Wall clock time and date at job start Sat Apr 11 2020 05:59:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86800 * 120.00238 * 2 1 4 4 H 1.48498 * 109.47109 * 270.00337 * 3 2 1 5 5 H 1.48507 * 109.46754 * 30.00076 * 3 2 1 6 6 H 1.48498 * 109.47278 * 149.99907 * 3 2 1 7 7 C 1.37884 * 119.99985 * 180.02562 * 2 1 3 8 8 H 1.08002 * 119.99697 * 359.97438 * 7 2 1 9 9 C 1.50702 * 119.99942 * 180.27663 * 7 2 1 10 10 N 1.46491 * 109.46957 * 179.72213 * 9 7 2 11 11 C 1.35611 * 124.77980 * 264.69545 * 10 9 7 12 12 C 1.36665 * 109.69878 * 179.86091 * 11 10 9 13 13 C 1.46385 * 126.78522 * 180.13009 * 12 11 10 14 14 C 1.35451 * 120.00330 * 0.30952 * 13 12 11 15 15 C 1.41493 * 120.00159 * 179.97438 * 14 13 12 16 16 O 1.21788 * 119.99768 * 359.97438 * 15 14 13 17 17 N 1.34771 * 120.00117 * 179.97438 * 15 14 13 18 18 C 1.47419 * 125.64707 * 359.69316 * 17 15 14 19 19 C 1.55133 * 104.72533 * 155.81949 * 18 17 15 20 20 C 1.55151 * 101.48638 * 37.28909 * 19 18 17 21 21 H 1.09006 * 110.71740 * 82.69623 * 20 19 18 22 22 O 1.42896 * 110.87756 * 205.90360 * 20 19 18 23 23 C 1.47019 * 125.64944 * 179.97438 * 17 15 14 24 24 C 1.47511 * 106.42610 * 0.38890 * 12 11 10 25 25 C 1.39254 * 133.96400 * 179.76887 * 24 12 11 26 26 C 1.37774 * 119.67293 * 179.97438 * 25 24 12 27 27 C 1.38747 * 120.29662 * 359.97438 * 26 25 24 28 28 C 1.37776 * 120.63182 * 359.97438 * 27 26 25 29 29 C 1.37988 * 124.78778 * 84.99761 * 10 9 7 30 30 H 0.96996 * 119.99730 * 359.97438 * 1 2 3 31 31 H 1.09004 * 109.46965 * 299.72070 * 9 7 2 32 32 H 1.08994 * 109.46990 * 59.71924 * 9 7 2 33 33 H 1.08001 * 125.15235 * 0.02562 * 11 10 9 34 34 H 1.08002 * 119.99400 * 180.30364 * 13 12 11 35 35 H 1.07999 * 119.99696 * 0.02562 * 14 13 12 36 36 H 1.09007 * 110.37048 * 274.74424 * 18 17 15 37 37 H 1.08999 * 110.37402 * 37.06694 * 18 17 15 38 38 H 1.09002 * 111.18614 * 279.19208 * 19 18 17 39 39 H 1.08993 * 110.94352 * 155.28898 * 19 18 17 40 40 H 0.96694 * 114.00401 * 175.06718 * 22 20 19 41 41 H 1.08998 * 109.88490 * 300.44289 * 23 17 15 42 42 H 1.09001 * 109.88085 * 61.60942 * 23 17 15 43 43 H 1.07996 * 120.16289 * 359.97336 * 25 24 12 44 44 H 1.08002 * 119.85415 * 180.02562 * 26 25 24 45 45 H 1.08005 * 119.68184 * 180.02562 * 27 26 25 46 46 H 1.07997 * 120.03184 * 180.02562 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4966 2.0464 -1.4001 5 1 1.4466 2.6526 0.7001 6 1 3.5467 1.4401 0.7000 7 6 2.0046 -1.1941 -0.0005 8 1 1.4645 -2.1294 -0.0005 9 6 3.5116 -1.1941 0.0058 10 7 3.9998 -2.5753 0.0106 11 6 4.3501 -3.2681 1.1225 12 6 4.7574 -4.5249 0.7729 13 6 5.2128 -5.5820 1.6773 14 6 5.2537 -5.3597 3.0128 15 6 5.6933 -6.3818 3.8870 16 8 6.0344 -7.4615 3.4387 17 7 5.7345 -6.1604 5.2158 18 6 5.3582 -4.9044 5.8896 19 6 4.9811 -5.3290 7.3333 20 6 6.0223 -6.4458 7.6088 21 1 6.9720 -6.0172 7.9289 22 8 5.5326 -7.3695 8.5828 23 6 6.1677 -7.1296 6.2329 24 6 4.6536 -4.6034 -0.6964 25 6 4.9217 -5.5988 -1.6327 26 6 4.7132 -5.3498 -2.9716 27 6 4.2381 -4.1145 -3.3881 28 6 3.9678 -3.1212 -2.4724 29 6 4.1738 -3.3527 -1.1161 30 1 -0.4849 0.8400 0.0004 31 1 3.8786 -0.6821 -0.8838 32 1 3.8711 -0.6785 0.8962 33 1 4.3104 -2.8855 2.1317 34 1 5.5159 -6.5393 1.2796 35 1 4.9500 -4.4026 3.4105 36 1 6.2014 -4.2136 5.9030 37 1 4.5016 -4.4490 5.3927 38 1 3.9655 -5.7227 7.3755 39 1 5.1053 -4.4989 8.0286 40 1 6.1143 -8.1269 8.7341 41 1 5.5367 -8.0174 6.1915 42 1 7.2089 -7.4040 6.0637 43 1 5.2912 -6.5612 -1.3108 44 1 4.9197 -6.1198 -3.7002 45 1 4.0778 -3.9302 -4.4402 46 1 3.5979 -2.1635 -2.8073 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000492074251.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:59:57 Heat of formation + Delta-G solvation = -24.481999 kcal Electronic energy + Delta-G solvation = -28060.714869 eV Core-core repulsion = 24108.166816 eV Total energy + Delta-G solvation = -3952.548053 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.157 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -42.27470 -41.19038 -39.07720 -38.01207 -36.54774 -35.87169 -34.75194 -32.79882 -31.77150 -31.38120 -29.92693 -29.73029 -28.46014 -25.78596 -24.59576 -23.87317 -23.06266 -22.16132 -21.95122 -20.63900 -19.39504 -19.24298 -18.68742 -18.38365 -17.59936 -17.36290 -16.98627 -16.44815 -16.35813 -16.22497 -15.59195 -15.42637 -15.10291 -14.91357 -14.89130 -14.52757 -14.37943 -14.22910 -14.08691 -13.82987 -13.65942 -13.43776 -13.30773 -12.95268 -12.70654 -12.64543 -12.59622 -12.47484 -12.31042 -12.04708 -11.84643 -11.71878 -11.69862 -11.23508 -11.16686 -10.95173 -10.92410 -10.08461 -9.66880 -9.12068 -8.42750 -8.24347 -6.54409 -0.22117 0.40159 0.81948 1.34050 1.34826 1.44636 1.84216 1.99647 2.07869 2.24124 2.56670 2.90459 3.05308 3.23170 3.48243 3.58204 3.73722 3.79474 3.86239 4.07876 4.11907 4.21481 4.26281 4.31097 4.34279 4.40752 4.54169 4.55650 4.61004 4.67062 4.70107 4.76768 4.82457 4.83443 4.93542 4.95552 5.08686 5.14705 5.21102 5.21551 5.45411 5.50982 5.64522 5.71137 5.81333 5.94888 5.98040 6.35703 6.41306 6.46498 6.53243 6.81709 7.10943 7.16674 8.73988 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.009565 B = 0.002867 C = 0.002282 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2926.633676 B = 9765.617369 C =12268.733126 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.937 5.937 2 C 0.022 3.978 3 Si 0.949 3.051 4 H -0.265 1.265 5 H -0.279 1.279 6 H -0.234 1.234 7 C -0.553 4.553 8 H 0.026 0.974 9 C 0.213 3.787 10 N -0.452 5.452 11 C 0.114 3.886 12 C -0.215 4.215 13 C 0.072 3.928 14 C -0.274 4.274 15 C 0.569 3.431 16 O -0.603 6.603 17 N -0.621 5.621 18 C 0.094 3.906 19 C -0.125 4.125 20 C 0.101 3.899 21 H 0.101 0.899 22 O -0.573 6.573 23 C 0.072 3.928 24 C -0.106 4.106 25 C -0.093 4.093 26 C -0.138 4.138 27 C -0.109 4.109 28 C -0.134 4.134 29 C 0.066 3.934 30 H 0.273 0.727 31 H 0.048 0.952 32 H 0.070 0.930 33 H 0.196 0.804 34 H 0.124 0.876 35 H 0.143 0.857 36 H 0.096 0.904 37 H 0.089 0.911 38 H 0.072 0.928 39 H 0.115 0.885 40 H 0.399 0.601 41 H 0.057 0.943 42 H 0.071 0.929 43 H 0.138 0.862 44 H 0.155 0.845 45 H 0.150 0.850 46 H 0.113 0.887 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.538 -7.514 10.131 20.013 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.575 5.575 2 C -0.178 4.178 3 Si 0.770 3.230 4 H -0.190 1.190 5 H -0.204 1.204 6 H -0.157 1.157 7 C -0.591 4.591 8 H 0.045 0.955 9 C 0.093 3.907 10 N -0.128 5.128 11 C -0.020 4.020 12 C -0.222 4.222 13 C 0.051 3.949 14 C -0.295 4.295 15 C 0.365 3.635 16 O -0.488 6.488 17 N -0.354 5.354 18 C -0.027 4.027 19 C -0.162 4.162 20 C 0.042 3.958 21 H 0.118 0.882 22 O -0.381 6.381 23 C -0.051 4.051 24 C -0.109 4.109 25 C -0.111 4.111 26 C -0.157 4.157 27 C -0.128 4.128 28 C -0.154 4.154 29 C -0.039 4.039 30 H 0.082 0.918 31 H 0.066 0.934 32 H 0.087 0.913 33 H 0.213 0.787 34 H 0.142 0.858 35 H 0.161 0.839 36 H 0.114 0.886 37 H 0.108 0.892 38 H 0.090 0.910 39 H 0.133 0.867 40 H 0.249 0.751 41 H 0.076 0.924 42 H 0.089 0.911 43 H 0.156 0.844 44 H 0.173 0.827 45 H 0.168 0.832 46 H 0.131 0.869 Dipole moment (debyes) X Y Z Total from point charges 14.926 -7.178 9.859 19.275 hybrid contribution -0.181 0.313 -0.196 0.412 sum 14.746 -6.865 9.663 18.919 Atomic orbital electron populations 1.70039 1.08522 1.28887 1.50057 1.25836 0.95587 1.03302 0.93058 0.85710 0.79840 0.77757 0.79693 1.18959 1.20401 1.15679 1.21291 0.90491 0.93578 1.53764 0.95525 1.19946 0.93747 0.77133 0.99911 1.44209 1.50366 1.13317 1.04867 1.22669 0.95512 0.91360 0.92488 1.18999 1.16960 0.94996 0.91260 1.21512 0.86270 0.95260 0.91824 1.21552 1.13411 1.01115 0.93450 1.16923 0.77474 0.87617 0.81456 1.90776 1.52720 1.28434 1.76827 1.48303 1.65875 1.16234 1.05020 1.22687 1.01981 0.86010 0.92055 1.22883 0.99311 0.98502 0.95548 1.22861 0.98309 0.89616 0.85036 0.88165 1.86511 1.52637 1.38976 1.59944 1.22773 1.00246 0.93099 0.88986 1.19358 1.04333 0.93973 0.93283 1.20716 0.99979 0.98033 0.92407 1.21245 1.01329 0.97638 0.95464 1.21119 0.99231 0.92752 0.99688 1.20378 1.03993 1.01172 0.89876 1.18668 1.03933 0.91880 0.89431 0.91795 0.93407 0.91253 0.78687 0.85809 0.83941 0.88582 0.89237 0.90973 0.86715 0.75076 0.92422 0.91063 0.84422 0.82736 0.83201 0.86899 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -55.17 13.96 21.45 0.30 -54.87 16 2 C 0.02 1.19 5.47 84.66 0.46 1.65 16 3 Si 0.95 38.66 27.47 68.60 1.88 40.55 16 4 H -0.26 -10.49 7.11 99.48 0.71 -9.79 16 5 H -0.28 -11.29 7.11 99.48 0.71 -10.58 16 6 H -0.23 -8.32 6.54 99.48 0.65 -7.67 16 7 C -0.55 -29.65 9.94 25.60 0.25 -29.39 16 8 H 0.03 1.68 8.06 -2.91 -0.02 1.65 16 9 C 0.21 9.06 4.78 85.64 0.41 9.47 16 10 N -0.45 -18.19 2.73 -518.95 -1.42 -19.60 16 11 C 0.11 3.92 10.65 83.74 0.89 4.81 16 12 C -0.21 -7.29 6.24 -19.08 -0.12 -7.41 16 13 C 0.07 2.21 9.68 23.75 0.23 2.44 16 14 C -0.27 -7.49 8.82 22.43 0.20 -7.29 16 15 C 0.57 16.89 7.60 85.04 0.65 17.53 16 16 O -0.60 -22.36 16.43 -4.63 -0.08 -22.44 16 17 N -0.62 -14.02 3.32 -822.03 -2.73 -16.75 16 18 C 0.09 1.41 6.50 86.93 0.57 1.98 16 19 C -0.12 -1.61 6.83 32.06 0.22 -1.39 16 20 C 0.10 1.29 4.32 31.78 0.14 1.42 16 21 H 0.10 0.82 8.14 -2.38 -0.02 0.80 16 22 O -0.57 -7.82 13.40 -148.98 -2.00 -9.82 16 23 C 0.07 1.36 6.64 86.73 0.58 1.94 16 24 C -0.11 -3.83 6.36 -20.07 -0.13 -3.95 16 25 C -0.09 -2.83 10.09 22.40 0.23 -2.60 16 26 C -0.14 -3.70 10.03 22.28 0.22 -3.48 16 27 C -0.11 -3.18 10.01 22.28 0.22 -2.96 16 28 C -0.13 -4.91 9.97 22.37 0.22 -4.69 16 29 C 0.07 2.62 6.79 38.91 0.26 2.88 16 30 H 0.27 14.86 8.31 -92.71 -0.77 14.09 16 31 H 0.05 1.96 7.58 -2.38 -0.02 1.94 16 32 H 0.07 2.65 7.16 -2.39 -0.02 2.63 16 33 H 0.20 5.28 7.19 -2.91 -0.02 5.26 16 34 H 0.12 3.86 7.45 -2.91 -0.02 3.84 16 35 H 0.14 3.18 5.55 -2.91 -0.02 3.16 16 36 H 0.10 1.06 8.14 -2.38 -0.02 1.04 16 37 H 0.09 1.32 7.10 -2.39 -0.02 1.31 16 38 H 0.07 1.18 8.14 -2.39 -0.02 1.16 16 39 H 0.11 0.96 8.14 -2.39 -0.02 0.94 16 40 H 0.40 2.11 9.11 -74.06 -0.67 1.44 16 41 H 0.06 1.28 8.06 -2.39 -0.02 1.26 16 42 H 0.07 1.29 8.14 -2.39 -0.02 1.27 16 43 H 0.14 3.52 8.06 -2.91 -0.02 3.50 16 44 H 0.16 2.96 8.06 -2.91 -0.02 2.94 16 45 H 0.15 3.38 8.06 -2.91 -0.02 3.35 16 46 H 0.11 4.21 8.06 -2.91 -0.02 4.19 16 Total: -1.00 -75.99 387.27 1.74 -74.26 By element: Atomic # 1 Polarization: 27.45 SS G_CDS: 0.27 Total: 27.73 kcal Atomic # 6 Polarization: -24.55 SS G_CDS: 5.50 Total: -19.05 kcal Atomic # 7 Polarization: -87.38 SS G_CDS: -3.85 Total: -91.23 kcal Atomic # 8 Polarization: -30.18 SS G_CDS: -2.07 Total: -32.25 kcal Atomic # 14 Polarization: 38.66 SS G_CDS: 1.88 Total: 40.55 kcal Total: -75.99 1.74 -74.26 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000492074251.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.773 kcal (2) G-P(sol) polarization free energy of solvation -75.995 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.221 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.739 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.255 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.482 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds