Wall clock time and date at job start Sat Apr 11 2020 06:00:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46504 * 1 3 3 C 1.35039 * 126.03889 * 2 1 4 4 C 1.35380 * 107.72903 * 180.02562 * 3 2 1 5 5 Cl 1.73599 * 126.04512 * 179.97438 * 4 3 2 6 6 C 1.39930 * 107.90850 * 0.02562 * 4 3 2 7 7 C 1.50694 * 125.89329 * 179.97438 * 6 4 3 8 8 N 1.46503 * 109.47263 * 90.00337 * 7 6 4 9 9 C 1.34773 * 120.00018 * 180.02562 * 8 7 6 10 10 O 1.21588 * 120.00335 * 4.97733 * 9 8 7 11 11 N 1.34782 * 119.99805 * 184.97803 * 9 8 7 12 12 C 1.46920 * 120.62999 * 354.77405 * 11 9 8 13 13 C 1.53192 * 108.89365 * 233.67548 * 12 11 9 14 14 C 1.53031 * 109.31310 * 305.29643 * 13 12 11 15 15 C 1.53004 * 109.45852 * 181.38124 * 14 13 12 16 16 C 1.50709 * 109.46887 * 175.00060 * 15 14 13 17 17 H 1.07992 * 119.99864 * 0.02562 * 16 15 14 18 18 C 1.37881 * 119.99608 * 180.02562 * 16 15 14 19 19 N 1.31509 * 119.99993 * 359.97438 * 18 16 15 20 20 Si 1.86797 * 119.99807 * 180.02562 * 18 16 15 21 21 H 1.48504 * 109.46962 * 359.97438 * 20 18 16 22 22 H 1.48494 * 109.47179 * 119.99446 * 20 18 16 23 23 H 1.48499 * 109.47013 * 239.99949 * 20 18 16 24 24 C 1.53041 * 109.53895 * 61.36520 * 14 13 12 25 25 C 1.47201 * 120.81146 * 174.91534 * 11 9 8 26 26 N 1.30851 * 108.20933 * 0.22616 * 6 4 3 27 27 H 1.08991 * 109.46962 * 89.99465 * 1 2 3 28 28 H 1.08997 * 109.47083 * 210.00110 * 1 2 3 29 29 H 1.09003 * 109.46545 * 330.00107 * 1 2 3 30 30 H 1.07998 * 126.13904 * 0.02606 * 3 2 1 31 31 H 1.08997 * 109.47030 * 329.99974 * 7 6 4 32 32 H 1.09000 * 109.47174 * 209.99915 * 7 6 4 33 33 H 0.97009 * 119.99546 * 359.97438 * 8 7 6 34 34 H 1.09008 * 109.58722 * 113.82105 * 12 11 9 35 35 H 1.09004 * 109.59155 * 353.53507 * 12 11 9 36 36 H 1.09008 * 109.49387 * 65.25184 * 13 12 11 37 37 H 1.09004 * 109.49973 * 185.30625 * 13 12 11 38 38 H 1.08995 * 109.46445 * 301.35465 * 14 13 12 39 39 H 1.08997 * 109.47461 * 294.99773 * 15 14 13 40 40 H 1.09002 * 109.47179 * 54.99943 * 15 14 13 41 41 H 0.97005 * 120.00041 * 180.02562 * 19 18 16 42 42 H 1.08997 * 109.50104 * 58.58643 * 24 14 13 43 43 H 1.09006 * 109.49750 * 178.68531 * 24 14 13 44 44 H 1.09000 * 109.53945 * 6.53126 * 25 11 9 45 45 H 1.09004 * 109.67937 * 246.22854 * 25 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2595 1.0919 0.0000 4 6 3.5448 0.6666 -0.0006 5 17 4.9555 1.6783 -0.0014 6 6 3.5350 -0.7326 -0.0015 7 6 4.7495 -1.6246 -0.0030 8 7 5.1440 -1.9147 1.3778 9 6 6.2125 -2.6988 1.6228 10 8 6.9025 -3.0914 0.7018 11 7 6.5161 -3.0479 2.8887 12 6 5.7624 -2.4906 4.0201 13 6 6.7476 -1.8643 5.0121 14 6 7.7953 -2.9060 5.4107 15 6 8.7609 -2.2943 6.4279 16 6 9.7170 -3.3535 6.9128 17 1 9.6436 -4.3618 6.5332 18 6 10.6855 -3.0351 7.8412 19 7 10.7751 -1.8070 8.3031 20 14 11.8711 -4.3477 8.4417 21 1 11.5624 -5.6371 7.7727 22 1 13.2628 -3.9428 8.1188 23 1 11.7301 -4.5070 9.9114 24 6 8.5748 -3.3487 4.1703 25 6 7.6103 -3.9918 3.1688 26 7 2.2892 -1.1328 -0.0064 27 1 -0.3633 0.0001 -1.0276 28 1 -0.3633 -0.8899 0.5138 29 1 -0.3632 0.8900 0.5138 30 1 1.9290 2.1201 0.0004 31 1 5.5688 -1.1220 -0.5170 32 1 4.5152 -2.5567 -0.5173 33 1 4.6366 -1.5418 2.1157 34 1 5.2028 -3.2854 4.5134 35 1 5.0725 -1.7276 3.6593 36 1 7.2412 -1.0118 4.5454 37 1 6.2086 -1.5316 5.8992 38 1 7.2990 -3.7689 5.8546 39 1 9.3215 -1.4870 5.9568 40 1 8.1966 -1.8998 7.2729 41 1 11.4567 -1.5829 8.9559 42 1 9.0512 -2.4824 3.7116 43 1 9.3364 -4.0733 4.4586 44 1 8.1413 -4.2191 2.2444 45 1 7.2034 -4.9104 3.5916 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000592010523.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:00:31 Heat of formation + Delta-G solvation = 38.995814 kcal Electronic energy + Delta-G solvation = -26898.374073 eV Core-core repulsion = 22978.438527 eV Total energy + Delta-G solvation = -3919.935547 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.141 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -41.83926 -40.13285 -37.48968 -36.74333 -35.33381 -34.00269 -33.31005 -32.01927 -30.74039 -30.50344 -28.79435 -27.64984 -25.55364 -24.44569 -22.67229 -21.87402 -21.83531 -20.65733 -20.03008 -19.16150 -18.04611 -17.41949 -16.45646 -16.20975 -15.87945 -15.60438 -15.01243 -14.70286 -14.59227 -14.44407 -14.14476 -13.72595 -13.54329 -13.43420 -13.24512 -13.16105 -12.83142 -12.76078 -12.46879 -12.07610 -11.98496 -11.84302 -11.75802 -11.16455 -10.96742 -10.85606 -10.70949 -10.65440 -10.37473 -10.20087 -10.04177 -9.79779 -9.58390 -9.23005 -9.11465 -8.92207 -8.87248 -8.32728 -8.17874 -5.97210 -3.98616 1.16356 1.51851 1.85749 2.32861 2.95852 3.32984 3.37139 3.40890 3.44527 3.92255 4.03933 4.12029 4.36287 4.48388 4.57261 4.79426 4.85204 5.00179 5.09278 5.31887 5.38340 5.41482 5.46662 5.51283 5.66232 5.73403 5.80347 5.87984 6.04584 6.16051 6.26517 6.38807 6.41167 6.44560 6.55501 6.70328 7.01221 7.02211 7.07513 7.13908 7.19066 7.69868 7.84788 8.02911 8.06771 8.45809 8.73798 9.08125 9.65155 11.14137 Molecular weight = 340.14amu Principal moments of inertia in cm(-1) A = 0.019602 B = 0.002179 C = 0.002135 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1428.100980 B =12848.583156 C =13114.267464 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.101 3.899 2 N -0.365 5.365 3 C 0.071 3.929 4 C -0.175 4.175 5 Cl -0.030 7.030 6 C 0.074 3.926 7 C 0.221 3.779 8 N -0.743 5.743 9 C 0.712 3.288 10 O -0.594 6.594 11 N -0.621 5.621 12 C 0.114 3.886 13 C -0.130 4.130 14 C -0.080 4.080 15 C 0.027 3.973 16 C -0.514 4.514 17 H 0.057 0.943 18 C 0.055 3.945 19 N -0.896 5.896 20 Si 0.889 3.111 21 H -0.273 1.273 22 H -0.285 1.285 23 H -0.285 1.285 24 C -0.119 4.119 25 C 0.127 3.873 26 N -0.262 5.262 27 H 0.080 0.920 28 H 0.094 0.906 29 H 0.093 0.907 30 H 0.186 0.814 31 H 0.091 0.909 32 H 0.084 0.916 33 H 0.397 0.603 34 H 0.066 0.934 35 H 0.064 0.936 36 H 0.062 0.938 37 H 0.069 0.931 38 H 0.058 0.942 39 H 0.015 0.985 40 H 0.015 0.985 41 H 0.259 0.741 42 H 0.058 0.942 43 H 0.084 0.916 44 H 0.086 0.914 45 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.283 6.918 -17.409 29.884 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.039 4.039 2 N -0.147 5.147 3 C -0.076 4.076 4 C -0.213 4.213 5 Cl -0.002 7.002 6 C -0.093 4.093 7 C 0.095 3.905 8 N -0.403 5.403 9 C 0.413 3.587 10 O -0.473 6.473 11 N -0.358 5.358 12 C -0.009 4.009 13 C -0.168 4.168 14 C -0.098 4.098 15 C -0.010 4.010 16 C -0.552 4.552 17 H 0.075 0.925 18 C -0.146 4.146 19 N -0.536 5.536 20 Si 0.717 3.283 21 H -0.197 1.197 22 H -0.211 1.211 23 H -0.212 1.212 24 C -0.157 4.157 25 C 0.005 3.995 26 N -0.085 5.085 27 H 0.098 0.902 28 H 0.113 0.887 29 H 0.111 0.889 30 H 0.203 0.797 31 H 0.109 0.891 32 H 0.102 0.898 33 H 0.233 0.767 34 H 0.084 0.916 35 H 0.083 0.917 36 H 0.080 0.920 37 H 0.088 0.912 38 H 0.076 0.924 39 H 0.034 0.966 40 H 0.033 0.967 41 H 0.068 0.932 42 H 0.077 0.923 43 H 0.102 0.898 44 H 0.105 0.895 45 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -23.533 5.796 -17.989 30.183 hybrid contribution 0.901 0.608 0.885 1.402 sum -22.632 6.404 -17.104 29.082 Atomic orbital electron populations 1.21998 0.72824 1.05155 1.03961 1.48357 1.06989 1.03430 1.55947 1.22281 0.89581 0.94162 1.01607 1.20749 0.89147 0.91310 1.20135 1.98368 1.37246 1.66911 1.97638 1.22252 0.93686 0.92262 1.01134 1.19286 0.90178 0.97168 0.83842 1.45114 1.32428 1.54942 1.07807 1.15694 0.80654 0.78971 0.83338 1.90895 1.52534 1.60618 1.43226 1.47384 1.36736 1.48050 1.03632 1.21667 0.94048 0.97442 0.87773 1.22027 0.97454 0.99449 0.97856 1.21173 0.95653 0.96928 0.96068 1.19130 0.93146 0.95973 0.92710 1.21286 1.14572 0.96133 1.23221 0.92495 1.25026 0.97699 0.95249 0.96589 1.69973 1.34501 1.18149 1.30952 0.86587 0.81087 0.82129 0.78506 1.19719 1.21105 1.21162 1.21911 0.97623 1.01306 0.94839 1.21710 0.87237 0.90355 1.00209 1.77524 1.00306 1.07652 1.23022 0.90162 0.88695 0.88884 0.79669 0.89112 0.89831 0.76655 0.91584 0.91728 0.91954 0.91217 0.92376 0.96634 0.96694 0.93158 0.92303 0.89778 0.89538 0.92073 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 0.27 11.47 59.85 0.69 0.96 16 2 N -0.37 -2.61 4.02 -68.12 -0.27 -2.89 16 3 C 0.07 0.48 11.47 -17.16 -0.20 0.28 16 4 C -0.17 -1.62 6.64 -39.97 -0.27 -1.89 16 5 Cl -0.03 -0.29 29.01 -51.86 -1.50 -1.80 16 6 C 0.07 0.77 6.59 -82.38 -0.54 0.23 16 7 C 0.22 2.58 6.10 -5.19 -0.03 2.55 16 8 N -0.74 -9.46 5.46 -66.42 -0.36 -9.82 16 9 C 0.71 11.42 8.30 -86.92 -0.72 10.70 16 10 O -0.59 -11.48 15.79 5.29 0.08 -11.39 16 11 N -0.62 -9.58 2.98 -178.27 -0.53 -10.11 16 12 C 0.11 1.52 6.38 -3.71 -0.02 1.50 16 13 C -0.13 -2.08 5.36 -26.62 -0.14 -2.23 16 14 C -0.08 -1.55 2.10 -90.58 -0.19 -1.74 16 15 C 0.03 0.69 4.45 -27.88 -0.12 0.56 16 16 C -0.51 -14.11 8.39 -34.43 -0.29 -14.40 16 17 H 0.06 1.52 7.05 -52.49 -0.37 1.15 16 18 C 0.06 1.57 5.46 -17.82 -0.10 1.47 16 19 N -0.90 -26.83 13.29 55.43 0.74 -26.09 16 20 Si 0.89 21.60 29.54 -169.99 -5.02 16.58 16 21 H -0.27 -6.46 7.11 56.52 0.40 -6.06 16 22 H -0.28 -6.91 7.11 56.52 0.40 -6.51 16 23 H -0.29 -6.89 7.11 56.52 0.40 -6.49 16 24 C -0.12 -2.21 5.19 -26.61 -0.14 -2.35 16 25 C 0.13 2.08 6.45 -3.56 -0.02 2.05 16 26 N -0.26 -2.70 12.57 33.68 0.42 -2.28 16 27 H 0.08 0.12 8.14 -51.93 -0.42 -0.30 16 28 H 0.09 0.25 8.14 -51.93 -0.42 -0.17 16 29 H 0.09 0.02 8.14 -51.93 -0.42 -0.41 16 30 H 0.19 0.59 8.06 -52.49 -0.42 0.17 16 31 H 0.09 1.10 8.00 -51.93 -0.42 0.69 16 32 H 0.08 0.99 8.14 -51.93 -0.42 0.57 16 33 H 0.40 4.48 5.95 -40.82 -0.24 4.24 16 34 H 0.07 0.82 8.14 -51.92 -0.42 0.40 16 35 H 0.06 0.72 5.64 -51.93 -0.29 0.42 16 36 H 0.06 1.06 8.14 -51.92 -0.42 0.64 16 37 H 0.07 1.06 8.14 -51.93 -0.42 0.64 16 38 H 0.06 1.13 8.14 -51.93 -0.42 0.71 16 39 H 0.02 0.42 8.14 -51.93 -0.42 -0.01 16 40 H 0.01 0.39 8.14 -51.93 -0.42 -0.03 16 41 H 0.26 7.33 8.31 -40.82 -0.34 6.99 16 42 H 0.06 1.17 8.14 -51.93 -0.42 0.74 16 43 H 0.08 1.67 6.91 -51.93 -0.36 1.31 16 44 H 0.09 1.47 7.01 -51.93 -0.36 1.11 16 45 H 0.06 0.92 8.14 -51.93 -0.42 0.50 16 LS Contribution 382.97 15.07 5.77 5.77 Total: -1.00 -34.57 382.97 -9.45 -44.03 By element: Atomic # 1 Polarization: 6.98 SS G_CDS: -6.68 Total: 0.30 kcal Atomic # 6 Polarization: -0.20 SS G_CDS: -2.10 Total: -2.30 kcal Atomic # 7 Polarization: -51.18 SS G_CDS: -0.01 Total: -51.19 kcal Atomic # 8 Polarization: -11.48 SS G_CDS: 0.08 Total: -11.39 kcal Atomic # 14 Polarization: 21.60 SS G_CDS: -5.02 Total: 16.58 kcal Atomic # 17 Polarization: -0.29 SS G_CDS: -1.50 Total: -1.80 kcal Total LS contribution 5.77 Total: 5.77 kcal Total: -34.57 -9.45 -44.03 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000592010523.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 83.021 kcal (2) G-P(sol) polarization free energy of solvation -34.571 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 48.450 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.454 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.025 kcal (6) G-S(sol) free energy of system = (1) + (5) 38.996 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds