Wall clock time and date at job start Sat Apr 11 2020 06:00:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46504 * 1 3 3 C 1.35039 * 126.03889 * 2 1 4 4 C 1.35380 * 107.72903 * 180.02562 * 3 2 1 5 5 Cl 1.73599 * 126.04512 * 179.97438 * 4 3 2 6 6 C 1.39930 * 107.90850 * 0.02562 * 4 3 2 7 7 C 1.50694 * 125.89329 * 179.97438 * 6 4 3 8 8 N 1.46503 * 109.47263 * 90.00337 * 7 6 4 9 9 C 1.34773 * 120.00018 * 180.02562 * 8 7 6 10 10 O 1.21588 * 120.00335 * 4.97733 * 9 8 7 11 11 N 1.34782 * 119.99805 * 184.97803 * 9 8 7 12 12 C 1.46920 * 120.62999 * 354.77405 * 11 9 8 13 13 C 1.53192 * 108.89365 * 233.67548 * 12 11 9 14 14 C 1.53031 * 109.31310 * 305.29643 * 13 12 11 15 15 C 1.53004 * 109.45852 * 181.38124 * 14 13 12 16 16 C 1.50709 * 109.46887 * 175.00060 * 15 14 13 17 17 H 1.07992 * 119.99864 * 0.02562 * 16 15 14 18 18 C 1.37881 * 119.99608 * 180.02562 * 16 15 14 19 19 N 1.31509 * 119.99993 * 359.97438 * 18 16 15 20 20 Si 1.86797 * 119.99807 * 180.02562 * 18 16 15 21 21 H 1.48504 * 109.46962 * 359.97438 * 20 18 16 22 22 H 1.48494 * 109.47179 * 119.99446 * 20 18 16 23 23 H 1.48499 * 109.47013 * 239.99949 * 20 18 16 24 24 C 1.53041 * 109.53895 * 61.36520 * 14 13 12 25 25 C 1.47201 * 120.81146 * 174.91534 * 11 9 8 26 26 N 1.30851 * 108.20933 * 0.22616 * 6 4 3 27 27 H 1.08991 * 109.46962 * 89.99465 * 1 2 3 28 28 H 1.08997 * 109.47083 * 210.00110 * 1 2 3 29 29 H 1.09003 * 109.46545 * 330.00107 * 1 2 3 30 30 H 1.07998 * 126.13904 * 0.02606 * 3 2 1 31 31 H 1.08997 * 109.47030 * 329.99974 * 7 6 4 32 32 H 1.09000 * 109.47174 * 209.99915 * 7 6 4 33 33 H 0.97009 * 119.99546 * 359.97438 * 8 7 6 34 34 H 1.09008 * 109.58722 * 113.82105 * 12 11 9 35 35 H 1.09004 * 109.59155 * 353.53507 * 12 11 9 36 36 H 1.09008 * 109.49387 * 65.25184 * 13 12 11 37 37 H 1.09004 * 109.49973 * 185.30625 * 13 12 11 38 38 H 1.08995 * 109.46445 * 301.35465 * 14 13 12 39 39 H 1.08997 * 109.47461 * 294.99773 * 15 14 13 40 40 H 1.09002 * 109.47179 * 54.99943 * 15 14 13 41 41 H 0.97005 * 120.00041 * 180.02562 * 19 18 16 42 42 H 1.08997 * 109.50104 * 58.58643 * 24 14 13 43 43 H 1.09006 * 109.49750 * 178.68531 * 24 14 13 44 44 H 1.09000 * 109.53945 * 6.53126 * 25 11 9 45 45 H 1.09004 * 109.67937 * 246.22854 * 25 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2595 1.0919 0.0000 4 6 3.5448 0.6666 -0.0006 5 17 4.9555 1.6783 -0.0014 6 6 3.5350 -0.7326 -0.0015 7 6 4.7495 -1.6246 -0.0030 8 7 5.1440 -1.9147 1.3778 9 6 6.2125 -2.6988 1.6228 10 8 6.9025 -3.0914 0.7018 11 7 6.5161 -3.0479 2.8887 12 6 5.7624 -2.4906 4.0201 13 6 6.7476 -1.8643 5.0121 14 6 7.7953 -2.9060 5.4107 15 6 8.7609 -2.2943 6.4279 16 6 9.7170 -3.3535 6.9128 17 1 9.6436 -4.3618 6.5332 18 6 10.6855 -3.0351 7.8412 19 7 10.7751 -1.8070 8.3031 20 14 11.8711 -4.3477 8.4417 21 1 11.5624 -5.6371 7.7727 22 1 13.2628 -3.9428 8.1188 23 1 11.7301 -4.5070 9.9114 24 6 8.5748 -3.3487 4.1703 25 6 7.6103 -3.9918 3.1688 26 7 2.2892 -1.1328 -0.0064 27 1 -0.3633 0.0001 -1.0276 28 1 -0.3633 -0.8899 0.5138 29 1 -0.3632 0.8900 0.5138 30 1 1.9290 2.1201 0.0004 31 1 5.5688 -1.1220 -0.5170 32 1 4.5152 -2.5567 -0.5173 33 1 4.6366 -1.5418 2.1157 34 1 5.2028 -3.2854 4.5134 35 1 5.0725 -1.7276 3.6593 36 1 7.2412 -1.0118 4.5454 37 1 6.2086 -1.5316 5.8992 38 1 7.2990 -3.7689 5.8546 39 1 9.3215 -1.4870 5.9568 40 1 8.1966 -1.8998 7.2729 41 1 11.4567 -1.5829 8.9559 42 1 9.0512 -2.4824 3.7116 43 1 9.3364 -4.0733 4.4586 44 1 8.1413 -4.2191 2.2444 45 1 7.2034 -4.9104 3.5916 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000592010523.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:00:30 Heat of formation + Delta-G solvation = 16.878704 kcal Electronic energy + Delta-G solvation = -26899.333143 eV Core-core repulsion = 22978.438527 eV Total energy + Delta-G solvation = -3920.894616 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.141 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -42.46281 -41.38007 -38.88960 -37.43022 -36.33514 -35.69481 -34.24381 -33.70739 -31.96005 -31.18389 -30.10578 -28.89441 -26.51702 -25.89750 -24.02715 -23.52123 -22.38270 -21.49568 -21.40602 -20.45201 -19.18507 -18.40105 -18.06107 -17.42996 -16.75451 -16.57087 -16.51259 -15.75900 -15.51748 -15.43806 -15.34217 -15.08639 -14.78328 -14.57101 -14.35184 -14.12096 -13.88011 -13.86163 -13.48759 -13.39430 -13.28490 -13.01612 -12.68962 -12.61640 -12.50195 -12.44102 -12.30707 -12.09585 -11.76400 -11.54125 -11.37707 -11.28173 -11.00927 -10.79685 -10.56023 -10.50878 -10.28751 -9.49166 -9.44836 -8.15427 -6.24036 0.56133 0.98157 1.12335 1.40748 1.42052 1.54260 1.71942 1.88420 2.11371 2.43621 2.95588 3.18347 3.31618 3.55914 3.92264 3.99006 4.03339 4.09473 4.23484 4.25071 4.43830 4.45162 4.46867 4.49305 4.53944 4.69813 4.72914 4.76365 4.83476 4.92016 5.00843 5.08214 5.09918 5.32099 5.34345 5.36411 5.41640 5.56254 5.62047 5.83309 5.83585 5.91792 5.95772 6.32005 6.37955 6.91040 6.93049 7.44327 7.50644 8.96580 Molecular weight = 340.14amu Principal moments of inertia in cm(-1) A = 0.019602 B = 0.002179 C = 0.002135 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1428.100980 B =12848.583156 C =13114.267464 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.090 3.910 2 N -0.358 5.358 3 C 0.090 3.910 4 C -0.197 4.197 5 Cl -0.042 7.042 6 C 0.063 3.937 7 C 0.225 3.775 8 N -0.728 5.728 9 C 0.709 3.291 10 O -0.631 6.631 11 N -0.624 5.624 12 C 0.120 3.880 13 C -0.123 4.123 14 C -0.072 4.072 15 C 0.033 3.967 16 C -0.525 4.525 17 H 0.064 0.936 18 C -0.004 4.004 19 N -0.936 5.936 20 Si 0.958 3.042 21 H -0.260 1.260 22 H -0.284 1.284 23 H -0.280 1.280 24 C -0.110 4.110 25 C 0.137 3.863 26 N -0.290 5.290 27 H 0.094 0.906 28 H 0.094 0.906 29 H 0.125 0.875 30 H 0.225 0.775 31 H 0.081 0.919 32 H 0.077 0.923 33 H 0.406 0.594 34 H 0.088 0.912 35 H 0.093 0.907 36 H 0.048 0.952 37 H 0.081 0.919 38 H 0.065 0.935 39 H -0.018 1.018 40 H -0.008 1.008 41 H 0.260 0.740 42 H 0.038 0.962 43 H 0.069 0.931 44 H 0.078 0.922 45 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.868 6.713 -17.680 32.044 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.048 4.048 2 N -0.140 5.140 3 C -0.058 4.058 4 C -0.236 4.236 5 Cl -0.014 7.014 6 C -0.103 4.103 7 C 0.099 3.901 8 N -0.387 5.387 9 C 0.410 3.590 10 O -0.512 6.512 11 N -0.360 5.360 12 C -0.002 4.002 13 C -0.162 4.162 14 C -0.090 4.090 15 C -0.004 4.004 16 C -0.564 4.564 17 H 0.082 0.918 18 C -0.201 4.201 19 N -0.577 5.577 20 Si 0.784 3.216 21 H -0.184 1.184 22 H -0.210 1.210 23 H -0.206 1.206 24 C -0.149 4.149 25 C 0.014 3.986 26 N -0.115 5.115 27 H 0.113 0.887 28 H 0.113 0.887 29 H 0.143 0.857 30 H 0.241 0.759 31 H 0.099 0.901 32 H 0.095 0.905 33 H 0.244 0.756 34 H 0.106 0.894 35 H 0.111 0.889 36 H 0.066 0.934 37 H 0.099 0.901 38 H 0.084 0.916 39 H 0.001 0.999 40 H 0.010 0.990 41 H 0.069 0.931 42 H 0.056 0.944 43 H 0.088 0.912 44 H 0.096 0.904 45 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges -26.173 5.590 -18.256 32.397 hybrid contribution 1.604 0.752 0.952 2.012 sum -24.568 6.342 -17.304 30.712 Atomic orbital electron populations 1.22421 0.70237 1.06760 1.05425 1.48763 1.08307 1.02677 1.54239 1.22843 0.88510 0.95542 0.98945 1.20874 0.89800 0.90777 1.22184 1.98360 1.38199 1.67073 1.97797 1.21972 0.93333 0.92580 1.02424 1.19188 0.90805 0.97177 0.82942 1.44989 1.31300 1.53725 1.08705 1.15835 0.81011 0.79095 0.83021 1.90868 1.53927 1.62082 1.44369 1.47406 1.36591 1.47895 1.04094 1.21748 0.93305 0.98700 0.86461 1.21928 0.97127 0.98017 0.99102 1.21021 0.95400 0.97769 0.94844 1.19023 0.93497 0.94799 0.93102 1.21715 1.14866 0.96881 1.22896 0.91793 1.25944 0.99737 0.97427 0.96996 1.70107 1.35517 1.20283 1.31809 0.85491 0.78440 0.79654 0.78043 1.18382 1.20967 1.20601 1.21767 0.97819 1.00227 0.95067 1.21527 0.87134 0.90966 0.98969 1.77451 1.00523 1.09475 1.24011 0.88744 0.88737 0.85691 0.75890 0.90064 0.90463 0.75622 0.89417 0.88941 0.93356 0.90066 0.91623 0.99916 0.98974 0.93073 0.94354 0.91215 0.90398 0.90052 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 0.18 11.47 127.77 1.47 1.65 16 2 N -0.36 -4.14 4.02 -369.44 -1.48 -5.62 16 3 C 0.09 0.95 11.47 83.54 0.96 1.91 16 4 C -0.20 -3.37 6.64 22.02 0.15 -3.22 16 5 Cl -0.04 -0.80 29.01 -2.72 -0.08 -0.88 16 6 C 0.06 1.26 6.59 43.11 0.28 1.54 16 7 C 0.22 5.23 6.10 85.63 0.52 5.75 16 8 N -0.73 -17.88 5.46 -482.30 -2.63 -20.52 16 9 C 0.71 22.32 8.30 179.05 1.49 23.81 16 10 O -0.63 -24.58 15.79 -3.99 -0.06 -24.64 16 11 N -0.62 -18.46 2.98 -836.18 -2.50 -20.95 16 12 C 0.12 2.92 6.38 86.36 0.55 3.47 16 13 C -0.12 -3.85 5.36 30.67 0.16 -3.69 16 14 C -0.07 -2.79 2.10 -10.77 -0.02 -2.82 16 15 C 0.03 1.69 4.45 29.85 0.13 1.83 16 16 C -0.53 -29.26 8.39 25.60 0.21 -29.05 16 17 H 0.06 3.40 7.05 -2.91 -0.02 3.38 16 18 C 0.00 -0.23 5.46 84.66 0.46 0.23 16 19 N -0.94 -57.34 13.29 21.45 0.28 -57.06 16 20 Si 0.96 44.58 29.54 68.60 2.03 46.61 16 21 H -0.26 -11.46 7.11 99.48 0.71 -10.75 16 22 H -0.28 -13.06 7.11 99.48 0.71 -12.35 16 23 H -0.28 -12.73 7.11 99.48 0.71 -12.02 16 24 C -0.11 -4.17 5.19 30.67 0.16 -4.01 16 25 C 0.14 4.36 6.45 86.31 0.56 4.92 16 26 N -0.29 -5.55 12.57 -47.35 -0.60 -6.15 16 27 H 0.09 -0.02 8.14 -2.39 -0.02 -0.04 16 28 H 0.09 0.25 8.14 -2.39 -0.02 0.23 16 29 H 0.12 -0.51 8.14 -2.39 -0.02 -0.53 16 30 H 0.22 0.46 8.06 -2.91 -0.02 0.43 16 31 H 0.08 2.03 8.00 -2.39 -0.02 2.01 16 32 H 0.08 1.87 8.14 -2.39 -0.02 1.85 16 33 H 0.41 8.42 5.95 -92.70 -0.55 7.87 16 34 H 0.09 1.85 8.14 -2.38 -0.02 1.83 16 35 H 0.09 1.77 5.64 -2.38 -0.01 1.75 16 36 H 0.05 1.64 8.14 -2.38 -0.02 1.62 16 37 H 0.08 2.37 8.14 -2.38 -0.02 2.35 16 38 H 0.07 2.47 8.14 -2.39 -0.02 2.45 16 39 H -0.02 -1.01 8.14 -2.39 -0.02 -1.03 16 40 H -0.01 -0.45 8.14 -2.39 -0.02 -0.47 16 41 H 0.26 15.04 8.31 -92.70 -0.77 14.27 16 42 H 0.04 1.57 8.14 -2.39 -0.02 1.55 16 43 H 0.07 2.80 6.91 -2.38 -0.02 2.79 16 44 H 0.08 2.65 7.01 -2.39 -0.02 2.63 16 45 H 0.08 2.30 8.14 -2.39 -0.02 2.28 16 Total: -1.00 -77.28 382.97 2.50 -74.78 By element: Atomic # 1 Polarization: 11.65 SS G_CDS: 0.46 Total: 12.11 kcal Atomic # 6 Polarization: -4.76 SS G_CDS: 7.08 Total: 2.33 kcal Atomic # 7 Polarization: -103.37 SS G_CDS: -6.92 Total: -110.30 kcal Atomic # 8 Polarization: -24.58 SS G_CDS: -0.06 Total: -24.64 kcal Atomic # 14 Polarization: 44.58 SS G_CDS: 2.03 Total: 46.61 kcal Atomic # 17 Polarization: -0.80 SS G_CDS: -0.08 Total: -0.88 kcal Total: -77.28 2.50 -74.78 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000592010523.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 91.660 kcal (2) G-P(sol) polarization free energy of solvation -77.281 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 14.379 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.499 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.782 kcal (6) G-S(sol) free energy of system = (1) + (5) 16.879 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds