Wall clock time and date at job start Sat Apr 11 2020 06:00:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86808 * 120.00211 * 2 1 4 4 H 1.48503 * 109.46946 * 269.99817 * 3 2 1 5 5 H 1.48505 * 109.46870 * 29.99846 * 3 2 1 6 6 H 1.48496 * 109.47039 * 150.00020 * 3 2 1 7 7 C 1.37879 * 120.00073 * 179.97438 * 2 1 3 8 8 H 1.08005 * 120.00304 * 180.02562 * 7 2 1 9 9 C 1.50702 * 119.99545 * 0.02562 * 7 2 1 10 10 N 1.46504 * 109.46616 * 179.97438 * 9 7 2 11 11 C 1.35615 * 124.77850 * 265.30446 * 10 9 7 12 12 C 1.36661 * 109.69418 * 180.14931 * 11 10 9 13 13 C 1.46375 * 126.78488 * 179.87019 * 12 11 10 14 14 C 1.35453 * 120.00078 * 359.67902 * 13 12 11 15 15 C 1.41493 * 120.00029 * 180.02562 * 14 13 12 16 16 O 1.21788 * 120.00057 * 0.02562 * 15 14 13 17 17 N 1.34778 * 120.00218 * 179.97438 * 15 14 13 18 18 C 1.46501 * 120.00059 * 180.02562 * 17 15 14 19 19 H 1.08993 * 115.56173 * 9.31258 * 18 17 15 20 20 C 1.53003 * 117.49786 * 223.62457 * 18 17 15 21 21 C 1.52997 * 117.49532 * 155.00364 * 18 17 15 22 22 H 1.09004 * 117.52256 * 0.02562 * 21 18 17 23 23 C 1.52999 * 117.49613 * 214.97994 * 21 18 17 24 24 O 1.42903 * 109.47256 * 174.98992 * 23 21 18 25 25 C 1.47527 * 106.42935 * 359.59975 * 12 11 10 26 26 C 1.39241 * 133.96848 * 180.21397 * 25 12 11 27 27 C 1.37777 * 119.67657 * 180.02562 * 26 25 12 28 28 C 1.38746 * 120.29611 * 0.02562 * 27 26 25 29 29 C 1.37772 * 120.62777 * 359.96968 * 28 27 26 30 30 C 1.37992 * 124.78399 * 85.00160 * 10 9 7 31 31 H 0.96998 * 119.99647 * 0.02562 * 1 2 3 32 32 H 1.08996 * 109.47075 * 60.00617 * 9 7 2 33 33 H 1.08998 * 109.46921 * 299.99748 * 9 7 2 34 34 H 1.07996 * 125.15248 * 359.97438 * 11 10 9 35 35 H 1.08005 * 120.00091 * 179.68777 * 13 12 11 36 36 H 1.07991 * 119.99968 * 0.02562 * 14 13 12 37 37 H 0.97002 * 119.99713 * 0.02562 * 17 15 14 38 38 H 1.08996 * 117.50007 * 145.02235 * 20 18 17 39 39 H 1.09005 * 117.51379 * 359.97438 * 20 18 17 40 40 H 1.08997 * 109.47286 * 54.98552 * 23 21 18 41 41 H 1.09008 * 109.47201 * 294.98333 * 23 21 18 42 42 H 0.96700 * 114.00311 * 180.02562 * 24 23 21 43 43 H 1.08001 * 120.16309 * 0.02562 * 26 25 12 44 44 H 1.08000 * 119.84939 * 180.02562 * 27 26 25 45 45 H 1.07999 * 119.68188 * 179.97438 * 28 27 26 46 46 H 1.08003 * 120.03232 * 179.97438 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 2.4968 2.0464 -1.4001 5 1 1.4466 2.6527 0.7000 6 1 3.5467 1.4401 0.7000 7 6 2.0045 -1.1941 0.0005 8 1 3.0846 -1.1941 0.0010 9 6 1.2509 -2.4991 0.0005 10 7 2.2030 -3.6127 0.0005 11 6 2.6364 -4.2599 -1.1096 12 6 3.5135 -5.2460 -0.7549 13 6 4.2026 -6.1717 -1.6554 14 6 3.9894 -6.1019 -2.9912 15 6 4.6551 -6.9971 -3.8615 16 8 5.4195 -7.8306 -3.4096 17 7 4.4426 -6.9281 -5.1907 18 6 5.1315 -7.8553 -6.0918 19 1 5.6722 -8.6679 -5.6068 20 6 5.7269 -7.2790 -7.3780 21 6 4.4715 -8.1514 -7.4400 22 1 3.5250 -7.6562 -7.6570 23 6 4.6212 -9.5656 -8.0042 24 8 3.8483 -9.6857 -9.2001 25 6 3.6335 -5.1890 0.7144 26 6 4.3615 -5.9146 1.6537 27 6 4.2494 -5.6043 2.9914 28 6 3.4156 -4.5749 3.4037 29 6 2.6897 -3.8489 2.4849 30 6 2.7896 -4.1468 1.1296 31 1 -0.4849 0.8401 -0.0004 32 1 0.6247 -2.5571 -0.8897 33 1 0.6240 -2.5566 0.8903 34 1 2.3321 -4.0324 -2.1206 35 1 4.8810 -6.9104 -1.2546 36 1 3.3113 -5.3631 -3.3919 37 1 3.8335 -6.2644 -5.5506 38 1 6.6594 -7.7126 -7.7392 39 1 5.6059 -6.2101 -7.5542 40 1 4.2684 -10.2892 -7.2694 41 1 5.6704 -9.7581 -8.2289 42 1 3.8958 -10.5587 -9.6133 43 1 5.0109 -6.7166 1.3353 44 1 4.8131 -6.1650 3.7223 45 1 3.3349 -4.3404 4.4548 46 1 2.0432 -3.0498 2.8165 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000493588922.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:00:15 Heat of formation + Delta-G solvation = 6.208813 kcal Electronic energy + Delta-G solvation = -27251.325656 eV Core-core repulsion = 23300.108457 eV Total energy + Delta-G solvation = -3951.217199 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.157 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -40.86784 -39.89664 -38.19410 -36.67036 -36.33203 -34.34374 -33.12961 -32.89701 -31.01682 -29.74138 -28.35441 -27.32165 -26.72455 -24.39277 -23.12043 -22.30175 -21.64218 -21.11834 -20.75754 -20.15763 -18.47405 -17.81918 -17.37526 -16.88486 -16.43969 -16.03796 -15.72138 -15.15457 -15.10643 -14.83052 -14.63707 -14.55887 -14.13398 -14.11218 -13.53179 -13.32615 -13.25402 -13.05416 -12.64387 -12.50740 -12.38410 -11.72961 -11.65845 -11.63731 -11.44719 -11.37388 -11.13857 -11.01734 -10.99758 -10.90753 -10.54884 -10.36147 -10.25862 -10.13349 -9.80215 -9.54565 -8.91829 -8.80097 -8.67953 -7.75588 -6.92419 -6.39372 -4.51138 1.03718 1.70243 2.15054 3.00787 3.10886 3.11714 3.18938 3.23148 3.48103 3.59241 3.87117 3.90865 4.17147 4.38200 4.47312 4.63034 4.80146 4.91542 4.92756 4.97815 5.06504 5.14851 5.18792 5.27571 5.36731 5.40879 5.47192 5.53297 5.66208 5.71233 5.81698 5.84806 6.00066 6.09214 6.19786 6.35431 6.40647 6.47753 6.59106 6.76587 6.80133 6.92738 7.00315 7.15811 7.23630 7.29678 7.50694 7.55100 7.69242 7.81353 7.86936 8.35642 8.56177 9.17690 10.65773 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.009965 B = 0.002302 C = 0.001961 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2809.076165 B =12160.152592 C =14274.306036 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.889 5.889 2 C 0.068 3.932 3 Si 0.905 3.095 4 H -0.276 1.276 5 H -0.282 1.282 6 H -0.271 1.271 7 C -0.546 4.546 8 H 0.066 0.934 9 C 0.230 3.770 10 N -0.435 5.435 11 C 0.132 3.868 12 C -0.227 4.227 13 C 0.088 3.912 14 C -0.300 4.300 15 C 0.568 3.432 16 O -0.563 6.563 17 N -0.708 5.708 18 C 0.099 3.901 19 H 0.138 0.862 20 C -0.187 4.187 21 C -0.166 4.166 22 H 0.115 0.885 23 C 0.108 3.892 24 O -0.573 6.573 25 C -0.085 4.085 26 C -0.088 4.088 27 C -0.145 4.145 28 C -0.119 4.119 29 C -0.102 4.102 30 C 0.096 3.904 31 H 0.269 0.731 32 H 0.051 0.949 33 H 0.049 0.951 34 H 0.170 0.830 35 H 0.128 0.872 36 H 0.120 0.880 37 H 0.402 0.598 38 H 0.102 0.898 39 H 0.100 0.900 40 H 0.053 0.947 41 H 0.050 0.950 42 H 0.381 0.619 43 H 0.116 0.884 44 H 0.116 0.884 45 H 0.119 0.881 46 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.929 -14.856 -8.879 18.643 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.526 5.526 2 C -0.136 4.136 3 Si 0.732 3.268 4 H -0.202 1.202 5 H -0.208 1.208 6 H -0.195 1.195 7 C -0.584 4.584 8 H 0.084 0.916 9 C 0.112 3.888 10 N -0.109 5.109 11 C -0.006 4.006 12 C -0.234 4.234 13 C 0.067 3.933 14 C -0.322 4.322 15 C 0.362 3.638 16 O -0.444 6.444 17 N -0.357 5.357 18 C -0.008 4.008 19 H 0.155 0.845 20 C -0.226 4.226 21 C -0.186 4.186 22 H 0.133 0.867 23 C 0.030 3.970 24 O -0.378 6.378 25 C -0.088 4.088 26 C -0.107 4.107 27 C -0.164 4.164 28 C -0.139 4.139 29 C -0.122 4.122 30 C -0.010 4.010 31 H 0.079 0.921 32 H 0.069 0.931 33 H 0.067 0.933 34 H 0.187 0.813 35 H 0.146 0.854 36 H 0.138 0.862 37 H 0.237 0.763 38 H 0.120 0.880 39 H 0.118 0.882 40 H 0.071 0.929 41 H 0.068 0.932 42 H 0.228 0.772 43 H 0.135 0.865 44 H 0.134 0.866 45 H 0.137 0.863 46 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges 6.872 -14.364 -8.342 17.976 hybrid contribution 0.084 0.979 -0.502 1.103 sum 6.956 -13.385 -8.844 17.486 Atomic orbital electron populations 1.69911 1.06098 1.27912 1.48654 1.24945 0.94963 0.99611 0.94123 0.86362 0.79828 0.82084 0.78534 1.20207 1.20776 1.19535 1.21314 0.93783 0.89630 1.53651 0.91562 1.19873 0.87037 0.81915 0.99987 1.44758 1.35073 1.27423 1.03615 1.22259 0.94520 0.91613 0.92188 1.18864 1.08987 1.04261 0.91288 1.21606 0.89384 0.90776 0.91490 1.21336 1.10277 1.06411 0.94209 1.17042 0.81253 0.83850 0.81609 1.90785 1.38345 1.38892 1.76429 1.45314 1.47507 1.36506 1.06402 1.21561 0.98639 0.96172 0.84415 0.84463 1.23665 0.97074 1.00237 1.01619 1.22692 0.98678 0.96716 1.00500 0.86720 1.21656 0.94260 0.94827 0.86242 1.86475 1.72173 1.38040 1.41142 1.19013 0.99718 0.97748 0.92362 1.20322 0.99086 0.99241 0.92016 1.20789 1.01077 0.99295 0.95231 1.20703 0.97930 0.96662 0.98596 1.20212 1.01546 1.00821 0.89611 1.18286 0.97709 0.96075 0.88971 0.92094 0.93112 0.93300 0.81328 0.85443 0.86167 0.76293 0.87959 0.88189 0.92933 0.93197 0.77242 0.86549 0.86570 0.86270 0.85805 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -23.75 13.29 55.43 0.74 -23.01 16 2 C 0.07 1.75 5.46 -17.82 -0.10 1.65 16 3 Si 0.91 20.14 29.54 -169.99 -5.02 15.12 16 4 H -0.28 -6.08 7.11 56.52 0.40 -5.68 16 5 H -0.28 -6.21 7.11 56.52 0.40 -5.81 16 6 H -0.27 -6.05 7.11 56.52 0.40 -5.65 16 7 C -0.55 -13.91 9.39 -34.44 -0.32 -14.23 16 8 H 0.07 1.74 7.81 -52.48 -0.41 1.33 16 9 C 0.23 5.29 5.71 -5.19 -0.03 5.26 16 10 N -0.44 -8.87 2.73 -115.37 -0.31 -9.19 16 11 C 0.13 2.33 10.65 -16.45 -0.18 2.15 16 12 C -0.23 -3.87 6.24 -103.41 -0.65 -4.52 16 13 C 0.09 1.34 9.68 -37.30 -0.36 0.98 16 14 C -0.30 -4.12 9.32 -39.34 -0.37 -4.49 16 15 C 0.57 8.07 7.56 -15.02 -0.11 7.96 16 16 O -0.56 -9.78 15.67 5.11 0.08 -9.70 16 17 N -0.71 -7.80 5.56 -56.73 -0.32 -8.11 16 18 C 0.10 0.99 6.15 -67.93 -0.42 0.57 16 19 H 0.14 1.50 7.40 -51.93 -0.38 1.12 16 20 C -0.19 -1.53 10.10 -26.73 -0.27 -1.80 16 21 C -0.17 -1.43 5.98 -90.62 -0.54 -1.97 16 22 H 0.11 1.05 8.14 -51.93 -0.42 0.62 16 23 C 0.11 0.80 7.33 37.16 0.27 1.07 16 24 O -0.57 -4.58 13.66 -35.23 -0.48 -5.06 16 25 C -0.08 -1.54 6.36 -104.93 -0.67 -2.21 16 26 C -0.09 -1.39 10.09 -39.38 -0.40 -1.79 16 27 C -0.14 -2.11 10.03 -39.56 -0.40 -2.51 16 28 C -0.12 -1.84 10.01 -39.56 -0.40 -2.24 16 29 C -0.10 -1.87 9.97 -39.42 -0.39 -2.26 16 30 C 0.10 1.89 6.79 -83.96 -0.57 1.32 16 31 H 0.27 6.83 8.31 -40.82 -0.34 6.49 16 32 H 0.05 1.18 8.11 -51.93 -0.42 0.76 16 33 H 0.05 1.18 8.14 -51.93 -0.42 0.76 16 34 H 0.17 2.50 7.19 -52.49 -0.38 2.12 16 35 H 0.13 1.93 7.45 -52.48 -0.39 1.54 16 36 H 0.12 1.42 6.88 -52.49 -0.36 1.06 16 37 H 0.40 3.52 8.78 -40.82 -0.36 3.16 16 38 H 0.10 0.72 8.03 -51.93 -0.42 0.31 16 39 H 0.10 0.79 8.14 -51.93 -0.42 0.37 16 40 H 0.05 0.36 8.14 -51.93 -0.42 -0.06 16 41 H 0.05 0.30 7.88 -51.92 -0.41 -0.11 16 42 H 0.38 1.23 9.12 45.56 0.42 1.65 16 43 H 0.12 1.58 8.06 -52.49 -0.42 1.16 16 44 H 0.12 1.35 8.06 -52.49 -0.42 0.92 16 45 H 0.12 1.50 8.06 -52.49 -0.42 1.08 16 46 H 0.12 2.29 8.06 -52.48 -0.42 1.86 16 LS Contribution 400.32 15.07 6.03 6.03 Total: -1.00 -31.18 400.32 -10.80 -41.98 By element: Atomic # 1 Polarization: 14.64 SS G_CDS: -5.63 Total: 9.00 kcal Atomic # 6 Polarization: -11.16 SS G_CDS: -5.89 Total: -17.05 kcal Atomic # 7 Polarization: -40.42 SS G_CDS: 0.11 Total: -40.32 kcal Atomic # 8 Polarization: -14.36 SS G_CDS: -0.40 Total: -14.76 kcal Atomic # 14 Polarization: 20.14 SS G_CDS: -5.02 Total: 15.12 kcal Total LS contribution 6.03 Total: 6.03 kcal Total: -31.18 -10.80 -41.98 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000493588922.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.188 kcal (2) G-P(sol) polarization free energy of solvation -31.176 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 17.013 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.804 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.980 kcal (6) G-S(sol) free energy of system = (1) + (5) 6.209 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds