Wall clock time and date at job start Sat Apr 11 2020 06:00:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31508 * 1 3 3 Si 1.86802 * 120.00209 * 2 1 4 4 H 1.48499 * 109.47240 * 179.97438 * 3 2 1 5 5 H 1.48501 * 109.46993 * 299.99796 * 3 2 1 6 6 H 1.48499 * 109.47233 * 59.99372 * 3 2 1 7 7 C 1.37877 * 120.00302 * 179.97438 * 2 1 3 8 8 H 1.07998 * 120.00557 * 180.02562 * 7 2 1 9 9 C 1.50707 * 120.00002 * 0.02562 * 7 2 1 10 10 N 1.46496 * 109.47423 * 180.02562 * 9 7 2 11 11 C 1.35603 * 124.78262 * 265.02488 * 10 9 7 12 12 C 1.36672 * 109.69704 * 179.41441 * 11 10 9 13 13 C 1.46375 * 126.78587 * 179.91082 * 12 11 10 14 14 C 1.35453 * 119.99963 * 312.55707 * 13 12 11 15 15 C 1.41493 * 120.00491 * 348.85312 * 14 13 12 16 16 O 1.21793 * 119.99366 * 353.13322 * 15 14 13 17 17 N 1.34772 * 120.00693 * 173.13447 * 15 14 13 18 18 C 1.46499 * 120.00453 * 180.02562 * 17 15 14 19 19 H 1.08999 * 115.54805 * 9.32362 * 18 17 15 20 20 C 1.52999 * 117.50074 * 223.62570 * 18 17 15 21 21 C 1.52992 * 117.50313 * 155.00123 * 18 17 15 22 22 H 1.09003 * 117.49925 * 359.97438 * 21 18 17 23 23 C 1.52998 * 117.49912 * 214.98181 * 21 18 17 24 24 O 1.42904 * 109.47274 * 174.99803 * 23 21 18 25 25 C 1.47517 * 106.42461 * 0.62521 * 12 11 10 26 26 C 1.39245 * 133.96574 * 179.28859 * 25 12 11 27 27 C 1.37774 * 119.68056 * 179.97438 * 26 25 12 28 28 C 1.38749 * 120.29204 * 0.02562 * 27 26 25 29 29 C 1.37782 * 120.62924 * 359.97438 * 28 27 26 30 30 C 1.37987 * 124.77827 * 84.99774 * 10 9 7 31 31 H 0.96996 * 120.00376 * 0.02562 * 1 2 3 32 32 H 1.09001 * 109.46709 * 59.99488 * 9 7 2 33 33 H 1.08999 * 109.46665 * 300.00240 * 9 7 2 34 34 H 1.07997 * 125.14828 * 359.97438 * 11 10 9 35 35 H 1.08001 * 120.00041 * 132.55600 * 13 12 11 36 36 H 1.08007 * 119.99985 * 168.84989 * 14 13 12 37 37 H 0.97002 * 119.99798 * 0.02562 * 17 15 14 38 38 H 1.08998 * 117.49848 * 359.97438 * 20 18 17 39 39 H 1.08996 * 117.50235 * 145.02068 * 20 18 17 40 40 H 1.09004 * 109.47104 * 294.99437 * 23 21 18 41 41 H 1.08997 * 109.47590 * 54.99247 * 23 21 18 42 42 H 0.96697 * 114.00193 * 179.97438 * 24 23 21 43 43 H 1.07998 * 120.16293 * 0.02562 * 26 25 12 44 44 H 1.07998 * 119.86042 * 180.02562 * 27 26 25 45 45 H 1.07996 * 119.68859 * 180.02562 * 28 27 26 46 46 H 1.08003 * 120.03240 * 180.02562 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.7091 1.3463 0.0006 5 1 1.8904 2.3964 -1.2125 6 1 1.8903 2.3965 1.2124 7 6 2.0045 -1.1940 0.0005 8 1 3.0845 -1.1941 0.0010 9 6 1.2511 -2.4992 0.0005 10 7 2.2030 -3.6127 0.0018 11 6 2.6332 -4.2639 -1.1071 12 6 3.5238 -5.2382 -0.7528 13 6 4.2151 -6.1630 -1.6525 14 6 3.5202 -6.8238 -2.6091 15 6 2.1054 -6.8080 -2.5942 16 8 1.5120 -6.3081 -1.6554 17 7 1.4145 -7.3460 -3.6187 18 6 -0.0503 -7.3291 -3.6034 19 1 -0.5053 -6.7290 -2.8154 20 6 -0.7761 -8.6079 -4.0263 21 6 -0.7717 -7.3892 -4.9513 22 1 -0.1563 -7.4410 -5.8495 23 6 -2.0767 -6.6027 -5.0899 24 8 -2.5400 -6.6826 -6.4393 25 6 3.6374 -5.1850 0.7170 26 6 4.3606 -5.9137 1.6577 27 6 4.2437 -5.6061 2.9956 28 6 3.4099 -4.5762 3.4067 29 6 2.6886 -3.8471 2.4865 30 6 2.7887 -4.1462 1.1315 31 1 -0.4850 0.8400 -0.0004 32 1 0.6247 -2.5571 -0.8897 33 1 0.6241 -2.5567 0.8903 34 1 2.3260 -4.0401 -2.1180 35 1 5.2793 -6.3185 -1.5535 36 1 4.0460 -7.3628 -3.3834 37 1 1.8871 -7.7445 -4.3661 38 1 -0.1637 -9.4617 -4.3162 39 1 -1.7087 -8.8493 -3.5165 40 1 -2.8279 -7.0248 -4.4222 41 1 -1.9019 -5.5595 -4.8268 42 1 -3.3657 -6.2058 -6.6006 43 1 5.0106 -6.7155 1.3401 44 1 4.8036 -6.1691 3.7276 45 1 3.3259 -4.3431 4.4579 46 1 2.0427 -3.0472 2.8172 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000493588921.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:00:13 Heat of formation + Delta-G solvation = 23.888388 kcal Electronic energy + Delta-G solvation = -28620.409660 eV Core-core repulsion = 24669.959105 eV Total energy + Delta-G solvation = -3950.450555 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.157 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -40.67731 -39.69291 -38.07742 -36.42035 -36.16253 -33.99994 -32.99785 -32.79133 -30.83433 -29.52169 -28.10741 -27.12187 -26.49873 -24.25809 -23.00389 -22.03236 -21.47340 -20.97939 -20.69550 -20.00847 -18.55160 -17.68326 -17.10562 -16.70927 -16.27223 -15.84864 -15.48446 -14.97918 -14.88052 -14.74786 -14.45129 -14.33735 -14.06045 -13.59233 -13.41296 -13.17606 -13.10002 -13.04749 -12.47610 -12.35219 -12.09638 -11.87503 -11.54375 -11.48784 -11.31681 -11.23315 -11.13923 -10.85850 -10.84121 -10.73800 -10.40097 -10.20612 -9.98948 -9.87407 -9.40059 -9.25040 -8.69708 -8.69370 -8.55742 -7.40034 -6.63452 -6.25704 -4.38166 1.24139 1.89590 2.34434 3.16187 3.16912 3.24998 3.30195 3.38016 3.61934 3.86286 3.90733 4.04863 4.27335 4.58578 4.60336 4.76724 4.94777 5.04445 5.05865 5.15887 5.26866 5.30780 5.33957 5.45664 5.54123 5.55230 5.58094 5.62822 5.80386 5.86997 5.94985 6.07533 6.19955 6.27654 6.44090 6.49424 6.54956 6.64064 6.70601 6.88398 7.00050 7.10275 7.18314 7.38290 7.44996 7.55779 7.63799 7.68539 7.85331 8.11579 8.17953 8.56256 8.70476 9.29663 10.77895 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.007768 B = 0.003647 C = 0.002721 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3603.622411 B = 7676.626006 C =10287.226797 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.890 5.890 2 C 0.066 3.934 3 Si 0.904 3.096 4 H -0.270 1.270 5 H -0.281 1.281 6 H -0.280 1.280 7 C -0.541 4.541 8 H 0.066 0.934 9 C 0.234 3.766 10 N -0.438 5.438 11 C 0.169 3.831 12 C -0.228 4.228 13 C 0.078 3.922 14 C -0.282 4.282 15 C 0.551 3.449 16 O -0.521 6.521 17 N -0.710 5.710 18 C 0.101 3.899 19 H 0.139 0.861 20 C -0.189 4.189 21 C -0.164 4.164 22 H 0.113 0.887 23 C 0.106 3.894 24 O -0.574 6.574 25 C -0.076 4.076 26 C -0.093 4.093 27 C -0.150 4.150 28 C -0.127 4.127 29 C -0.103 4.103 30 C 0.097 3.903 31 H 0.267 0.733 32 H 0.047 0.953 33 H 0.045 0.955 34 H 0.153 0.847 35 H 0.123 0.877 36 H 0.121 0.879 37 H 0.397 0.603 38 H 0.097 0.903 39 H 0.101 0.899 40 H 0.050 0.950 41 H 0.055 0.945 42 H 0.381 0.619 43 H 0.110 0.890 44 H 0.112 0.888 45 H 0.115 0.885 46 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.881 -15.183 -7.070 16.853 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.528 5.528 2 C -0.137 4.137 3 Si 0.731 3.269 4 H -0.195 1.195 5 H -0.207 1.207 6 H -0.206 1.206 7 C -0.579 4.579 8 H 0.084 0.916 9 C 0.115 3.885 10 N -0.112 5.112 11 C 0.032 3.968 12 C -0.234 4.234 13 C 0.057 3.943 14 C -0.303 4.303 15 C 0.343 3.657 16 O -0.398 6.398 17 N -0.361 5.361 18 C -0.006 4.006 19 H 0.156 0.844 20 C -0.227 4.227 21 C -0.184 4.184 22 H 0.131 0.869 23 C 0.028 3.972 24 O -0.380 6.380 25 C -0.080 4.080 26 C -0.112 4.112 27 C -0.169 4.169 28 C -0.147 4.147 29 C -0.123 4.123 30 C -0.010 4.010 31 H 0.077 0.923 32 H 0.065 0.935 33 H 0.063 0.937 34 H 0.171 0.829 35 H 0.141 0.859 36 H 0.139 0.861 37 H 0.231 0.769 38 H 0.115 0.885 39 H 0.119 0.881 40 H 0.068 0.932 41 H 0.073 0.927 42 H 0.228 0.772 43 H 0.128 0.872 44 H 0.130 0.870 45 H 0.133 0.867 46 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges 1.584 -14.730 -6.401 16.139 hybrid contribution -0.024 1.011 -0.547 1.150 sum 1.560 -13.719 -6.948 15.457 Atomic orbital electron populations 1.69933 1.06096 1.27549 1.49208 1.24943 0.94926 0.99515 0.94340 0.86337 0.80142 0.82601 0.77864 1.19469 1.20659 1.20604 1.21409 0.93793 0.89829 1.52907 0.91604 1.19740 0.87139 0.81967 0.99621 1.44533 1.35398 1.27667 1.03581 1.21706 0.91699 0.91938 0.91436 1.18554 1.09130 1.04550 0.91213 1.21652 0.97793 0.86590 0.88241 1.21659 0.93432 1.10121 1.05083 1.17228 0.88705 0.77849 0.81869 1.90996 1.71403 1.44051 1.33318 1.45468 1.04824 1.62173 1.23633 1.21563 0.81090 1.00384 0.97522 0.84361 1.23644 1.03084 0.92814 1.03208 1.22653 0.98715 1.01284 0.95710 0.86923 1.21677 0.93545 0.98832 0.83127 1.86439 1.45250 1.77690 1.28620 1.18888 0.99573 0.97459 0.92107 1.20213 0.99592 0.99300 0.92073 1.20685 1.01540 0.99587 0.95133 1.20602 0.98661 0.97131 0.98297 1.20168 1.01556 1.00779 0.89816 1.18197 0.97888 0.96116 0.88779 0.92326 0.93512 0.93666 0.82939 0.85932 0.86077 0.76921 0.88474 0.88056 0.93179 0.92655 0.77190 0.87200 0.87035 0.86683 0.86197 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.00 13.29 55.43 0.74 -24.26 16 2 C 0.07 1.80 5.46 -17.82 -0.10 1.70 16 3 Si 0.90 20.92 29.54 -169.99 -5.02 15.90 16 4 H -0.27 -6.25 7.11 56.52 0.40 -5.85 16 5 H -0.28 -6.40 7.11 56.52 0.40 -6.00 16 6 H -0.28 -6.41 7.11 56.52 0.40 -6.01 16 7 C -0.54 -14.70 9.39 -34.44 -0.32 -15.03 16 8 H 0.07 1.83 7.81 -52.49 -0.41 1.42 16 9 C 0.23 5.95 5.71 -5.19 -0.03 5.92 16 10 N -0.44 -10.09 2.73 -115.37 -0.31 -10.41 16 11 C 0.17 3.49 8.33 -16.45 -0.14 3.36 16 12 C -0.23 -4.27 4.63 -103.41 -0.48 -4.75 16 13 C 0.08 1.11 10.16 -37.30 -0.38 0.73 16 14 C -0.28 -3.57 9.81 -39.34 -0.39 -3.95 16 15 C 0.55 8.16 7.19 -15.02 -0.11 8.06 16 16 O -0.52 -10.01 11.92 5.11 0.06 -9.95 16 17 N -0.71 -8.18 5.56 -56.74 -0.32 -8.49 16 18 C 0.10 1.17 6.15 -67.94 -0.42 0.75 16 19 H 0.14 1.91 7.40 -51.93 -0.38 1.52 16 20 C -0.19 -1.77 10.10 -26.73 -0.27 -2.04 16 21 C -0.16 -1.65 5.98 -90.63 -0.54 -2.19 16 22 H 0.11 1.14 8.14 -51.93 -0.42 0.71 16 23 C 0.11 1.03 7.33 37.16 0.27 1.30 16 24 O -0.57 -5.63 13.66 -35.23 -0.48 -6.11 16 25 C -0.08 -1.52 6.36 -104.93 -0.67 -2.18 16 26 C -0.09 -1.60 10.09 -39.38 -0.40 -2.00 16 27 C -0.15 -2.42 10.03 -39.56 -0.40 -2.82 16 28 C -0.13 -2.19 10.01 -39.56 -0.40 -2.59 16 29 C -0.10 -2.10 9.97 -39.42 -0.39 -2.49 16 30 C 0.10 2.13 6.79 -83.95 -0.57 1.56 16 31 H 0.27 7.05 8.31 -40.82 -0.34 6.71 16 32 H 0.05 1.23 8.11 -51.93 -0.42 0.81 16 33 H 0.05 1.21 8.14 -51.93 -0.42 0.79 16 34 H 0.15 2.99 7.92 -52.49 -0.42 2.58 16 35 H 0.12 1.37 8.06 -52.49 -0.42 0.95 16 36 H 0.12 1.09 8.06 -52.48 -0.42 0.67 16 37 H 0.40 3.39 8.78 -40.82 -0.36 3.03 16 38 H 0.10 0.82 8.14 -51.93 -0.42 0.40 16 39 H 0.10 0.88 8.03 -51.93 -0.42 0.47 16 40 H 0.05 0.43 7.88 -51.93 -0.41 0.02 16 41 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 42 H 0.38 2.02 9.12 45.56 0.42 2.44 16 43 H 0.11 1.58 8.06 -52.49 -0.42 1.16 16 44 H 0.11 1.44 8.06 -52.49 -0.42 1.02 16 45 H 0.12 1.65 8.06 -52.49 -0.42 1.23 16 46 H 0.12 2.47 8.06 -52.48 -0.42 2.05 16 LS Contribution 395.77 15.07 5.96 5.96 Total: -1.00 -32.92 395.77 -10.85 -43.77 By element: Atomic # 1 Polarization: 16.00 SS G_CDS: -5.76 Total: 10.24 kcal Atomic # 6 Polarization: -10.94 SS G_CDS: -5.72 Total: -16.65 kcal Atomic # 7 Polarization: -43.27 SS G_CDS: 0.11 Total: -43.16 kcal Atomic # 8 Polarization: -15.64 SS G_CDS: -0.42 Total: -16.06 kcal Atomic # 14 Polarization: 20.92 SS G_CDS: -5.02 Total: 15.90 kcal Total LS contribution 5.96 Total: 5.96 kcal Total: -32.92 -10.85 -43.77 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000493588921.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 67.658 kcal (2) G-P(sol) polarization free energy of solvation -32.918 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 34.740 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.851 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.769 kcal (6) G-S(sol) free energy of system = (1) + (5) 23.888 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds