Wall clock time and date at job start Sat Apr 11 2020 06:00:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86808 * 120.00211 * 2 1 4 4 H 1.48503 * 109.46946 * 269.99817 * 3 2 1 5 5 H 1.48505 * 109.46870 * 29.99846 * 3 2 1 6 6 H 1.48496 * 109.47039 * 150.00020 * 3 2 1 7 7 C 1.37879 * 120.00073 * 179.97438 * 2 1 3 8 8 H 1.08005 * 120.00304 * 180.02562 * 7 2 1 9 9 C 1.50702 * 119.99545 * 0.02562 * 7 2 1 10 10 N 1.46504 * 109.46616 * 179.97438 * 9 7 2 11 11 C 1.35615 * 124.77850 * 265.30446 * 10 9 7 12 12 C 1.36661 * 109.69418 * 180.14931 * 11 10 9 13 13 C 1.46375 * 126.78488 * 179.87019 * 12 11 10 14 14 C 1.35453 * 120.00078 * 359.67902 * 13 12 11 15 15 C 1.41493 * 120.00029 * 180.02562 * 14 13 12 16 16 O 1.21788 * 120.00057 * 0.02562 * 15 14 13 17 17 N 1.34778 * 120.00218 * 179.97438 * 15 14 13 18 18 C 1.46501 * 120.00059 * 180.02562 * 17 15 14 19 19 H 1.08993 * 115.56173 * 9.31258 * 18 17 15 20 20 C 1.53003 * 117.49786 * 223.62457 * 18 17 15 21 21 C 1.52997 * 117.49532 * 155.00364 * 18 17 15 22 22 H 1.09004 * 117.52256 * 0.02562 * 21 18 17 23 23 C 1.52999 * 117.49613 * 214.97994 * 21 18 17 24 24 O 1.42903 * 109.47256 * 174.98992 * 23 21 18 25 25 C 1.47527 * 106.42935 * 359.59975 * 12 11 10 26 26 C 1.39241 * 133.96848 * 180.21397 * 25 12 11 27 27 C 1.37777 * 119.67657 * 180.02562 * 26 25 12 28 28 C 1.38746 * 120.29611 * 0.02562 * 27 26 25 29 29 C 1.37772 * 120.62777 * 359.96968 * 28 27 26 30 30 C 1.37992 * 124.78399 * 85.00160 * 10 9 7 31 31 H 0.96998 * 119.99647 * 0.02562 * 1 2 3 32 32 H 1.08996 * 109.47075 * 60.00617 * 9 7 2 33 33 H 1.08998 * 109.46921 * 299.99748 * 9 7 2 34 34 H 1.07996 * 125.15248 * 359.97438 * 11 10 9 35 35 H 1.08005 * 120.00091 * 179.68777 * 13 12 11 36 36 H 1.07991 * 119.99968 * 0.02562 * 14 13 12 37 37 H 0.97002 * 119.99713 * 0.02562 * 17 15 14 38 38 H 1.08996 * 117.50007 * 145.02235 * 20 18 17 39 39 H 1.09005 * 117.51379 * 359.97438 * 20 18 17 40 40 H 1.08997 * 109.47286 * 54.98552 * 23 21 18 41 41 H 1.09008 * 109.47201 * 294.98333 * 23 21 18 42 42 H 0.96700 * 114.00311 * 180.02562 * 24 23 21 43 43 H 1.08001 * 120.16309 * 0.02562 * 26 25 12 44 44 H 1.08000 * 119.84939 * 180.02562 * 27 26 25 45 45 H 1.07999 * 119.68188 * 179.97438 * 28 27 26 46 46 H 1.08003 * 120.03232 * 179.97438 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 2.4968 2.0464 -1.4001 5 1 1.4466 2.6527 0.7000 6 1 3.5467 1.4401 0.7000 7 6 2.0045 -1.1941 0.0005 8 1 3.0846 -1.1941 0.0010 9 6 1.2509 -2.4991 0.0005 10 7 2.2030 -3.6127 0.0005 11 6 2.6364 -4.2599 -1.1096 12 6 3.5135 -5.2460 -0.7549 13 6 4.2026 -6.1717 -1.6554 14 6 3.9894 -6.1019 -2.9912 15 6 4.6551 -6.9971 -3.8615 16 8 5.4195 -7.8306 -3.4096 17 7 4.4426 -6.9281 -5.1907 18 6 5.1315 -7.8553 -6.0918 19 1 5.6722 -8.6679 -5.6068 20 6 5.7269 -7.2790 -7.3780 21 6 4.4715 -8.1514 -7.4400 22 1 3.5250 -7.6562 -7.6570 23 6 4.6212 -9.5656 -8.0042 24 8 3.8483 -9.6857 -9.2001 25 6 3.6335 -5.1890 0.7144 26 6 4.3615 -5.9146 1.6537 27 6 4.2494 -5.6043 2.9914 28 6 3.4156 -4.5749 3.4037 29 6 2.6897 -3.8489 2.4849 30 6 2.7896 -4.1468 1.1296 31 1 -0.4849 0.8401 -0.0004 32 1 0.6247 -2.5571 -0.8897 33 1 0.6240 -2.5566 0.8903 34 1 2.3321 -4.0324 -2.1206 35 1 4.8810 -6.9104 -1.2546 36 1 3.3113 -5.3631 -3.3919 37 1 3.8335 -6.2644 -5.5506 38 1 6.6594 -7.7126 -7.7392 39 1 5.6059 -6.2101 -7.5542 40 1 4.2684 -10.2892 -7.2694 41 1 5.6704 -9.7581 -8.2289 42 1 3.8958 -10.5587 -9.6133 43 1 5.0109 -6.7166 1.3353 44 1 4.8131 -6.1650 3.7223 45 1 3.3349 -4.3404 4.4548 46 1 2.0432 -3.0498 2.8165 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000493588922.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:00:14 Heat of formation + Delta-G solvation = -12.568409 kcal Electronic energy + Delta-G solvation = -27252.139898 eV Core-core repulsion = 23300.108457 eV Total energy + Delta-G solvation = -3952.031441 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.157 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -42.23184 -40.92923 -38.98071 -37.97941 -37.00495 -35.86318 -34.75205 -33.95760 -32.37301 -31.18040 -29.70909 -28.59188 -27.65946 -25.82304 -24.55565 -23.53603 -22.61116 -22.12519 -21.85993 -21.26172 -19.68668 -18.85825 -18.50867 -18.46173 -17.53263 -17.37776 -16.86889 -16.42524 -16.28746 -15.83483 -15.79259 -15.66410 -15.42762 -15.15275 -14.86582 -14.73216 -14.34432 -14.23074 -13.95622 -13.74982 -13.42536 -13.29801 -13.16963 -12.74546 -12.72671 -12.52200 -12.44990 -12.31239 -12.29931 -12.09627 -11.87580 -11.69105 -11.63025 -11.17818 -11.04690 -10.77451 -10.66239 -10.06516 -9.70738 -9.10765 -8.47785 -8.14492 -6.54725 -0.19011 0.42470 0.85135 1.34921 1.36767 1.47144 1.86467 2.09866 2.17763 2.32990 2.51993 2.89591 2.93642 3.08369 3.31702 3.75565 3.76564 3.83217 3.90964 3.95711 4.13929 4.20818 4.28084 4.32126 4.35768 4.38007 4.50022 4.59680 4.70109 4.72085 4.74091 4.82651 4.85384 4.89744 4.93905 4.98317 5.12581 5.18739 5.36012 5.49639 5.50896 5.58041 5.67532 5.73753 5.77132 5.85430 6.01579 6.31834 6.41444 6.58949 6.61699 6.90192 7.17788 7.29240 8.68729 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.009965 B = 0.002302 C = 0.001961 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2809.076165 B =12160.152592 C =14274.306036 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.917 5.917 2 C 0.024 3.976 3 Si 0.966 3.034 4 H -0.268 1.268 5 H -0.276 1.276 6 H -0.273 1.273 7 C -0.555 4.555 8 H 0.052 0.948 9 C 0.247 3.753 10 N -0.454 5.454 11 C 0.110 3.890 12 C -0.215 4.215 13 C 0.074 3.926 14 C -0.278 4.278 15 C 0.563 3.437 16 O -0.597 6.597 17 N -0.695 5.695 18 C 0.078 3.922 19 H 0.126 0.874 20 C -0.174 4.174 21 C -0.160 4.160 22 H 0.110 0.890 23 C 0.106 3.894 24 O -0.593 6.593 25 C -0.106 4.106 26 C -0.091 4.091 27 C -0.138 4.138 28 C -0.108 4.108 29 C -0.134 4.134 30 C 0.064 3.936 31 H 0.273 0.727 32 H 0.043 0.957 33 H 0.026 0.974 34 H 0.190 0.810 35 H 0.128 0.872 36 H 0.141 0.859 37 H 0.415 0.585 38 H 0.116 0.884 39 H 0.105 0.895 40 H 0.055 0.945 41 H 0.066 0.934 42 H 0.400 0.600 43 H 0.140 0.860 44 H 0.156 0.844 45 H 0.150 0.850 46 H 0.107 0.893 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.551 -15.711 -9.733 20.364 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.555 5.555 2 C -0.177 4.177 3 Si 0.790 3.210 4 H -0.193 1.193 5 H -0.201 1.201 6 H -0.198 1.198 7 C -0.593 4.593 8 H 0.070 0.930 9 C 0.128 3.872 10 N -0.130 5.130 11 C -0.025 4.025 12 C -0.222 4.222 13 C 0.053 3.947 14 C -0.300 4.300 15 C 0.358 3.642 16 O -0.481 6.481 17 N -0.344 5.344 18 C -0.029 4.029 19 H 0.144 0.856 20 C -0.212 4.212 21 C -0.179 4.179 22 H 0.128 0.872 23 C 0.029 3.971 24 O -0.402 6.402 25 C -0.109 4.109 26 C -0.109 4.109 27 C -0.157 4.157 28 C -0.127 4.127 29 C -0.155 4.155 30 C -0.041 4.041 31 H 0.082 0.918 32 H 0.061 0.939 33 H 0.044 0.956 34 H 0.207 0.793 35 H 0.146 0.854 36 H 0.159 0.841 37 H 0.251 0.749 38 H 0.134 0.866 39 H 0.123 0.877 40 H 0.073 0.927 41 H 0.084 0.916 42 H 0.250 0.750 43 H 0.158 0.842 44 H 0.174 0.826 45 H 0.167 0.833 46 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges 8.494 -15.248 -9.255 19.756 hybrid contribution -0.359 1.079 -0.302 1.177 sum 8.134 -14.169 -9.557 18.928 Atomic orbital electron populations 1.69995 1.07274 1.28808 1.49422 1.25700 0.95713 1.02625 0.93702 0.85433 0.78394 0.78394 0.78797 1.19323 1.20076 1.19813 1.21469 0.93215 0.91070 1.53518 0.92953 1.19376 0.87139 0.82363 0.98334 1.44539 1.35886 1.27702 1.04832 1.22641 0.95289 0.92021 0.92528 1.19011 1.08118 1.03773 0.91278 1.21518 0.90271 0.91115 0.91823 1.21562 1.09008 1.05675 0.93742 1.17123 0.80970 0.83500 0.82640 1.90770 1.39877 1.40256 1.77228 1.45211 1.47046 1.36529 1.05601 1.21623 0.99997 0.96432 0.84802 0.85606 1.23742 0.97553 1.00606 0.99326 1.22707 0.98666 0.97672 0.98877 0.87229 1.21688 0.95175 0.94002 0.86268 1.86415 1.72431 1.39955 1.41355 1.19364 1.00248 0.97999 0.93329 1.20719 0.98635 0.99273 0.92285 1.21243 1.00278 0.98629 0.95543 1.21100 0.96383 0.95713 0.99531 1.20347 1.03189 1.01933 0.89993 1.18698 0.98794 0.97200 0.89396 0.91811 0.93920 0.95571 0.79267 0.85447 0.84103 0.74871 0.86551 0.87688 0.92657 0.91609 0.74998 0.84174 0.82627 0.83278 0.87486 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -50.07 13.29 21.45 0.28 -49.79 16 2 C 0.02 1.26 5.46 84.66 0.46 1.72 16 3 Si 0.97 41.63 29.54 68.60 2.03 43.65 16 4 H -0.27 -11.14 7.11 99.48 0.71 -10.43 16 5 H -0.28 -11.51 7.11 99.48 0.71 -10.81 16 6 H -0.27 -11.80 7.11 99.48 0.71 -11.09 16 7 C -0.55 -29.27 9.39 25.60 0.24 -29.03 16 8 H 0.05 2.85 7.81 -2.91 -0.02 2.83 16 9 C 0.25 12.01 5.71 85.63 0.49 12.49 16 10 N -0.45 -19.36 2.73 -518.93 -1.42 -20.78 16 11 C 0.11 3.96 10.65 83.74 0.89 4.85 16 12 C -0.21 -7.34 6.24 -19.08 -0.12 -7.45 16 13 C 0.07 2.19 9.68 23.75 0.23 2.42 16 14 C -0.28 -7.29 9.32 22.43 0.21 -7.08 16 15 C 0.56 15.40 7.56 85.04 0.64 16.04 16 16 O -0.60 -20.43 15.67 -4.63 -0.07 -20.50 16 17 N -0.69 -14.28 5.56 -451.59 -2.51 -16.79 16 18 C 0.08 1.44 6.15 44.99 0.28 1.72 16 19 H 0.13 2.66 7.40 -2.39 -0.02 2.64 16 20 C -0.17 -2.46 10.10 30.60 0.31 -2.15 16 21 C -0.16 -2.45 5.98 -10.79 -0.06 -2.52 16 22 H 0.11 1.82 8.14 -2.38 -0.02 1.80 16 23 C 0.11 1.37 7.33 71.98 0.53 1.89 16 24 O -0.59 -8.36 13.66 -148.98 -2.04 -10.40 16 25 C -0.11 -3.85 6.36 -20.07 -0.13 -3.97 16 26 C -0.09 -2.73 10.09 22.40 0.23 -2.50 16 27 C -0.14 -3.68 10.03 22.28 0.22 -3.46 16 28 C -0.11 -3.20 10.01 22.28 0.22 -2.98 16 29 C -0.13 -5.08 9.97 22.37 0.22 -4.86 16 30 C 0.06 2.64 6.79 38.91 0.26 2.90 16 31 H 0.27 14.00 8.31 -92.71 -0.77 13.23 16 32 H 0.04 2.10 8.11 -2.39 -0.02 2.08 16 33 H 0.03 1.36 8.14 -2.39 -0.02 1.34 16 34 H 0.19 5.62 7.19 -2.91 -0.02 5.60 16 35 H 0.13 3.79 7.45 -2.91 -0.02 3.77 16 36 H 0.14 3.06 6.88 -2.91 -0.02 3.04 16 37 H 0.41 6.45 8.78 -92.71 -0.81 5.64 16 38 H 0.12 1.34 8.03 -2.39 -0.02 1.32 16 39 H 0.10 1.41 8.14 -2.38 -0.02 1.39 16 40 H 0.06 0.67 8.14 -2.39 -0.02 0.65 16 41 H 0.07 0.63 7.88 -2.38 -0.02 0.62 16 42 H 0.40 1.83 9.12 -74.06 -0.68 1.16 16 43 H 0.14 3.47 8.06 -2.91 -0.02 3.45 16 44 H 0.16 2.91 8.06 -2.91 -0.02 2.89 16 45 H 0.15 3.41 8.06 -2.91 -0.02 3.38 16 46 H 0.11 4.26 8.06 -2.91 -0.02 4.23 16 Total: -1.00 -68.78 400.32 0.93 -67.84 By element: Atomic # 1 Polarization: 29.19 SS G_CDS: -0.47 Total: 28.72 kcal Atomic # 6 Polarization: -27.09 SS G_CDS: 5.13 Total: -21.96 kcal Atomic # 7 Polarization: -83.72 SS G_CDS: -3.64 Total: -87.36 kcal Atomic # 8 Polarization: -28.79 SS G_CDS: -2.11 Total: -30.90 kcal Atomic # 14 Polarization: 41.63 SS G_CDS: 2.03 Total: 43.65 kcal Total: -68.78 0.93 -67.84 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000493588922.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.275 kcal (2) G-P(sol) polarization free energy of solvation -68.777 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.502 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.934 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.843 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.568 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds