Wall clock time and date at job start Sat Apr 11 2020 06:00:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31506 * 1 3 3 Si 1.86802 * 119.99960 * 2 1 4 4 H 1.48498 * 109.47356 * 239.99866 * 3 2 1 5 5 H 1.48493 * 109.47204 * 0.02562 * 3 2 1 6 6 H 1.48501 * 109.47295 * 119.99968 * 3 2 1 7 7 C 1.37876 * 120.00109 * 180.02562 * 2 1 3 8 8 H 1.07998 * 120.00091 * 180.02562 * 7 2 1 9 9 C 1.50705 * 119.99950 * 359.97438 * 7 2 1 10 10 O 1.42896 * 110.64002 * 56.86049 * 9 7 2 11 11 C 1.55154 * 110.71862 * 180.02562 * 9 7 2 12 12 C 1.54909 * 101.58258 * 154.04325 * 11 9 7 13 13 N 1.47429 * 104.83130 * 322.99093 * 12 11 9 14 14 C 1.34770 * 125.65186 * 204.09046 * 13 12 11 15 15 O 1.21586 * 120.00595 * 180.02562 * 14 13 12 16 16 N 1.34786 * 119.99746 * 0.02621 * 14 13 12 17 17 C 1.46501 * 119.99597 * 180.02562 * 16 14 13 18 18 C 1.50697 * 109.46526 * 179.97438 * 17 16 14 19 19 C 1.36130 * 120.17534 * 259.99558 * 18 17 16 20 20 C 1.39329 * 120.99258 * 179.97438 * 19 18 17 21 21 C 1.36125 * 120.98923 * 359.97438 * 20 19 18 22 22 C 1.40501 * 119.65263 * 0.02562 * 21 20 19 23 23 C 1.40557 * 121.28769 * 179.97438 * 22 21 20 24 24 C 1.36081 * 119.65010 * 180.02562 * 23 22 21 25 25 C 1.39382 * 120.99895 * 359.97438 * 24 23 22 26 26 C 1.36095 * 120.99034 * 0.04015 * 25 24 23 27 27 C 1.40507 * 120.17539 * 79.97890 * 18 17 16 28 28 C 1.47025 * 108.70282 * 24.35278 * 13 12 11 29 29 H 0.97004 * 119.99974 * 359.97438 * 1 2 3 30 30 H 0.96700 * 113.99824 * 303.14023 * 10 9 7 31 31 H 1.09007 * 111.00549 * 35.96968 * 11 9 7 32 32 H 1.09003 * 111.03807 * 272.13303 * 11 9 7 33 33 H 1.08995 * 110.37079 * 204.15657 * 12 11 9 34 34 H 1.09000 * 110.36939 * 81.82564 * 12 11 9 35 35 H 0.96992 * 119.99828 * 359.97438 * 16 14 13 36 36 H 1.08997 * 109.47447 * 59.99918 * 17 16 14 37 37 H 1.09001 * 109.47381 * 299.99318 * 17 16 14 38 38 H 1.08000 * 119.50276 * 0.02562 * 19 18 17 39 39 H 1.07999 * 119.50947 * 180.02562 * 20 19 18 40 40 H 1.07998 * 120.17668 * 179.72489 * 21 20 19 41 41 H 1.07995 * 120.17070 * 0.02562 * 23 22 21 42 42 H 1.08000 * 119.50492 * 180.02562 * 24 23 22 43 43 H 1.08004 * 119.50792 * 180.02562 * 25 24 23 44 44 H 1.08000 * 120.16947 * 179.97438 * 26 25 24 45 45 H 1.09001 * 109.88421 * 118.12998 * 28 13 12 46 46 H 1.08997 * 109.88279 * 239.30125 * 28 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1028 1.6965 -1.2124 5 1 1.2841 2.7464 0.0006 6 1 3.1028 1.6965 1.2125 7 6 2.0045 -1.1940 -0.0005 8 1 3.0844 -1.1940 -0.0001 9 6 1.2510 -2.4992 -0.0005 10 8 0.3656 -2.5696 -1.1199 11 6 2.2333 -3.7001 -0.0005 12 6 1.3741 -4.8048 0.6637 13 7 0.5905 -4.1033 1.6968 14 6 0.0655 -4.6673 2.8025 15 8 -0.5663 -3.9892 3.5896 16 7 0.2408 -5.9831 3.0359 17 6 -0.3304 -6.5963 4.2376 18 6 0.0064 -8.0650 4.2605 19 6 -0.9162 -8.9848 3.8656 20 6 -0.6228 -10.3468 3.8794 21 6 0.5951 -10.7973 4.2877 22 6 1.5731 -9.8778 4.7026 23 6 2.8416 -10.3050 5.1313 24 6 3.7636 -9.3855 5.5265 25 6 3.4702 -8.0230 5.5127 26 6 2.2527 -7.5725 5.1043 27 6 1.2744 -8.4922 4.6892 28 6 0.4713 -2.6877 1.3180 29 1 -0.4850 0.8401 0.0004 30 1 -0.2691 -1.8415 -1.1659 31 1 3.1182 -3.4811 0.5972 32 1 2.5104 -3.9790 -1.0172 33 1 2.0138 -5.5598 1.1204 34 1 0.7105 -5.2620 -0.0703 35 1 0.7444 -6.5242 2.4079 36 1 -1.4133 -6.4723 4.2291 37 1 0.0836 -6.1144 5.1233 38 1 -1.8899 -8.6538 3.5358 39 1 -1.3726 -11.0557 3.5606 40 1 0.8069 -11.8563 4.2973 41 1 3.0833 -11.3575 5.1469 42 1 4.7378 -9.7164 5.8551 43 1 4.2202 -7.3141 5.8311 44 1 2.0394 -6.5138 5.0993 45 1 -0.5776 -2.4304 1.1706 46 1 0.9039 -2.0581 2.0955 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000591937374.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:00:27 Heat of formation + Delta-G solvation = -31.220240 kcal Electronic energy + Delta-G solvation = -29017.995522 eV Core-core repulsion = 25065.155277 eV Total energy + Delta-G solvation = -3952.840245 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.157 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -40.78971 -39.55820 -37.49682 -36.79027 -34.95260 -34.26207 -32.49413 -32.14916 -30.52861 -30.19646 -29.52840 -27.83147 -26.30409 -24.64694 -23.47890 -23.19687 -22.55048 -20.97110 -19.69132 -19.44448 -17.83397 -17.64808 -17.17250 -16.94469 -16.42699 -15.84952 -15.33691 -15.02321 -14.72901 -14.56979 -14.33976 -14.02906 -13.84978 -13.67941 -13.47737 -13.21578 -12.94940 -12.86193 -12.80387 -12.45135 -12.12108 -11.98813 -11.62673 -11.56227 -11.42682 -11.16229 -11.03706 -10.92174 -10.80229 -10.64119 -10.51339 -10.19192 -10.14385 -9.61388 -9.32766 -8.87258 -8.82355 -8.65453 -8.31230 -8.10997 -7.75338 -6.27971 -4.36572 0.25842 0.79142 1.76412 2.73126 3.20857 3.25403 3.29027 3.31286 3.73433 3.91306 4.27065 4.29245 4.52008 4.54260 4.59826 4.69821 4.82567 4.91273 4.99550 5.11406 5.14436 5.25295 5.38782 5.40533 5.50010 5.68963 5.72603 5.75846 5.83509 5.91968 5.98255 6.02247 6.04518 6.11638 6.21527 6.31709 6.44488 6.52008 6.59020 6.70965 6.73797 6.78015 6.88984 6.99968 7.26596 7.33709 7.63528 7.74985 8.02990 8.52700 8.66721 9.12011 9.32274 9.45312 10.79830 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.018554 B = 0.002541 C = 0.002431 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1508.719687 B =11014.961676 C =11514.384866 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.895 5.895 2 C 0.070 3.930 3 Si 0.905 3.095 4 H -0.275 1.275 5 H -0.285 1.285 6 H -0.275 1.275 7 C -0.538 4.538 8 H 0.066 0.934 9 C 0.249 3.751 10 O -0.587 6.587 11 C -0.116 4.116 12 C 0.104 3.896 13 N -0.628 5.628 14 C 0.715 3.285 15 O -0.597 6.597 16 N -0.748 5.748 17 C 0.181 3.819 18 C -0.089 4.089 19 C -0.095 4.095 20 C -0.117 4.117 21 C -0.102 4.102 22 C -0.054 4.054 23 C -0.109 4.109 24 C -0.115 4.115 25 C -0.116 4.116 26 C -0.102 4.102 27 C -0.038 4.038 28 C 0.121 3.879 29 H 0.272 0.728 30 H 0.386 0.614 31 H 0.075 0.925 32 H 0.075 0.925 33 H 0.055 0.945 34 H 0.062 0.938 35 H 0.394 0.606 36 H 0.074 0.926 37 H 0.074 0.926 38 H 0.127 0.873 39 H 0.125 0.875 40 H 0.126 0.874 41 H 0.125 0.875 42 H 0.122 0.878 43 H 0.123 0.877 44 H 0.131 0.869 45 H 0.061 0.939 46 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.282 -21.572 8.528 23.427 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.535 5.535 2 C -0.133 4.133 3 Si 0.732 3.268 4 H -0.200 1.200 5 H -0.211 1.211 6 H -0.200 1.200 7 C -0.576 4.576 8 H 0.084 0.916 9 C 0.209 3.791 10 O -0.397 6.397 11 C -0.154 4.154 12 C -0.020 4.020 13 N -0.365 5.365 14 C 0.417 3.583 15 O -0.476 6.476 16 N -0.405 5.405 17 C 0.057 3.943 18 C -0.090 4.090 19 C -0.114 4.114 20 C -0.135 4.135 21 C -0.121 4.121 22 C -0.054 4.054 23 C -0.127 4.127 24 C -0.133 4.133 25 C -0.134 4.134 26 C -0.120 4.120 27 C -0.038 4.038 28 C -0.002 4.002 29 H 0.082 0.918 30 H 0.238 0.762 31 H 0.094 0.906 32 H 0.094 0.906 33 H 0.073 0.927 34 H 0.080 0.920 35 H 0.228 0.772 36 H 0.092 0.908 37 H 0.092 0.908 38 H 0.145 0.855 39 H 0.142 0.858 40 H 0.144 0.856 41 H 0.143 0.857 42 H 0.140 0.860 43 H 0.141 0.859 44 H 0.149 0.851 45 H 0.080 0.920 46 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges 2.942 -21.468 9.059 23.486 hybrid contribution 0.327 1.075 -0.109 1.129 sum 3.270 -20.393 8.950 22.509 Atomic orbital electron populations 1.69565 1.06016 1.28089 1.49790 1.25074 0.95055 0.99782 0.93355 0.86444 0.79528 0.82048 0.78789 1.19994 1.21058 1.20025 1.21480 0.93653 0.90126 1.52319 0.91566 1.19478 0.85864 0.92005 0.81796 1.86068 1.51395 1.53437 1.48792 1.22729 0.97641 0.94891 1.00143 1.22232 0.93818 0.95584 0.90338 1.47929 1.55254 1.12253 1.21076 1.15505 0.80060 0.81221 0.81466 1.90889 1.46707 1.62085 1.47930 1.45154 1.60699 1.08283 1.26384 1.19915 0.98986 0.87148 0.88284 1.19800 0.93505 0.95363 1.00324 1.20859 0.99567 0.92800 0.98200 1.20853 0.97090 0.95581 0.99962 1.21052 0.93235 0.99037 0.98742 1.18088 0.94694 0.92564 1.00070 1.20999 0.92644 0.99663 0.99438 1.20878 0.99494 0.93228 0.99702 1.20916 0.97099 0.95758 0.99607 1.21203 0.93117 0.99729 0.97910 1.17953 0.93857 0.92683 0.99326 1.22903 1.01398 0.76715 0.99145 0.91836 0.76190 0.90601 0.90594 0.92689 0.92024 0.77162 0.90767 0.90806 0.85529 0.85750 0.85581 0.85663 0.86016 0.85853 0.85104 0.92027 0.91858 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -23.91 10.97 55.43 0.61 -23.30 16 2 C 0.07 1.84 5.28 -17.82 -0.09 1.75 16 3 Si 0.90 20.47 29.54 -169.99 -5.02 15.44 16 4 H -0.27 -6.15 7.11 56.52 0.40 -5.75 16 5 H -0.29 -6.42 7.11 56.52 0.40 -6.02 16 6 H -0.27 -6.20 7.11 56.52 0.40 -5.80 16 7 C -0.54 -14.03 8.12 -34.44 -0.28 -14.31 16 8 H 0.07 1.69 7.76 -52.49 -0.41 1.28 16 9 C 0.25 6.04 0.86 -89.93 -0.08 5.96 16 10 O -0.59 -14.87 13.07 -35.23 -0.46 -15.33 16 11 C -0.12 -2.30 6.23 -24.58 -0.15 -2.46 16 12 C 0.10 1.83 6.56 -2.53 -0.02 1.81 16 13 N -0.63 -13.05 3.33 -176.23 -0.59 -13.64 16 14 C 0.72 14.45 8.49 -86.92 -0.74 13.71 16 15 O -0.60 -14.33 16.67 5.29 0.09 -14.24 16 16 N -0.75 -11.31 5.51 -66.41 -0.37 -11.68 16 17 C 0.18 2.37 5.06 -5.19 -0.03 2.35 16 18 C -0.09 -1.00 5.25 -104.53 -0.55 -1.55 16 19 C -0.10 -0.93 9.57 -39.93 -0.38 -1.31 16 20 C -0.12 -0.98 9.95 -39.94 -0.40 -1.38 16 21 C -0.10 -0.87 9.77 -39.49 -0.39 -1.26 16 22 C -0.05 -0.55 5.74 -106.83 -0.61 -1.16 16 23 C -0.11 -0.95 9.77 -39.48 -0.39 -1.33 16 24 C -0.12 -0.99 9.95 -39.93 -0.40 -1.38 16 25 C -0.12 -1.12 9.95 -39.93 -0.40 -1.52 16 26 C -0.10 -1.14 9.29 -39.48 -0.37 -1.50 16 27 C -0.04 -0.43 5.74 -106.83 -0.61 -1.04 16 28 C 0.12 2.95 5.54 -3.06 -0.02 2.93 16 29 H 0.27 6.97 8.31 -40.82 -0.34 6.63 16 30 H 0.39 10.11 6.98 45.56 0.32 10.43 16 31 H 0.08 1.45 8.03 -51.93 -0.42 1.03 16 32 H 0.08 1.43 8.14 -51.93 -0.42 1.01 16 33 H 0.05 0.79 7.30 -51.93 -0.38 0.42 16 34 H 0.06 1.07 8.14 -51.93 -0.42 0.65 16 35 H 0.39 5.33 6.94 -40.82 -0.28 5.04 16 36 H 0.07 0.99 7.98 -51.93 -0.41 0.58 16 37 H 0.07 1.01 6.99 -51.93 -0.36 0.64 16 38 H 0.13 1.09 8.00 -52.49 -0.42 0.67 16 39 H 0.12 0.76 8.06 -52.49 -0.42 0.33 16 40 H 0.13 0.76 8.06 -52.49 -0.42 0.34 16 41 H 0.13 0.77 8.06 -52.49 -0.42 0.35 16 42 H 0.12 0.76 8.06 -52.49 -0.42 0.34 16 43 H 0.12 1.00 8.06 -52.48 -0.42 0.58 16 44 H 0.13 1.55 6.61 -52.49 -0.35 1.20 16 45 H 0.06 1.65 8.07 -51.93 -0.42 1.23 16 46 H 0.06 1.68 7.82 -51.93 -0.41 1.28 16 LS Contribution 378.88 15.07 5.71 5.71 Total: -1.00 -30.77 378.88 -11.55 -42.32 By element: Atomic # 1 Polarization: 22.08 SS G_CDS: -5.63 Total: 16.44 kcal Atomic # 6 Polarization: 4.17 SS G_CDS: -5.89 Total: -1.72 kcal Atomic # 7 Polarization: -48.28 SS G_CDS: -0.34 Total: -48.62 kcal Atomic # 8 Polarization: -29.21 SS G_CDS: -0.37 Total: -29.58 kcal Atomic # 14 Polarization: 20.47 SS G_CDS: -5.02 Total: 15.44 kcal Total LS contribution 5.71 Total: 5.71 kcal Total: -30.77 -11.55 -42.32 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000591937374.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.098 kcal (2) G-P(sol) polarization free energy of solvation -30.768 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.671 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.549 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.318 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.220 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds