Wall clock time and date at job start Sat Apr 11 2020 06:00:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86808 * 120.00032 * 2 1 4 4 H 1.48492 * 109.47217 * 180.02562 * 3 2 1 5 5 H 1.48501 * 109.46948 * 300.00140 * 3 2 1 6 6 H 1.48496 * 109.47004 * 59.99613 * 3 2 1 7 7 C 1.37876 * 120.00330 * 179.97438 * 2 1 3 8 8 H 1.07997 * 120.00113 * 175.57379 * 7 2 1 9 9 C 1.50706 * 119.99650 * 355.29588 * 7 2 1 10 10 C 1.53006 * 115.54690 * 39.84949 * 9 7 2 11 11 N 1.46501 * 109.46618 * 173.83279 * 10 9 7 12 12 C 1.33883 * 124.19645 * 273.32078 * 11 10 9 13 13 O 1.21541 * 123.79539 * 0.02562 * 12 11 10 14 14 N 1.34719 * 112.40352 * 179.86458 * 12 11 10 15 15 C 1.46725 * 106.40483 * 0.45267 * 14 12 11 16 16 C 1.52681 * 110.60458 * 118.24876 * 15 14 12 17 17 C 1.52777 * 108.61583 * 54.66447 * 16 15 14 18 18 C 1.50626 * 110.63979 * 50.61332 * 17 16 15 19 19 C 1.38943 * 117.66942 * 161.36888 * 18 17 16 20 20 C 1.37924 * 120.58100 * 179.66825 * 19 18 17 21 21 C 1.38267 * 119.76780 * 359.94743 * 20 19 18 22 22 C 1.37931 * 119.75869 * 0.20038 * 21 20 19 23 23 C 1.37655 * 122.70666 * 341.35334 * 18 17 16 24 24 C 1.50703 * 122.57140 * 1.09808 * 23 18 17 25 25 C 1.34930 * 124.19730 * 93.62620 * 11 10 9 26 26 O 1.21225 * 127.27586 * 359.91513 * 25 11 10 27 27 C 1.52992 * 117.50048 * 254.13801 * 9 7 2 28 28 C 1.52999 * 60.00182 * 252.51317 * 27 9 7 29 29 H 0.97000 * 119.99749 * 4.99802 * 1 2 3 30 30 H 1.08994 * 109.46880 * 293.82947 * 10 9 7 31 31 H 1.08997 * 109.47130 * 53.83455 * 10 9 7 32 32 H 0.97002 * 126.79620 * 180.22698 * 14 12 11 33 33 H 1.08993 * 109.61704 * 174.40812 * 16 15 14 34 34 H 1.09006 * 109.61240 * 294.75305 * 16 15 14 35 35 H 1.09003 * 109.24070 * 170.91033 * 17 16 15 36 36 H 1.08997 * 109.24681 * 290.35746 * 17 16 15 37 37 H 1.08007 * 119.70594 * 359.69198 * 19 18 17 38 38 H 1.08000 * 120.11409 * 179.97438 * 20 19 18 39 39 H 1.07997 * 120.11564 * 180.17837 * 21 20 19 40 40 H 1.07998 * 119.72835 * 179.97438 * 22 21 20 41 41 H 1.09000 * 109.21283 * 223.30283 * 24 23 18 42 42 H 1.09002 * 109.21389 * 103.98058 * 24 23 18 43 43 H 1.09004 * 117.49742 * 0.02562 * 27 9 7 44 44 H 1.09006 * 117.50187 * 145.01997 * 27 9 7 45 45 H 1.09000 * 117.49865 * 252.51426 * 28 27 9 46 46 H 1.09002 * 117.49994 * 107.49065 * 28 27 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 3.7091 1.3465 -0.0006 5 1 1.8904 2.3965 -1.2125 6 1 1.8904 2.3965 1.2124 7 6 2.0046 -1.1940 0.0005 8 1 3.0822 -1.1954 -0.0716 9 6 1.2549 -2.4969 0.1082 10 6 -0.0525 -2.5732 -0.6831 11 7 -0.5919 -3.9331 -0.6048 12 6 -0.2532 -4.9259 -1.4367 13 8 0.5414 -4.8029 -2.3481 14 7 -0.8896 -6.0776 -1.1476 15 6 -1.7529 -5.7960 0.0049 16 6 -3.2202 -6.0125 -0.3573 17 6 -3.3820 -7.4267 -0.9123 18 6 -2.7562 -8.4357 0.0147 19 6 -3.1441 -9.7631 -0.1198 20 6 -2.6041 -10.7377 0.6931 21 6 -1.6677 -10.3923 1.6499 22 6 -1.2833 -9.0748 1.7874 23 6 -1.8295 -8.0913 0.9726 24 6 -1.3794 -6.6699 1.1920 25 6 -1.4960 -4.3387 0.3109 26 8 -1.9968 -3.6744 1.1926 27 6 1.3168 -3.2393 1.4444 28 6 2.0807 -3.7788 0.2335 29 1 -0.4850 0.8369 -0.0732 30 1 -0.7730 -1.8718 -0.2626 31 1 0.1381 -2.3173 -1.7253 32 1 -0.7980 -6.9244 -1.6118 33 1 -3.8380 -5.8960 0.5331 34 1 -3.5226 -5.2845 -1.1101 35 1 -4.4432 -7.6501 -1.0227 36 1 -2.8987 -7.4875 -1.8873 37 1 -3.8746 -10.0341 -0.8678 38 1 -2.9113 -11.7672 0.5822 39 1 -1.2391 -11.1514 2.2875 40 1 -0.5521 -8.8055 2.5353 41 1 -0.2975 -6.6526 1.3238 42 1 -1.8558 -6.2773 2.0904 43 1 1.8995 -2.7852 2.2460 44 1 0.4260 -3.7823 1.7604 45 1 1.6923 -4.6766 -0.2473 46 1 3.1662 -3.6798 0.2382 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000596238953.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:00:51 Heat of formation + Delta-G solvation = -6.596820 kcal Electronic energy + Delta-G solvation = -30684.860638 eV Core-core repulsion = 26733.088145 eV Total energy + Delta-G solvation = -3951.772493 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.157 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -43.84494 -40.80722 -39.64771 -38.76192 -37.63288 -36.11675 -34.31532 -34.04039 -33.34723 -30.86067 -29.84626 -28.78506 -27.54533 -25.52135 -24.58720 -23.50841 -23.08684 -22.87432 -22.07117 -20.88781 -20.29871 -18.86767 -18.68933 -17.78703 -17.52414 -17.05387 -16.87199 -16.73592 -16.30865 -16.04985 -15.71117 -15.58160 -15.25310 -15.23966 -15.09533 -14.60008 -14.28546 -14.02736 -13.92612 -13.85510 -13.55495 -13.29902 -12.99622 -12.87540 -12.69632 -12.67394 -12.43621 -12.35612 -12.17946 -12.05936 -11.91125 -11.72677 -11.65809 -11.14042 -10.96080 -10.83726 -10.57861 -10.34516 -10.16632 -9.62115 -9.45720 -8.15053 -6.30619 0.45193 0.51210 0.59216 1.29846 1.41990 1.44378 1.55778 2.01114 2.13247 2.38840 2.86734 2.87160 2.95087 3.40317 3.42951 3.48598 3.79316 3.97690 4.00541 4.13335 4.18130 4.24737 4.33052 4.38650 4.42234 4.46050 4.51394 4.60156 4.62882 4.72862 4.78138 4.79794 4.84858 4.89739 4.95291 5.05264 5.08915 5.17317 5.21021 5.25172 5.39628 5.54607 5.62339 5.68165 5.72899 5.77447 5.81443 6.15533 6.20641 6.25067 6.44088 6.71297 7.14606 7.34592 8.85411 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.023859 B = 0.003158 C = 0.003098 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1173.273043 B = 8864.702229 C = 9036.495705 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.908 5.908 2 C 0.025 3.975 3 Si 0.969 3.031 4 H -0.270 1.270 5 H -0.275 1.275 6 H -0.278 1.278 7 C -0.511 4.511 8 H 0.058 0.942 9 C 0.015 3.985 10 C 0.171 3.829 11 N -0.576 5.576 12 C 0.697 3.303 13 O -0.576 6.576 14 N -0.697 5.697 15 C 0.137 3.863 16 C -0.110 4.110 17 C -0.071 4.071 18 C -0.085 4.085 19 C -0.119 4.119 20 C -0.124 4.124 21 C -0.126 4.126 22 C -0.128 4.128 23 C -0.083 4.083 24 C -0.070 4.070 25 C 0.522 3.478 26 O -0.489 6.489 27 C -0.193 4.193 28 C -0.187 4.187 29 H 0.268 0.732 30 H 0.119 0.881 31 H 0.055 0.945 32 H 0.447 0.553 33 H 0.097 0.903 34 H 0.079 0.921 35 H 0.110 0.890 36 H 0.089 0.911 37 H 0.144 0.856 38 H 0.143 0.857 39 H 0.138 0.862 40 H 0.124 0.876 41 H 0.079 0.921 42 H 0.100 0.900 43 H 0.074 0.926 44 H 0.067 0.933 45 H 0.073 0.927 46 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.351 -21.784 0.621 24.126 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.546 5.546 2 C -0.176 4.176 3 Si 0.793 3.207 4 H -0.194 1.194 5 H -0.200 1.200 6 H -0.204 1.204 7 C -0.549 4.549 8 H 0.076 0.924 9 C 0.013 3.987 10 C 0.051 3.949 11 N -0.320 5.320 12 C 0.398 3.602 13 O -0.452 6.452 14 N -0.362 5.362 15 C 0.046 3.954 16 C -0.148 4.148 17 C -0.108 4.108 18 C -0.085 4.085 19 C -0.137 4.137 20 C -0.142 4.142 21 C -0.144 4.144 22 C -0.146 4.146 23 C -0.083 4.083 24 C -0.108 4.108 25 C 0.310 3.690 26 O -0.360 6.360 27 C -0.231 4.231 28 C -0.225 4.225 29 H 0.078 0.922 30 H 0.136 0.864 31 H 0.074 0.926 32 H 0.294 0.706 33 H 0.115 0.885 34 H 0.098 0.902 35 H 0.128 0.872 36 H 0.107 0.893 37 H 0.162 0.838 38 H 0.161 0.839 39 H 0.156 0.844 40 H 0.142 0.858 41 H 0.097 0.903 42 H 0.118 0.882 43 H 0.093 0.907 44 H 0.085 0.915 45 H 0.091 0.909 46 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -10.326 -21.100 0.683 23.501 hybrid contribution 0.889 0.901 -0.033 1.266 sum -9.437 -20.199 0.649 22.304 Atomic orbital electron populations 1.69774 1.07018 1.27907 1.49894 1.25782 0.95849 1.02521 0.93403 0.85337 0.78729 0.78706 0.77880 1.19421 1.20024 1.20359 1.20811 0.92925 0.89770 1.51360 0.92376 1.19429 0.93621 0.91134 0.94487 1.21449 0.97007 0.76644 0.99805 1.46983 1.40776 1.13839 1.30446 1.16161 0.80674 0.81698 0.81626 1.90961 1.37603 1.83515 1.33137 1.45389 1.45207 1.11552 1.34101 1.20912 0.95142 0.90664 0.88654 1.21703 0.90086 0.99404 1.03625 1.20456 1.02921 0.89795 0.97629 1.19729 0.96732 0.95397 0.96690 1.21410 1.00529 0.91682 1.00070 1.21415 0.96770 1.00471 0.95512 1.21333 0.98020 0.95981 0.99084 1.21286 1.00466 0.93342 0.99543 1.19324 0.98021 0.93431 0.97491 1.20476 1.02371 0.91965 0.95983 1.21158 0.77419 0.90199 0.80227 1.90764 1.51300 1.62936 1.31045 1.22902 1.01007 1.06189 0.92984 1.22820 0.97822 0.98572 1.03243 0.92184 0.86388 0.92645 0.70616 0.88462 0.90244 0.87191 0.89316 0.83804 0.83893 0.84397 0.85758 0.90258 0.88192 0.90691 0.91487 0.90878 0.90400 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -50.92 10.50 21.45 0.23 -50.69 16 2 C 0.02 1.35 5.39 84.65 0.46 1.80 16 3 Si 0.97 43.38 29.54 68.60 2.03 45.41 16 4 H -0.27 -11.88 7.11 99.48 0.71 -11.17 16 5 H -0.27 -11.92 7.11 99.48 0.71 -11.21 16 6 H -0.28 -12.20 7.11 99.48 0.71 -11.49 16 7 C -0.51 -28.78 9.03 25.60 0.23 -28.54 16 8 H 0.06 3.27 7.82 -2.91 -0.02 3.24 16 9 C 0.01 0.76 2.40 -52.93 -0.13 0.63 16 10 C 0.17 8.66 4.93 86.38 0.43 9.08 16 11 N -0.58 -23.92 1.87 -773.19 -1.45 -25.36 16 12 C 0.70 26.43 6.65 179.35 1.19 27.62 16 13 O -0.58 -25.91 17.04 -3.84 -0.07 -25.97 16 14 N -0.70 -18.50 5.34 -443.21 -2.37 -20.87 16 15 C 0.14 3.52 0.84 2.53 0.00 3.52 16 16 C -0.11 -2.12 5.10 30.41 0.16 -1.96 16 17 C -0.07 -0.95 5.24 29.75 0.16 -0.79 16 18 C -0.09 -1.32 5.74 -19.86 -0.11 -1.44 16 19 C -0.12 -1.50 9.60 22.36 0.21 -1.28 16 20 C -0.12 -1.53 10.05 22.20 0.22 -1.31 16 21 C -0.13 -1.79 10.05 22.20 0.22 -1.57 16 22 C -0.13 -2.23 9.61 22.36 0.21 -2.02 16 23 C -0.08 -1.54 5.71 -19.84 -0.11 -1.66 16 24 C -0.07 -1.60 4.73 29.54 0.14 -1.46 16 25 C 0.52 19.27 5.44 87.76 0.48 19.75 16 26 O -0.49 -20.89 17.27 -2.86 -0.05 -20.94 16 27 C -0.19 -9.26 9.64 30.59 0.29 -8.96 16 28 C -0.19 -8.80 9.53 30.59 0.29 -8.51 16 29 H 0.27 14.19 8.32 -92.71 -0.77 13.42 16 30 H 0.12 6.55 5.76 -2.39 -0.01 6.54 16 31 H 0.06 2.99 7.94 -2.39 -0.02 2.97 16 32 H 0.45 9.39 8.25 -92.71 -0.77 8.63 16 33 H 0.10 1.80 8.13 -2.39 -0.02 1.79 16 34 H 0.08 1.59 8.12 -2.38 -0.02 1.57 16 35 H 0.11 0.99 8.12 -2.39 -0.02 0.97 16 36 H 0.09 1.07 7.42 -2.39 -0.02 1.05 16 37 H 0.14 1.12 8.05 -2.91 -0.02 1.10 16 38 H 0.14 1.08 8.06 -2.91 -0.02 1.06 16 39 H 0.14 1.41 8.06 -2.91 -0.02 1.39 16 40 H 0.12 2.01 8.05 -2.91 -0.02 1.98 16 41 H 0.08 1.96 8.13 -2.39 -0.02 1.94 16 42 H 0.10 2.31 8.13 -2.39 -0.02 2.30 16 43 H 0.07 3.60 8.14 -2.38 -0.02 3.59 16 44 H 0.07 3.10 6.01 -2.38 -0.01 3.08 16 45 H 0.07 3.30 5.29 -2.39 -0.01 3.29 16 46 H 0.08 3.59 8.14 -2.39 -0.02 3.57 16 Total: -1.00 -68.84 368.49 2.92 -65.92 By element: Atomic # 1 Polarization: 29.34 SS G_CDS: 0.25 Total: 29.60 kcal Atomic # 6 Polarization: -1.43 SS G_CDS: 4.34 Total: 2.92 kcal Atomic # 7 Polarization: -93.34 SS G_CDS: -3.59 Total: -96.92 kcal Atomic # 8 Polarization: -46.80 SS G_CDS: -0.11 Total: -46.91 kcal Atomic # 14 Polarization: 43.38 SS G_CDS: 2.03 Total: 45.41 kcal Total: -68.84 2.92 -65.92 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000596238953.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 59.320 kcal (2) G-P(sol) polarization free energy of solvation -68.839 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.520 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.923 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.917 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.597 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds