Wall clock time and date at job start Sat Apr 11 2020 06:00:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86799 * 119.99505 * 2 1 4 4 H 1.48501 * 109.47175 * 270.00017 * 3 2 1 5 5 H 1.48499 * 109.47172 * 30.00286 * 3 2 1 6 6 H 1.48503 * 109.47061 * 150.00158 * 3 2 1 7 7 C 1.37879 * 120.00040 * 180.02562 * 2 1 3 8 8 H 1.07996 * 119.99313 * 179.97438 * 7 2 1 9 9 C 1.50693 * 120.00148 * 0.02562 * 7 2 1 10 10 O 1.42898 * 110.63949 * 298.30889 * 9 7 2 11 11 C 1.55160 * 110.72183 * 61.45226 * 9 7 2 12 12 C 1.54912 * 101.57735 * 154.04318 * 11 9 7 13 13 N 1.47421 * 104.83456 * 322.98976 * 12 11 9 14 14 C 1.34780 * 125.64922 * 204.09453 * 13 12 11 15 15 O 1.21283 * 119.99982 * 180.02562 * 14 13 12 16 16 C 1.50702 * 119.99969 * 0.02562 * 14 13 12 17 17 C 1.52990 * 109.47068 * 179.97438 * 16 14 13 18 18 C 1.50702 * 109.47068 * 179.97438 * 17 16 14 19 19 C 1.39328 * 120.03093 * 90.00235 * 18 17 16 20 20 N 1.31084 * 121.74815 * 180.02562 * 19 18 17 21 21 C 1.33686 * 121.32434 * 0.02562 * 20 19 18 22 22 C 1.40594 * 121.07587 * 179.97438 * 21 20 19 23 23 C 1.36068 * 119.75012 * 180.02562 * 22 21 20 24 24 C 1.39360 * 121.06418 * 0.06334 * 23 22 21 25 25 C 1.36144 * 120.87017 * 359.95697 * 24 23 22 26 26 C 1.40426 * 119.61219 * 0.02562 * 25 24 23 27 27 C 1.36581 * 120.03476 * 270.02460 * 18 17 16 28 28 C 1.47025 * 108.70331 * 24.35775 * 13 12 11 29 29 H 0.96992 * 120.00124 * 359.97438 * 1 2 3 30 30 H 0.96708 * 113.99842 * 61.68952 * 10 9 7 31 31 H 1.08996 * 111.00129 * 35.96714 * 11 9 7 32 32 H 1.08999 * 111.00538 * 272.11516 * 11 9 7 33 33 H 1.09008 * 110.36265 * 204.14899 * 12 11 9 34 34 H 1.09004 * 110.46074 * 81.88007 * 12 11 9 35 35 H 1.09004 * 109.47086 * 60.00090 * 16 14 13 36 36 H 1.08997 * 109.47122 * 300.00737 * 16 14 13 37 37 H 1.09000 * 109.47261 * 60.00595 * 17 16 14 38 38 H 1.09005 * 109.47672 * 300.00129 * 17 16 14 39 39 H 1.07999 * 119.13012 * 0.02641 * 19 18 17 40 40 H 1.08001 * 120.12077 * 0.02562 * 22 21 20 41 41 H 1.08000 * 119.47163 * 180.02562 * 23 22 21 42 42 H 1.07999 * 119.56800 * 179.97438 * 24 23 22 43 43 H 1.07999 * 120.19117 * 180.02562 * 25 24 23 44 44 H 1.08000 * 120.91919 * 359.97438 * 27 18 17 45 45 H 1.09002 * 109.88051 * 118.12750 * 28 13 12 46 46 H 1.08998 * 109.88124 * 239.29433 * 28 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 2.4965 2.0465 -1.4001 5 1 1.4464 2.6527 0.7001 6 1 3.5467 1.4403 0.7000 7 6 2.0046 -1.1941 -0.0005 8 1 3.0846 -1.1939 -0.0010 9 6 1.2512 -2.4991 -0.0017 10 8 0.4497 -2.6191 1.1752 11 6 0.3766 -2.6270 -1.2769 12 6 0.2683 -4.1650 -1.4267 13 7 1.5880 -4.6781 -1.0161 14 6 2.1253 -5.8551 -1.3935 15 8 3.2236 -6.1768 -0.9920 16 6 1.3615 -6.7715 -2.3143 17 6 2.1894 -8.0294 -2.5839 18 6 1.4252 -8.9460 -3.5042 19 6 1.5770 -8.8331 -4.8846 20 7 0.9287 -9.6122 -5.7158 21 6 0.0888 -10.5539 -5.2742 22 6 -0.6042 -11.3863 -6.1704 23 6 -1.4531 -12.3358 -5.6913 24 6 -1.6505 -12.4986 -4.3214 25 6 -0.9974 -11.7111 -3.4231 26 6 -0.1135 -10.7211 -3.8819 27 6 0.5829 -9.8880 -2.9860 28 6 2.2182 -3.6959 -0.1218 29 1 -0.4850 0.8400 0.0004 30 1 -0.2285 -1.9350 1.2607 31 1 0.8757 -2.1846 -2.1389 32 1 -0.6054 -2.1793 -1.1237 33 1 0.0635 -4.4316 -2.4637 34 1 -0.5113 -4.5576 -0.7738 35 1 1.1638 -6.2584 -3.2555 36 1 0.4169 -7.0507 -1.8475 37 1 2.3874 -8.5427 -1.6429 38 1 3.1338 -7.7498 -3.0509 39 1 2.2466 -8.0837 -5.2802 40 1 -0.4634 -11.2726 -7.2352 41 1 -1.9828 -12.9731 -6.3838 42 1 -2.3302 -13.2596 -3.9677 43 1 -1.1583 -11.8471 -2.3639 44 1 0.4532 -9.9895 -1.9186 45 1 2.3841 -4.1409 0.8593 46 1 3.1659 -3.3634 -0.5454 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000592850273.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:00:43 Heat of formation + Delta-G solvation = -40.173936 kcal Electronic energy + Delta-G solvation = -28137.500545 eV Core-core repulsion = 24184.272039 eV Total energy + Delta-G solvation = -3953.228506 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.157 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -41.12456 -39.58253 -37.75902 -37.24789 -34.71072 -34.34864 -32.75811 -32.25114 -30.52359 -30.18181 -29.32434 -28.28689 -25.80455 -24.66188 -24.27773 -22.57608 -22.34648 -21.77656 -19.74867 -18.70026 -18.31132 -17.60017 -17.31327 -16.87731 -16.30822 -15.66770 -15.18553 -14.99682 -14.93365 -14.69911 -14.55808 -14.26473 -14.04340 -13.92589 -13.36250 -13.26532 -13.05785 -12.81052 -12.59763 -12.13438 -12.07642 -11.89666 -11.82206 -11.69827 -11.47765 -11.39941 -11.38099 -11.09780 -10.91496 -10.68467 -10.61933 -10.51558 -10.15112 -9.72112 -9.52565 -9.35625 -8.92907 -8.70910 -8.51997 -8.26530 -8.05784 -6.32168 -4.39599 0.12262 0.53589 1.72799 2.62459 3.01107 3.17764 3.25512 3.29626 3.48597 3.85054 4.03005 4.24226 4.30191 4.43095 4.50959 4.64551 4.71685 4.84048 4.88616 4.96081 5.01982 5.04183 5.16021 5.25614 5.45860 5.50293 5.56393 5.59614 5.69905 5.73295 5.79162 5.87471 5.95058 5.97166 6.03251 6.08947 6.16663 6.19270 6.29113 6.41404 6.56395 6.65180 6.86359 6.92454 7.25454 7.31125 7.66328 7.69825 7.98588 8.07223 8.56877 8.63565 9.26440 9.35490 10.75411 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.023859 B = 0.001957 C = 0.001940 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1173.275172 B =14306.464277 C =14428.164785 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.896 5.896 2 C 0.072 3.928 3 Si 0.903 3.097 4 H -0.279 1.279 5 H -0.284 1.284 6 H -0.272 1.272 7 C -0.534 4.534 8 H 0.064 0.936 9 C 0.246 3.754 10 O -0.586 6.586 11 C -0.135 4.135 12 C 0.094 3.906 13 N -0.608 5.608 14 C 0.521 3.479 15 O -0.556 6.556 16 C -0.130 4.130 17 C -0.061 4.061 18 C -0.130 4.130 19 C 0.141 3.859 20 N -0.474 5.474 21 C 0.120 3.880 22 C -0.092 4.092 23 C -0.105 4.105 24 C -0.119 4.119 25 C -0.096 4.096 26 C -0.099 4.099 27 C -0.057 4.057 28 C 0.122 3.878 29 H 0.268 0.732 30 H 0.382 0.618 31 H 0.067 0.933 32 H 0.088 0.912 33 H 0.060 0.940 34 H 0.062 0.938 35 H 0.092 0.908 36 H 0.090 0.910 37 H 0.084 0.916 38 H 0.086 0.914 39 H 0.161 0.839 40 H 0.134 0.866 41 H 0.128 0.872 42 H 0.126 0.874 43 H 0.130 0.870 44 H 0.140 0.860 45 H 0.060 0.940 46 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.068 -20.589 -9.620 23.284 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.536 5.536 2 C -0.131 4.131 3 Si 0.730 3.270 4 H -0.205 1.205 5 H -0.210 1.210 6 H -0.197 1.197 7 C -0.572 4.572 8 H 0.082 0.918 9 C 0.206 3.794 10 O -0.395 6.395 11 C -0.173 4.173 12 C -0.029 4.029 13 N -0.341 5.341 14 C 0.309 3.691 15 O -0.436 6.436 16 C -0.170 4.170 17 C -0.100 4.100 18 C -0.132 4.132 19 C -0.032 4.032 20 N -0.181 5.181 21 C -0.001 4.001 22 C -0.111 4.111 23 C -0.125 4.125 24 C -0.137 4.137 25 C -0.114 4.114 26 C -0.101 4.101 27 C -0.083 4.083 28 C 0.001 3.999 29 H 0.078 0.922 30 H 0.232 0.768 31 H 0.086 0.914 32 H 0.107 0.893 33 H 0.079 0.921 34 H 0.081 0.919 35 H 0.111 0.889 36 H 0.109 0.891 37 H 0.102 0.898 38 H 0.105 0.895 39 H 0.178 0.822 40 H 0.152 0.848 41 H 0.146 0.854 42 H 0.144 0.856 43 H 0.148 0.852 44 H 0.158 0.842 45 H 0.079 0.921 46 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -4.187 -21.213 -10.274 23.939 hybrid contribution -0.235 1.432 0.747 1.632 sum -4.423 -19.782 -9.527 22.397 Atomic orbital electron populations 1.69689 1.05945 1.27669 1.50248 1.24989 0.95044 0.99545 0.93473 0.86410 0.79916 0.82376 0.78256 1.20470 1.21010 1.19671 1.21501 0.93695 0.90175 1.51876 0.91765 1.19482 0.86969 0.90695 0.82233 1.86139 1.51813 1.56463 1.45058 1.23302 1.02914 0.90146 1.00982 1.22525 0.84340 0.97644 0.98349 1.48680 1.19542 1.18183 1.47649 1.20146 0.86266 0.80938 0.81753 1.90668 1.20999 1.74297 1.57626 1.21611 0.99774 0.95377 1.00238 1.20313 0.97662 0.93128 0.98855 1.20729 0.98741 0.97977 0.95772 1.22978 0.95331 0.95647 0.89225 1.68079 1.06756 1.04521 1.38783 1.18926 0.95593 0.94842 0.90778 1.20811 0.95971 0.94617 0.99689 1.20903 0.97979 0.97933 0.95716 1.20926 0.99872 0.99678 0.93246 1.21023 0.95706 0.94589 1.00126 1.18864 0.99099 0.98096 0.94051 1.21421 0.93699 0.93196 1.00006 1.22065 0.96730 0.88540 0.92605 0.92203 0.76780 0.91423 0.89332 0.92131 0.91944 0.88928 0.89121 0.89767 0.89507 0.82199 0.84823 0.85386 0.85571 0.85221 0.84233 0.92122 0.90995 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -22.57 10.67 55.43 0.59 -21.98 16 2 C 0.07 1.82 5.28 -17.82 -0.09 1.73 16 3 Si 0.90 20.01 29.54 -169.99 -5.02 14.99 16 4 H -0.28 -6.15 7.11 56.52 0.40 -5.74 16 5 H -0.28 -6.27 7.11 56.52 0.40 -5.87 16 6 H -0.27 -6.08 7.11 56.52 0.40 -5.68 16 7 C -0.53 -13.74 8.23 -34.44 -0.28 -14.02 16 8 H 0.06 1.67 7.58 -52.49 -0.40 1.27 16 9 C 0.25 5.80 0.84 -89.93 -0.08 5.73 16 10 O -0.59 -14.37 13.06 -35.23 -0.46 -14.83 16 11 C -0.13 -2.81 5.47 -24.58 -0.13 -2.95 16 12 C 0.09 1.62 6.68 -2.53 -0.02 1.61 16 13 N -0.61 -11.50 3.33 -170.51 -0.57 -12.06 16 14 C 0.52 9.03 7.85 -10.98 -0.09 8.94 16 15 O -0.56 -11.36 16.31 5.55 0.09 -11.27 16 16 C -0.13 -1.59 4.69 -27.89 -0.13 -1.72 16 17 C -0.06 -0.67 4.63 -27.89 -0.13 -0.80 16 18 C -0.13 -1.33 5.12 -104.81 -0.54 -1.87 16 19 C 0.14 1.51 10.81 -17.47 -0.19 1.32 16 20 N -0.47 -5.77 10.34 -10.98 -0.11 -5.89 16 21 C 0.12 1.37 6.60 -84.86 -0.56 0.81 16 22 C -0.09 -0.86 9.98 -39.47 -0.39 -1.26 16 23 C -0.11 -0.78 9.94 -39.94 -0.40 -1.17 16 24 C -0.12 -0.85 9.96 -39.92 -0.40 -1.25 16 25 C -0.10 -0.78 9.78 -39.51 -0.39 -1.17 16 26 C -0.10 -1.03 5.74 -106.80 -0.61 -1.64 16 27 C -0.06 -0.56 9.54 -39.22 -0.37 -0.93 16 28 C 0.12 2.70 6.23 -3.06 -0.02 2.68 16 29 H 0.27 6.49 8.31 -40.82 -0.34 6.15 16 30 H 0.38 9.35 7.46 45.56 0.34 9.69 16 31 H 0.07 1.46 8.04 -51.93 -0.42 1.04 16 32 H 0.09 1.92 7.53 -51.93 -0.39 1.53 16 33 H 0.06 0.87 7.48 -51.92 -0.39 0.48 16 34 H 0.06 1.05 8.14 -51.93 -0.42 0.62 16 35 H 0.09 1.02 7.85 -51.93 -0.41 0.61 16 36 H 0.09 1.00 8.14 -51.93 -0.42 0.58 16 37 H 0.08 0.95 8.04 -51.93 -0.42 0.54 16 38 H 0.09 0.97 8.05 -51.93 -0.42 0.55 16 39 H 0.16 1.38 8.06 -52.49 -0.42 0.95 16 40 H 0.13 1.09 8.06 -52.49 -0.42 0.66 16 41 H 0.13 0.60 8.06 -52.49 -0.42 0.18 16 42 H 0.13 0.58 8.06 -52.49 -0.42 0.16 16 43 H 0.13 0.78 8.06 -52.49 -0.42 0.36 16 44 H 0.14 1.09 8.06 -52.49 -0.42 0.66 16 45 H 0.06 1.39 8.07 -51.93 -0.42 0.98 16 46 H 0.07 1.62 7.67 -51.93 -0.40 1.22 16 LS Contribution 382.64 15.07 5.77 5.77 Total: -1.00 -29.93 382.64 -10.36 -40.29 By element: Atomic # 1 Polarization: 16.78 SS G_CDS: -5.83 Total: 10.94 kcal Atomic # 6 Polarization: -1.16 SS G_CDS: -4.82 Total: -5.97 kcal Atomic # 7 Polarization: -39.84 SS G_CDS: -0.09 Total: -39.93 kcal Atomic # 8 Polarization: -25.73 SS G_CDS: -0.37 Total: -26.10 kcal Atomic # 14 Polarization: 20.01 SS G_CDS: -5.02 Total: 14.99 kcal Total LS contribution 5.77 Total: 5.77 kcal Total: -29.93 -10.36 -40.29 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000592850273.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.118 kcal (2) G-P(sol) polarization free energy of solvation -29.929 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.811 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.363 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.292 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.174 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds