28564 -16.42238 -16.11966 -15.91925 -15.27413 -15.10506 -14.68194 -14.59891 -14.26253 -13.96997 -13.69407 -13.54600 -13.44539 -13.17980 -13.07516 -12.82549 -12.66625 -12.46357 -12.19496 -12.05273 -11.99270 -11.74162 -11.48073 -11.17813 -11.08936 -11.02541 -10.88685 -10.57917 -10.51766 -10.43260 -10.00574 -9.80564 -9.63657 -8.94313 -8.85872 -8.65710 -7.80260 -6.93577 -6.41364 -4.47255 1.00762 1.66886 2.10429 2.91688 3.02546 3.08329 3.11208 3.12260 3.45632 3.74306 3.83741 4.06985 4.15023 4.24009 4.33825 4.66545 4.85889 4.93932 4.94007 5.03072 5.06935 5.10406 5.30869 5.32366 5.38760 5.43745 5.49555 5.50125 5.60347 5.62240 5.74974 5.80060 5.94706 6.01184 6.11281 6.13772 6.22850 6.27060 6.33391 6.59276 6.69791 6.88626 6.95909 7.09755 7.10518 7.19072 7.22082 7.49299 7.67997 7.70753 8.13228 8.30695 8.63069 9.12954 10.70664 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.009565 B = 0.002867 C = 0.002282 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2926.633676 B = 9765.617369 C =12268.733126 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.881 5.881 2 C 0.081 3.919 3 Si 0.873 3.127 4 H -0.271 1.271 5 H -0.279 1.279 6 H -0.265 1.265 7 C -0.551 4.551 8 H 0.083 0.917 9 C 0.203 3.797 10 N -0.433 5.433 11 C 0.130 3.870 12 C -0.220 4.220 13 C 0.085 3.915 14 C -0.293 4.293 15 C 0.579 3.421 16 O -0.561 6.561 17 N -0.622 5.622 18 C 0.101 3.899 19 C -0.126 4.126 20 C 0.091 3.909 21 H 0.075 0.925 22 O -0.557 6.557 23 C 0.078 3.922 24 C -0.083 4.083 25 C -0.087 4.087 26 C -0.144 4.144 27 C -0.117 4.117 28 C -0.103 4.103 29 C 0.097 3.903 30 H 0.270 0.730 31 H 0.041 0.959 32 H 0.048 0.952 33 H 0.170 0.830 34 H 0.128 0.872 35 H 0.120 0.880 36 H 0.073 0.927 37 H 0.088 0.912 38 H 0.087 0.913 39 H 0.090 0.910 40 H 0.381 0.619 41 H 0.074 0.926 42 H 0.067 0.933 43 H 0.117 0.883 44 H 0.117 0.883 45 H 0.120 0.880 46 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.163 -8.194 9.108 17.982 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.517 5.517 2 C -0.124 4.124 3 Si 0.699 3.301 4 H -0.196 1.196 5 H -0.204 1.204 6 H -0.189 1.189 7 C -0.589 4.589 8 H 0.101 0.899 9 C 0.084 3.916 10 N -0.107 5.107 11 C -0.006 4.006 12 C -0.228 4.228 13 C 0.064 3.936 14 C -0.315 4.315 15 C 0.375 3.625 16 O -0.443 6.443 17 N -0.358 5.358 18 C -0.022 4.022 19 C -0.164 4.164 20 C 0.031 3.969 21 H 0.093 0.907 22 O -0.362 6.362 23 C -0.046 4.046 24 C -0.087 4.087 25 C -0.105 4.105 26 C -0.163 4.163 27 C -0.137 4.137 28 C -0.123 4.123 29 C -0.008 4.008 30 H 0.081 0.919 31 H 0.059 0.941 32 H 0.066 0.934 33 H 0.187 0.813 34 H 0.146 0.854 35 H 0.138 0.862 36 H 0.091 0.909 37 H 0.106 0.894 38 H 0.106 0.894 39 H 0.108 0.892 40 H 0.229 0.771 41 H 0.093 0.907 42 H 0.086 0.914 43 H 0.135 0.865 44 H 0.135 0.865 45 H 0.138 0.862 46 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges 12.521 -7.829 8.783 17.181 hybrid contribution 0.580 0.755 0.081 0.955 sum 13.101 -7.074 8.864 17.327 Atomic orbital electron populations 1.69868 1.06210 1.27610 1.48021 1.24833 0.94817 0.98894 0.93836 0.86903 0.80286 0.83744 0.79166 1.19590 1.20398 1.18925 1.21166 0.87851 0.95665 1.54214 0.89924 1.20199 0.97098 0.75458 0.98885 1.44296 1.48871 1.13616 1.03929 1.22215 0.95254 0.91217 0.91927 1.18856 1.17732 0.94849 0.91320 1.21610 0.84890 0.95670 0.91453 1.21366 1.15511 1.00618 0.93983 1.16746 0.77468 0.88059 0.80200 1.90802 1.50768 1.26945 1.75768 1.48208 1.67413 1.14570 1.05566 1.22402 1.00941 0.87072 0.91778 1.22859 1.00147 0.97625 0.95790 1.22860 0.97303 0.90064 0.86663 0.90743 1.86549 1.51420 1.37998 1.60267 1.22595 1.00526 0.93609 0.87862 1.18991 1.03620 0.93784 0.92313 1.20336 1.00473 0.97695 0.92021 1.20803 1.03020 0.97232 0.95225 1.20716 1.01035 0.93238 0.98662 1.20193 1.02108 1.00442 0.89571 1.18256 1.02725 0.91000 0.88860 0.91932 0.94100 0.93391 0.81282 0.85393 0.86164 0.90918 0.89411 0.89388 0.89169 0.77097 0.90722 0.91437 0.86452 0.86470 0.86172 0.85852 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -25.00 13.96 55.43 0.77 -24.22 16 2 C 0.08 2.14 5.47 -17.82 -0.10 2.04 16 3 Si 0.87 18.94 27.47 -169.99 -4.67 14.27 16 4 H -0.27 -5.80 7.11 56.52 0.40 -5.40 16 5 H -0.28 -6.06 7.11 56.52 0.40 -5.66 16 6 H -0.26 -5.35 6.54 56.52 0.37 -4.98 16 7 C -0.55 -14.25 9.94 -34.44 -0.34 -14.60 16 8 H 0.08 2.44 8.06 -52.49 -0.42 2.02 16 9 C 0.20 4.32 4.78 -5.20 -0.02 4.30 16 10 N -0.43 -8.59 2.73 -115.38 -0.31 -8.90 16 11 C 0.13 2.25 10.65 -16.45 -0.18 2.08 16 12 C -0.22 -3.73 6.24 -103.41 -0.65 -4.38 16 13 C 0.08 1.30 9.68 -37.30 -0.36 0.94 16 14 C -0.29 -4.15 8.82 -39.34 -0.35 -4.49 16 15 C 0.58 8.75 7.60 -15.02 -0.11 8.63 16 16 O -0.56 -10.31 16.43 5.11 0.08 -10.22 16 17 N -0.62 -7.44 3.32 -173.82 -0.58 -8.02 16 18 C 0.10 0.88 6.50 -2.41 -0.02 0.87 16 19 C -0.13 -0.98 6.83 -24.46 -0.17 -1.15 16 20 C 0.09 0.69 4.32 -24.90 -0.11 0.58 16 21 H 0.07 0.45 8.14 -51.93 -0.42 0.02 16 22 O -0.56 -4.37 13.40 -35.23 -0.47 -4.85 16 23 C 0.08 0.78 6.64 -3.06 -0.02 0.76 16 24 C -0.08 -1.50 6.36 -104.93 -0.67 -2.17 16 25 C -0.09 -1.36 10.09 -39.37 -0.40 -1.76 16 26 C -0.14 -2.08 10.03 -39.56 -0.40 -2.48 16 27 C -0.12 -1.78 10.01 -39.56 -0.40 -2.18 16 28 C -0.10 -1.85 9.97 -39.42 -0.39 -2.25 16 29 C 0.10 1.89 6.79 -83.96 -0.57 1.32 16 30 H 0.27 7.13 8.31 -40.82 -0.34 6.79 16 31 H 0.04 0.85 7.58 -51.93 -0.39 0.46 16 32 H 0.05 0.96 7.16 -51.93 -0.37 0.59 16 33 H 0.17 2.39 7.19 -52.49 -0.38 2.02 16 34 H 0.13 1.97 7.45 -52.49 -0.39 1.58 16 35 H 0.12 1.46 5.55 -52.49 -0.29 1.17 16 36 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 37 H 0.09 0.75 7.10 -51.93 -0.37 0.38 16 38 H 0.09 0.79 8.14 -51.93 -0.42 0.36 16 39 H 0.09 0.54 8.14 -51.93 -0.42 0.12 16 40 H 0.38 1.37 9.11 45.56 0.42 1.79 16 41 H 0.07 0.83 8.06 -51.93 -0.42 0.41 16 42 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 43 H 0.12 1.59 8.06 -52.49 -0.42 1.16 16 44 H 0.12 1.34 8.06 -52.49 -0.42 0.92 16 45 H 0.12 1.49 8.06 -52.48 -0.42 1.07 16 46 H 0.12 2.20 8.06 -52.49 -0.42 1.78 16 LS Contribution 387.27 15.07 5.84 5.84 Total: -1.00 -32.93 387.27 -10.17 -43.10 By element: Atomic # 1 Polarization: 12.53 SS G_CDS: -5.59 Total: 6.94 kcal Atomic # 6 Polarization: -8.69 SS G_CDS: -5.24 Total: -13.92 kcal Atomic # 7 Polarization: -41.02 SS G_CDS: -0.12 Total: -41.14 kcal Atomic # 8 Polarization: -14.68 SS G_CDS: -0.39 Total: -15.07 kcal Atomic # 14 Polarization: 18.94 SS G_CDS: -4.67 Total: 14.27 kcal Total LS contribution 5.84 Total: 5.84 kcal Total: -32.93 -10.17 -43.10 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000492074251.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.595 kcal (2) G-P(sol) polarization free energy of solvation -32.926 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.670 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.171 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.097 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.501 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds