Wall clock time and date at job start Sat Apr 11 2020 06:00:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86799 * 119.99505 * 2 1 4 4 H 1.48501 * 109.47175 * 270.00017 * 3 2 1 5 5 H 1.48499 * 109.47172 * 30.00286 * 3 2 1 6 6 H 1.48503 * 109.47061 * 150.00158 * 3 2 1 7 7 C 1.37879 * 120.00040 * 180.02562 * 2 1 3 8 8 H 1.07996 * 119.99313 * 179.97438 * 7 2 1 9 9 C 1.50693 * 120.00148 * 0.02562 * 7 2 1 10 10 O 1.42898 * 110.63949 * 298.30889 * 9 7 2 11 11 C 1.55160 * 110.72183 * 61.45226 * 9 7 2 12 12 C 1.54912 * 101.57735 * 154.04318 * 11 9 7 13 13 N 1.47421 * 104.83456 * 322.98976 * 12 11 9 14 14 C 1.34780 * 125.64922 * 204.09453 * 13 12 11 15 15 O 1.21283 * 119.99982 * 180.02562 * 14 13 12 16 16 C 1.50702 * 119.99969 * 0.02562 * 14 13 12 17 17 C 1.52990 * 109.47068 * 179.97438 * 16 14 13 18 18 C 1.50702 * 109.47068 * 179.97438 * 17 16 14 19 19 C 1.39328 * 120.03093 * 90.00235 * 18 17 16 20 20 N 1.31084 * 121.74815 * 180.02562 * 19 18 17 21 21 C 1.33686 * 121.32434 * 0.02562 * 20 19 18 22 22 C 1.40594 * 121.07587 * 179.97438 * 21 20 19 23 23 C 1.36068 * 119.75012 * 180.02562 * 22 21 20 24 24 C 1.39360 * 121.06418 * 0.06334 * 23 22 21 25 25 C 1.36144 * 120.87017 * 359.95697 * 24 23 22 26 26 C 1.40426 * 119.61219 * 0.02562 * 25 24 23 27 27 C 1.36581 * 120.03476 * 270.02460 * 18 17 16 28 28 C 1.47025 * 108.70331 * 24.35775 * 13 12 11 29 29 H 0.96992 * 120.00124 * 359.97438 * 1 2 3 30 30 H 0.96708 * 113.99842 * 61.68952 * 10 9 7 31 31 H 1.08996 * 111.00129 * 35.96714 * 11 9 7 32 32 H 1.08999 * 111.00538 * 272.11516 * 11 9 7 33 33 H 1.09008 * 110.36265 * 204.14899 * 12 11 9 34 34 H 1.09004 * 110.46074 * 81.88007 * 12 11 9 35 35 H 1.09004 * 109.47086 * 60.00090 * 16 14 13 36 36 H 1.08997 * 109.47122 * 300.00737 * 16 14 13 37 37 H 1.09000 * 109.47261 * 60.00595 * 17 16 14 38 38 H 1.09005 * 109.47672 * 300.00129 * 17 16 14 39 39 H 1.07999 * 119.13012 * 0.02641 * 19 18 17 40 40 H 1.08001 * 120.12077 * 0.02562 * 22 21 20 41 41 H 1.08000 * 119.47163 * 180.02562 * 23 22 21 42 42 H 1.07999 * 119.56800 * 179.97438 * 24 23 22 43 43 H 1.07999 * 120.19117 * 180.02562 * 25 24 23 44 44 H 1.08000 * 120.91919 * 359.97438 * 27 18 17 45 45 H 1.09002 * 109.88051 * 118.12750 * 28 13 12 46 46 H 1.08998 * 109.88124 * 239.29433 * 28 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 2.4965 2.0465 -1.4001 5 1 1.4464 2.6527 0.7001 6 1 3.5467 1.4403 0.7000 7 6 2.0046 -1.1941 -0.0005 8 1 3.0846 -1.1939 -0.0010 9 6 1.2512 -2.4991 -0.0017 10 8 0.4497 -2.6191 1.1752 11 6 0.3766 -2.6270 -1.2769 12 6 0.2683 -4.1650 -1.4267 13 7 1.5880 -4.6781 -1.0161 14 6 2.1253 -5.8551 -1.3935 15 8 3.2236 -6.1768 -0.9920 16 6 1.3615 -6.7715 -2.3143 17 6 2.1894 -8.0294 -2.5839 18 6 1.4252 -8.9460 -3.5042 19 6 1.5770 -8.8331 -4.8846 20 7 0.9287 -9.6122 -5.7158 21 6 0.0888 -10.5539 -5.2742 22 6 -0.6042 -11.3863 -6.1704 23 6 -1.4531 -12.3358 -5.6913 24 6 -1.6505 -12.4986 -4.3214 25 6 -0.9974 -11.7111 -3.4231 26 6 -0.1135 -10.7211 -3.8819 27 6 0.5829 -9.8880 -2.9860 28 6 2.2182 -3.6959 -0.1218 29 1 -0.4850 0.8400 0.0004 30 1 -0.2285 -1.9350 1.2607 31 1 0.8757 -2.1846 -2.1389 32 1 -0.6054 -2.1793 -1.1237 33 1 0.0635 -4.4316 -2.4637 34 1 -0.5113 -4.5576 -0.7738 35 1 1.1638 -6.2584 -3.2555 36 1 0.4169 -7.0507 -1.8475 37 1 2.3874 -8.5427 -1.6429 38 1 3.1338 -7.7498 -3.0509 39 1 2.2466 -8.0837 -5.2802 40 1 -0.4634 -11.2726 -7.2352 41 1 -1.9828 -12.9731 -6.3838 42 1 -2.3302 -13.2596 -3.9677 43 1 -1.1583 -11.8471 -2.3639 44 1 0.4532 -9.9895 -1.9186 45 1 2.3841 -4.1409 0.8593 46 1 3.1659 -3.3634 -0.5454 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000592850273.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:00:42 Heat of formation + Delta-G solvation = -58.106504 kcal Electronic energy + Delta-G solvation = -28138.278160 eV Core-core repulsion = 24184.272039 eV Total energy + Delta-G solvation = -3954.006121 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.157 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -41.83465 -41.04186 -39.10207 -38.21913 -36.08750 -35.54560 -34.20948 -33.53664 -31.66256 -31.10467 -30.52125 -29.82952 -27.30340 -25.76647 -25.12708 -23.89618 -23.08537 -22.71229 -21.49554 -20.12225 -19.17134 -18.95850 -18.34719 -18.06922 -17.19949 -17.05785 -16.89931 -16.52136 -16.06013 -15.72804 -15.45370 -15.33702 -15.11953 -14.87415 -14.64514 -14.50114 -13.95910 -13.89540 -13.71557 -13.63565 -13.46548 -13.23320 -13.13802 -13.05408 -12.66299 -12.57892 -12.47303 -12.44425 -12.29246 -12.28152 -12.01059 -11.92220 -11.36792 -11.27202 -10.89899 -10.62639 -10.45546 -10.14367 -9.63290 -9.60881 -9.18051 -8.25131 -6.39125 -0.53958 -0.15803 1.04356 1.40572 1.44074 1.52668 1.64344 1.93810 2.11371 2.39586 3.00410 3.13846 3.31824 3.49423 3.68252 3.80057 3.83142 3.90982 3.98647 4.01043 4.10655 4.14419 4.22297 4.33028 4.33426 4.42253 4.48067 4.56896 4.57506 4.60946 4.73821 4.83108 4.86263 4.93327 5.07990 5.14278 5.16622 5.17693 5.25629 5.27939 5.45654 5.47068 5.52632 5.54032 5.63088 5.76424 5.95164 6.08436 6.60399 6.67451 6.92510 7.15958 7.30892 7.40254 8.80697 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.023859 B = 0.001957 C = 0.001940 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1173.275172 B =14306.464277 C =14428.164785 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.904 5.904 2 C 0.038 3.962 3 Si 0.957 3.043 4 H -0.274 1.274 5 H -0.278 1.278 6 H -0.278 1.278 7 C -0.562 4.562 8 H 0.050 0.950 9 C 0.234 3.766 10 O -0.593 6.593 11 C -0.126 4.126 12 C 0.104 3.896 13 N -0.613 5.613 14 C 0.518 3.482 15 O -0.591 6.591 16 C -0.118 4.118 17 C -0.051 4.051 18 C -0.135 4.135 19 C 0.132 3.868 20 N -0.501 5.501 21 C 0.094 3.906 22 C -0.117 4.117 23 C -0.096 4.096 24 C -0.118 4.118 25 C -0.102 4.102 26 C -0.117 4.117 27 C -0.055 4.055 28 C 0.129 3.871 29 H 0.272 0.728 30 H 0.379 0.621 31 H 0.056 0.944 32 H 0.079 0.921 33 H 0.101 0.899 34 H 0.073 0.927 35 H 0.112 0.888 36 H 0.111 0.889 37 H 0.079 0.921 38 H 0.080 0.920 39 H 0.173 0.827 40 H 0.136 0.864 41 H 0.157 0.843 42 H 0.157 0.843 43 H 0.152 0.848 44 H 0.159 0.841 45 H 0.042 0.958 46 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.813 -22.177 -10.389 25.420 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.543 5.543 2 C -0.164 4.164 3 Si 0.783 3.217 4 H -0.199 1.199 5 H -0.203 1.203 6 H -0.203 1.203 7 C -0.601 4.601 8 H 0.068 0.932 9 C 0.194 3.806 10 O -0.402 6.402 11 C -0.165 4.165 12 C -0.018 4.018 13 N -0.346 5.346 14 C 0.309 3.691 15 O -0.473 6.473 16 C -0.157 4.157 17 C -0.089 4.089 18 C -0.137 4.137 19 C -0.041 4.041 20 N -0.209 5.209 21 C -0.027 4.027 22 C -0.135 4.135 23 C -0.115 4.115 24 C -0.136 4.136 25 C -0.121 4.121 26 C -0.119 4.119 27 C -0.081 4.081 28 C 0.005 3.995 29 H 0.081 0.919 30 H 0.229 0.771 31 H 0.075 0.925 32 H 0.097 0.903 33 H 0.119 0.881 34 H 0.091 0.909 35 H 0.130 0.870 36 H 0.130 0.870 37 H 0.098 0.902 38 H 0.099 0.901 39 H 0.190 0.810 40 H 0.154 0.846 41 H 0.174 0.826 42 H 0.174 0.826 43 H 0.170 0.830 44 H 0.177 0.823 45 H 0.061 0.939 46 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -5.951 -22.818 -11.060 26.046 hybrid contribution 0.282 1.840 1.001 2.113 sum -5.670 -20.978 -10.059 23.946 Atomic orbital electron populations 1.69742 1.06450 1.28372 1.49761 1.25569 0.95894 1.01853 0.93086 0.85572 0.78569 0.79255 0.78295 1.19921 1.20346 1.20303 1.21716 0.93364 0.91873 1.53113 0.93203 1.19619 0.87555 0.90433 0.83019 1.86124 1.51827 1.56274 1.45942 1.23078 1.01443 0.93057 0.98938 1.22528 0.83612 0.94652 1.00980 1.48762 1.20036 1.18362 1.47417 1.21106 0.86024 0.80542 0.81462 1.90651 1.22827 1.74889 1.58930 1.21633 0.99776 0.94613 0.99673 1.20166 0.97344 0.92661 0.98735 1.20561 0.99349 0.98475 0.95309 1.23226 0.95447 0.95848 0.89569 1.68075 1.07753 1.05450 1.39595 1.19320 0.96097 0.95309 0.91939 1.21008 0.97114 0.95587 0.99838 1.21294 0.96636 0.96956 0.96629 1.21342 0.99587 0.99723 0.92953 1.21347 0.95133 0.94012 1.01608 1.19105 0.99992 0.99067 0.93727 1.21694 0.92891 0.92501 1.00975 1.21749 0.96233 0.88998 0.92475 0.91900 0.77087 0.92510 0.90254 0.88133 0.90881 0.86950 0.87042 0.90234 0.90102 0.80988 0.84590 0.82575 0.82561 0.83045 0.82307 0.93946 0.92453 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -45.41 10.67 21.45 0.23 -45.18 16 2 C 0.04 1.91 5.28 84.65 0.45 2.35 16 3 Si 0.96 41.09 29.54 68.60 2.03 43.12 16 4 H -0.27 -11.47 7.11 99.48 0.71 -10.77 16 5 H -0.28 -11.60 7.11 99.48 0.71 -10.89 16 6 H -0.28 -12.11 7.11 99.48 0.71 -11.40 16 7 C -0.56 -29.57 8.23 25.60 0.21 -29.35 16 8 H 0.05 2.68 7.58 -2.91 -0.02 2.66 16 9 C 0.23 11.17 0.84 -10.35 -0.01 11.16 16 10 O -0.59 -29.48 13.06 -148.98 -1.95 -31.43 16 11 C -0.13 -5.22 5.47 31.99 0.18 -5.04 16 12 C 0.10 3.37 6.68 86.86 0.58 3.95 16 13 N -0.61 -22.68 3.33 -811.74 -2.70 -25.38 16 14 C 0.52 17.38 7.85 87.66 0.69 18.07 16 15 O -0.59 -24.16 16.31 -3.04 -0.05 -24.21 16 16 C -0.12 -2.58 4.69 29.85 0.14 -2.44 16 17 C -0.05 -1.03 4.63 29.85 0.14 -0.89 16 18 C -0.13 -2.57 5.12 -19.99 -0.10 -2.68 16 19 C 0.13 2.73 10.81 85.07 0.92 3.65 16 20 N -0.50 -12.09 10.34 -188.64 -1.95 -14.05 16 21 C 0.09 2.09 6.60 40.29 0.27 2.36 16 22 C -0.12 -2.08 9.98 22.34 0.22 -1.85 16 23 C -0.10 -1.17 9.94 22.04 0.22 -0.95 16 24 C -0.12 -1.31 9.96 22.05 0.22 -1.09 16 25 C -0.10 -1.41 9.78 22.32 0.22 -1.19 16 26 C -0.12 -2.23 5.74 -21.28 -0.12 -2.36 16 27 C -0.05 -0.97 9.54 22.50 0.21 -0.76 16 28 C 0.13 5.80 6.23 86.73 0.54 6.34 16 29 H 0.27 12.98 8.31 -92.71 -0.77 12.21 16 30 H 0.38 18.83 7.46 -74.05 -0.55 18.28 16 31 H 0.06 2.43 8.04 -2.39 -0.02 2.41 16 32 H 0.08 3.41 7.53 -2.39 -0.02 3.39 16 33 H 0.10 2.49 7.48 -2.38 -0.02 2.48 16 34 H 0.07 2.25 8.14 -2.38 -0.02 2.23 16 35 H 0.11 2.09 7.85 -2.39 -0.02 2.07 16 36 H 0.11 2.06 8.14 -2.39 -0.02 2.04 16 37 H 0.08 1.70 8.04 -2.39 -0.02 1.68 16 38 H 0.08 1.74 8.05 -2.38 -0.02 1.72 16 39 H 0.17 2.86 8.06 -2.91 -0.02 2.84 16 40 H 0.14 2.18 8.06 -2.91 -0.02 2.16 16 41 H 0.16 0.94 8.06 -2.91 -0.02 0.92 16 42 H 0.16 0.76 8.06 -2.91 -0.02 0.73 16 43 H 0.15 1.32 8.06 -2.91 -0.02 1.29 16 44 H 0.16 2.06 8.06 -2.91 -0.02 2.03 16 45 H 0.04 2.02 8.07 -2.39 -0.02 2.00 16 46 H 0.06 2.70 7.67 -2.39 -0.02 2.68 16 Total: -1.00 -66.11 382.64 1.02 -65.08 By element: Atomic # 1 Polarization: 32.32 SS G_CDS: 0.45 Total: 32.76 kcal Atomic # 6 Polarization: -5.68 SS G_CDS: 4.97 Total: -0.72 kcal Atomic # 7 Polarization: -80.19 SS G_CDS: -4.42 Total: -84.61 kcal Atomic # 8 Polarization: -53.65 SS G_CDS: -1.99 Total: -55.64 kcal Atomic # 14 Polarization: 41.09 SS G_CDS: 2.03 Total: 43.12 kcal Total: -66.11 1.02 -65.08 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000592850273.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.977 kcal (2) G-P(sol) polarization free energy of solvation -66.105 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.128 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.022 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.083 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.107 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds