Wall clock time and date at job start Sat Apr 11 2020 06:00:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31506 * 1 3 3 Si 1.86802 * 119.99960 * 2 1 4 4 H 1.48498 * 109.47356 * 239.99866 * 3 2 1 5 5 H 1.48493 * 109.47204 * 0.02562 * 3 2 1 6 6 H 1.48501 * 109.47295 * 119.99968 * 3 2 1 7 7 C 1.37876 * 120.00109 * 180.02562 * 2 1 3 8 8 H 1.07998 * 120.00091 * 180.02562 * 7 2 1 9 9 C 1.50705 * 119.99950 * 359.97438 * 7 2 1 10 10 O 1.42896 * 110.64002 * 56.86049 * 9 7 2 11 11 C 1.55154 * 110.71862 * 180.02562 * 9 7 2 12 12 C 1.54909 * 101.58258 * 154.04325 * 11 9 7 13 13 N 1.47429 * 104.83130 * 322.99093 * 12 11 9 14 14 C 1.34770 * 125.65186 * 204.09046 * 13 12 11 15 15 O 1.21586 * 120.00595 * 180.02562 * 14 13 12 16 16 N 1.34786 * 119.99746 * 0.02621 * 14 13 12 17 17 C 1.46501 * 119.99597 * 180.02562 * 16 14 13 18 18 C 1.50697 * 109.46526 * 179.97438 * 17 16 14 19 19 C 1.36130 * 120.17534 * 259.99558 * 18 17 16 20 20 C 1.39329 * 120.99258 * 179.97438 * 19 18 17 21 21 C 1.36125 * 120.98923 * 359.97438 * 20 19 18 22 22 C 1.40501 * 119.65263 * 0.02562 * 21 20 19 23 23 C 1.40557 * 121.28769 * 179.97438 * 22 21 20 24 24 C 1.36081 * 119.65010 * 180.02562 * 23 22 21 25 25 C 1.39382 * 120.99895 * 359.97438 * 24 23 22 26 26 C 1.36095 * 120.99034 * 0.04015 * 25 24 23 27 27 C 1.40507 * 120.17539 * 79.97890 * 18 17 16 28 28 C 1.47025 * 108.70282 * 24.35278 * 13 12 11 29 29 H 0.97004 * 119.99974 * 359.97438 * 1 2 3 30 30 H 0.96700 * 113.99824 * 303.14023 * 10 9 7 31 31 H 1.09007 * 111.00549 * 35.96968 * 11 9 7 32 32 H 1.09003 * 111.03807 * 272.13303 * 11 9 7 33 33 H 1.08995 * 110.37079 * 204.15657 * 12 11 9 34 34 H 1.09000 * 110.36939 * 81.82564 * 12 11 9 35 35 H 0.96992 * 119.99828 * 359.97438 * 16 14 13 36 36 H 1.08997 * 109.47447 * 59.99918 * 17 16 14 37 37 H 1.09001 * 109.47381 * 299.99318 * 17 16 14 38 38 H 1.08000 * 119.50276 * 0.02562 * 19 18 17 39 39 H 1.07999 * 119.50947 * 180.02562 * 20 19 18 40 40 H 1.07998 * 120.17668 * 179.72489 * 21 20 19 41 41 H 1.07995 * 120.17070 * 0.02562 * 23 22 21 42 42 H 1.08000 * 119.50492 * 180.02562 * 24 23 22 43 43 H 1.08004 * 119.50792 * 180.02562 * 25 24 23 44 44 H 1.08000 * 120.16947 * 179.97438 * 26 25 24 45 45 H 1.09001 * 109.88421 * 118.12998 * 28 13 12 46 46 H 1.08997 * 109.88279 * 239.30125 * 28 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1028 1.6965 -1.2124 5 1 1.2841 2.7464 0.0006 6 1 3.1028 1.6965 1.2125 7 6 2.0045 -1.1940 -0.0005 8 1 3.0844 -1.1940 -0.0001 9 6 1.2510 -2.4992 -0.0005 10 8 0.3656 -2.5696 -1.1199 11 6 2.2333 -3.7001 -0.0005 12 6 1.3741 -4.8048 0.6637 13 7 0.5905 -4.1033 1.6968 14 6 0.0655 -4.6673 2.8025 15 8 -0.5663 -3.9892 3.5896 16 7 0.2408 -5.9831 3.0359 17 6 -0.3304 -6.5963 4.2376 18 6 0.0064 -8.0650 4.2605 19 6 -0.9162 -8.9848 3.8656 20 6 -0.6228 -10.3468 3.8794 21 6 0.5951 -10.7973 4.2877 22 6 1.5731 -9.8778 4.7026 23 6 2.8416 -10.3050 5.1313 24 6 3.7636 -9.3855 5.5265 25 6 3.4702 -8.0230 5.5127 26 6 2.2527 -7.5725 5.1043 27 6 1.2744 -8.4922 4.6892 28 6 0.4713 -2.6877 1.3180 29 1 -0.4850 0.8401 0.0004 30 1 -0.2691 -1.8415 -1.1659 31 1 3.1182 -3.4811 0.5972 32 1 2.5104 -3.9790 -1.0172 33 1 2.0138 -5.5598 1.1204 34 1 0.7105 -5.2620 -0.0703 35 1 0.7444 -6.5242 2.4079 36 1 -1.4133 -6.4723 4.2291 37 1 0.0836 -6.1144 5.1233 38 1 -1.8899 -8.6538 3.5358 39 1 -1.3726 -11.0557 3.5606 40 1 0.8069 -11.8563 4.2973 41 1 3.0833 -11.3575 5.1469 42 1 4.7378 -9.7164 5.8551 43 1 4.2202 -7.3141 5.8311 44 1 2.0394 -6.5138 5.0993 45 1 -0.5776 -2.4304 1.1706 46 1 0.9039 -2.0581 2.0955 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000591937374.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:00:26 Heat of formation + Delta-G solvation = -50.419297 kcal Electronic energy + Delta-G solvation = -29018.828055 eV Core-core repulsion = 25065.155277 eV Total energy + Delta-G solvation = -3953.672778 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.157 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -41.65730 -41.05532 -39.18660 -37.59418 -36.11139 -36.10043 -34.17135 -33.53062 -31.72506 -31.21479 -30.49244 -29.59128 -27.65526 -26.29540 -24.29980 -24.07639 -23.88161 -21.82557 -21.43384 -21.05602 -19.33153 -18.96380 -18.40940 -17.85535 -17.52177 -17.10209 -16.90820 -16.76198 -16.19420 -15.70634 -15.56319 -15.05287 -14.98742 -14.78293 -14.71667 -14.48121 -14.41117 -14.13729 -14.00780 -13.56507 -13.48555 -13.42932 -13.23310 -12.84080 -12.74418 -12.55376 -12.33039 -12.31382 -12.25827 -12.10482 -11.84655 -11.68159 -11.40299 -11.20417 -10.85255 -10.64018 -10.32376 -10.28183 -9.54262 -9.43339 -8.83232 -8.27114 -6.43144 -0.46118 0.08667 0.99371 1.42637 1.43518 1.51599 1.70739 2.10005 2.11804 2.37739 2.99201 3.01525 3.25560 3.48785 3.79235 3.80627 3.91110 3.99141 4.07125 4.14521 4.15364 4.29553 4.35189 4.35396 4.46140 4.50663 4.56679 4.62149 4.67644 4.70076 4.86376 5.01861 5.03494 5.11364 5.21298 5.23193 5.27356 5.34733 5.35266 5.39734 5.47283 5.51553 5.62997 5.71536 5.75150 5.90343 5.99972 6.09577 6.13123 6.63244 7.00709 7.28805 7.38317 7.51238 8.79043 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.018554 B = 0.002541 C = 0.002431 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1508.719687 B =11014.961676 C =11514.384866 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.917 5.917 2 C 0.024 3.976 3 Si 0.965 3.035 4 H -0.267 1.267 5 H -0.284 1.284 6 H -0.273 1.273 7 C -0.558 4.558 8 H 0.069 0.931 9 C 0.235 3.765 10 O -0.589 6.589 11 C -0.110 4.110 12 C 0.109 3.891 13 N -0.633 5.633 14 C 0.712 3.288 15 O -0.642 6.642 16 N -0.723 5.723 17 C 0.185 3.815 18 C -0.109 4.109 19 C -0.092 4.092 20 C -0.123 4.123 21 C -0.094 4.094 22 C -0.073 4.073 23 C -0.104 4.104 24 C -0.123 4.123 25 C -0.117 4.117 26 C -0.129 4.129 27 C -0.051 4.051 28 C 0.139 3.861 29 H 0.271 0.729 30 H 0.378 0.622 31 H 0.083 0.917 32 H 0.091 0.909 33 H 0.096 0.904 34 H 0.070 0.930 35 H 0.406 0.594 36 H 0.069 0.931 37 H 0.062 0.938 38 H 0.134 0.866 39 H 0.152 0.848 40 H 0.157 0.843 41 H 0.155 0.845 42 H 0.148 0.852 43 H 0.133 0.867 44 H 0.112 0.888 45 H 0.026 0.974 46 H 0.031 0.969 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.905 -24.838 8.388 26.671 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.557 5.557 2 C -0.176 4.176 3 Si 0.790 3.210 4 H -0.191 1.191 5 H -0.209 1.209 6 H -0.199 1.199 7 C -0.596 4.596 8 H 0.087 0.913 9 C 0.194 3.806 10 O -0.398 6.398 11 C -0.148 4.148 12 C -0.013 4.013 13 N -0.370 5.370 14 C 0.414 3.586 15 O -0.525 6.525 16 N -0.380 5.380 17 C 0.061 3.939 18 C -0.109 4.109 19 C -0.110 4.110 20 C -0.141 4.141 21 C -0.111 4.111 22 C -0.073 4.073 23 C -0.122 4.122 24 C -0.141 4.141 25 C -0.135 4.135 26 C -0.147 4.147 27 C -0.051 4.051 28 C 0.015 3.985 29 H 0.081 0.919 30 H 0.229 0.771 31 H 0.102 0.898 32 H 0.109 0.891 33 H 0.114 0.886 34 H 0.088 0.912 35 H 0.242 0.758 36 H 0.087 0.913 37 H 0.080 0.920 38 H 0.152 0.848 39 H 0.170 0.830 40 H 0.175 0.825 41 H 0.173 0.827 42 H 0.165 0.835 43 H 0.151 0.849 44 H 0.131 0.869 45 H 0.044 0.956 46 H 0.049 0.951 Dipole moment (debyes) X Y Z Total from point charges 4.594 -24.805 8.907 26.753 hybrid contribution -0.180 1.989 -0.010 1.997 sum 4.414 -22.816 8.896 24.884 Atomic orbital electron populations 1.69675 1.07161 1.28644 1.50234 1.25839 0.95820 1.02909 0.93044 0.85498 0.78331 0.78267 0.78896 1.19136 1.20934 1.19857 1.21825 0.94002 0.91323 1.52445 0.91323 1.19691 0.86329 0.93539 0.81016 1.86056 1.51427 1.53033 1.49331 1.22720 0.97075 0.93463 1.01517 1.22369 0.93772 0.95379 0.89788 1.47857 1.55950 1.11137 1.22031 1.15701 0.79636 0.82471 0.80805 1.90850 1.48655 1.63588 1.49384 1.44985 1.59731 1.06308 1.26979 1.19925 0.98351 0.88776 0.86810 1.19561 0.94489 0.93868 1.02991 1.21081 0.99449 0.93519 0.96999 1.21150 0.97939 0.95197 0.99815 1.21439 0.92564 1.00302 0.96840 1.18399 0.95983 0.92181 1.00742 1.21379 0.91781 1.01202 0.97850 1.21183 1.00793 0.92531 0.99594 1.21160 0.96669 0.96972 0.98661 1.21142 0.94289 0.99032 1.00195 1.18076 0.93721 0.93624 0.99684 1.22411 0.98868 0.78641 0.98621 0.91925 0.77089 0.89843 0.89095 0.88624 0.91184 0.75799 0.91257 0.91968 0.84779 0.83049 0.82542 0.82705 0.83471 0.84888 0.86948 0.95552 0.95099 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -50.57 10.97 21.45 0.24 -50.34 16 2 C 0.02 1.30 5.28 84.66 0.45 1.75 16 3 Si 0.96 42.38 29.54 68.60 2.03 44.41 16 4 H -0.27 -11.29 7.11 99.48 0.71 -10.58 16 5 H -0.28 -12.31 7.11 99.48 0.71 -11.61 16 6 H -0.27 -11.85 7.11 99.48 0.71 -11.14 16 7 C -0.56 -29.52 8.12 25.60 0.21 -29.31 16 8 H 0.07 3.51 7.76 -2.91 -0.02 3.48 16 9 C 0.23 11.55 0.86 -10.35 -0.01 11.54 16 10 O -0.59 -30.40 13.07 -148.98 -1.95 -32.35 16 11 C -0.11 -4.23 6.23 31.98 0.20 -4.03 16 12 C 0.11 3.67 6.56 86.85 0.57 4.24 16 13 N -0.63 -26.72 3.33 -829.73 -2.76 -29.47 16 14 C 0.71 29.53 8.49 179.05 1.52 31.05 16 15 O -0.64 -32.38 16.67 -3.99 -0.07 -32.44 16 16 N -0.72 -21.98 5.51 -482.29 -2.66 -24.64 16 17 C 0.18 4.99 5.06 85.63 0.43 5.43 16 18 C -0.11 -2.38 5.25 -19.80 -0.10 -2.48 16 19 C -0.09 -1.64 9.57 22.04 0.21 -1.43 16 20 C -0.12 -1.69 9.95 22.04 0.22 -1.47 16 21 C -0.09 -1.26 9.77 22.33 0.22 -1.04 16 22 C -0.07 -1.29 5.74 -21.30 -0.12 -1.42 16 23 C -0.10 -1.47 9.77 22.33 0.22 -1.25 16 24 C -0.12 -1.79 9.95 22.04 0.22 -1.58 16 25 C -0.12 -2.15 9.95 22.05 0.22 -1.93 16 26 C -0.13 -2.88 9.29 22.33 0.21 -2.68 16 27 C -0.05 -1.10 5.74 -21.30 -0.12 -1.23 16 28 C 0.14 7.08 5.54 86.73 0.48 7.57 16 29 H 0.27 14.33 8.31 -92.71 -0.77 13.56 16 30 H 0.38 20.55 6.98 -74.06 -0.52 20.03 16 31 H 0.08 3.07 8.03 -2.38 -0.02 3.05 16 32 H 0.09 3.23 8.14 -2.39 -0.02 3.21 16 33 H 0.10 2.47 7.30 -2.39 -0.02 2.46 16 34 H 0.07 2.28 8.14 -2.39 -0.02 2.26 16 35 H 0.41 10.50 6.94 -92.71 -0.64 9.85 16 36 H 0.07 1.93 7.98 -2.39 -0.02 1.91 16 37 H 0.06 1.82 6.99 -2.39 -0.02 1.80 16 38 H 0.13 2.11 8.00 -2.91 -0.02 2.09 16 39 H 0.15 1.23 8.06 -2.91 -0.02 1.21 16 40 H 0.16 1.11 8.06 -2.91 -0.02 1.08 16 41 H 0.16 1.19 8.06 -2.91 -0.02 1.17 16 42 H 0.15 1.33 8.06 -2.91 -0.02 1.31 16 43 H 0.13 2.05 8.06 -2.91 -0.02 2.02 16 44 H 0.11 2.83 6.61 -2.91 -0.02 2.81 16 45 H 0.03 1.50 8.07 -2.39 -0.02 1.48 16 46 H 0.03 1.73 7.82 -2.39 -0.02 1.72 16 Total: -1.00 -69.64 378.88 -0.30 -69.94 By element: Atomic # 1 Polarization: 43.31 SS G_CDS: -0.14 Total: 43.17 kcal Atomic # 6 Polarization: 6.71 SS G_CDS: 5.01 Total: 11.73 kcal Atomic # 7 Polarization: -99.27 SS G_CDS: -5.18 Total: -104.45 kcal Atomic # 8 Polarization: -62.78 SS G_CDS: -2.01 Total: -64.80 kcal Atomic # 14 Polarization: 42.38 SS G_CDS: 2.03 Total: 44.41 kcal Total: -69.64 -0.30 -69.94 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000591937374.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.519 kcal (2) G-P(sol) polarization free energy of solvation -69.642 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.122 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.297 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.939 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.419 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds